rna1076, rna1076 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1076
Unique Name	rna1076
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2220
Alignment location	CM002456.1:1135795..1136464 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100006g90.8619.mrna
Orig protein id	gnl\|cribi\|Naga_100006g90.8619
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1135795..1136464 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g90	gene1037	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29530.1	cds1075	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1076	rna1076-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1135795..1136464-
coding sequence from alignment at CM002456.1:1135795..1136464-

mRNA sequence

>rna1076 ID=rna1076|Name=rna1076|organism=Nannochloropsis gaditana|type=mRNA|length=2220bp
AGCGTTTAAAAAAGCGTATAATCCGCGCATAAACTGATGGAAAGGTGCCA
TAATTCCTGCCATCCAGACTAGCGCTACCCATGAGCGAGAATTTCCCCCG
TACTAATATTCCGGATGGACTAGATGCTGGATCGATAATTGCGCACGTCC
CACCTTCCGACGAGTTGCCGCAGAAAATGCGGACGAAGCCTCCCCTTGAG
TTCACGTTCGAGGTAGGGGGTTATAATTCGTGCAGTTTTTTCCAAAAAGC
TACCAAGCTGGTATCGGCACTGACATTGTTATATCCAGATGGCTACATAC
GATGCCAGGAGCAAAACTTTCCAACTCGAGACGCCTACAGGGCTTGGTTG
TCTGAGCGCAAGATGGCGCCTCAATTTAATGCGGACCCGCGAGCGCAAGC
GCATACTTCTAGCCCGTTTGTCGTACTGAATGGCACATTTTTAGGGGGTT
GCGATGATACGATTGCCTTCTGTCGGCATTATTTCGTTGTTGACAAAAGC
GTCGGCGGGGTCAGCCGGGCAGAGGATACCGAGACGGAGGTTTTGCAGGC
TCCCGACGGCTTCGACAAGCAACATACATACGATTATGACTTGATTGTGA
TCGGTGGAGGTAGCGGAGGTTGTGCTTGTGCCGAGGAGGCATCCCTTTTA
GGCGCTCGAGTTTTACTTTTGGATTATAAAAACCCCTCTCCCCGAGGTGC
TGCACGGGGACTAGGGGGTACAAGCGTAAATGCGAGTTGCATTCCGCGCC
ATCTATTCCACATAGGAAGCGCTCTGGGCGAAACGATTGCAGTAGATTTG
CCAGCGTTTGGTTGGGAGTTTGGGGTGGAATCGGGAGCAACGAGGCAGGA
CGAGAGAGCAACGCAGGCAGAGGACGAGAGACAGCAGATGCACCACCACT
CTTGGTCCATTCTGCGGGATAATGTACAAGCATACACCCGCCGCCTCAAG
TTTGAACTCCGTCTCAAGCTTCGTGATGCGCGTGTGACGTACTTTAACAA
GCTTGGTCGATTTTGGGACGCGCATACCTTGGACGTTCAAGGTGATCACG
GGGGCACAGGGCGACTGACTGGAGCCCGCTTCGTGATTGCAGTGGGCGAT
CGGCCCCAGCCTCTAGACTGCCCCGGGGGGGAACTAGCAATCACAACAGA
CGAGCTGTTCTCCTTAGAGAGGGCACCCGGTGAGACGTGTGTGGTGGGTG
TCGGCCACATCGCTGTGGAGTGCGCGGATCTTCTTCGAGGCATGGGCCAT
ACCGTGACGCTGGCGGTACGCTCCACCATTCTCCAGGACGAGGAGTACGA
CAGAGAGTGCGTTGAGAAGTTGGAAGAGCACCTGACAAAGGCCCGGCGCT
TGCGCCTTTTACAAGGTGTTGTGCCCTTGTCGTTGGCTCTGGAGGAGGCG
GGCGGTCGGAAAAAGGTGCGCGTCACTTTTTCGAGCGGGAACGCATGCGT
GTTTGACACCGTCATCGCAGCCCTAGGCCGAATTGTCGACCTGGAGGCCT
TGAATACAGACGGAATAGGTTTGGCAGTGGACCCAGAGAATGGAAGATTG
CGATGCCAAGGCGAGCAAACGACCCAGGCCCATATATACGCGATTGGCAG
TGTGCGCACCGGGAGCCCGGAGCAGGCGACCTGTGCAGCTCAAGCAGGAA
AATTGCTCGCCCGAAAAATGTTCGGAAGCTCTCAAGTAGGGGTAAACGAT
GCTGTCATACCGCGAAGGATCCTGACATTGTGGGAGTACGCCTGTGTCGG
TCTGAGCGAGGCACAGGCGAGGGCGGTAGTGGAGGGGAAGGACTTGAAAG
TGTACCGAGCCTCTTTCACACCCTTGGAGTGGGCCATCGTCCCGGAAAGA
ACGGGGCCAGAAGGGACCAGGGACGGGTTTCTCAAGGTGGTGGTGCGGAG
ATCGGATGACTGCGTGCTCGGCTTGCACTATCTGGGCCCACACGCGGGAG
AGGTGATAGAGGGATTTGCAGTGGCCATGAATGGGCAATTGTGTGCGGAA
AATGGGGCTGGAAAGAGCCTCACCTACGCACAGCTTGTGAGCACGACGGG
TATACATCCATATTCTGCGCTTTCGGTCATTCAAAGCTCGCGGCTAACAA
CCCTTAGCCCCGGTCAAGCTTAGTCCGCAGTGGATCAGAACAACAAGGTG
AGGTTTGTACGATAAAATCATCTTAGAGTCTATTTTTCTCGTCAATGTCA
TACACGTTTTAGTCGTAATT

protein sequence of rna1076

>rna1076-protein ID=rna1076-protein|Name=rna1076|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MVALDLDLALIIHGGFEGIVGLILLLQPHYVFPYIARRASYNNSERSLLR
WFAFSIIVQAIVAYAAIMKLDAKTKRIILSAFLFYHSVIVVDASYGYYLE
GTLDEAATGLHAIMMVVVGFLLAAGGRRARSSPRKTR

mRNA from alignment at CM002456.1:1135795..1136464-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1076 ID=rna1076|Name=rna1076|organism=Nannochloropsis gaditana|type=mRNA|length=670bp|location=Sequence derived from alignment at CM002456.1:1135795..1136464- (Nannochloropsis gaditana)
CGTTTTGTTTCCCTCGTGTCAAGGTTATGTCAAACTCACTGCTTTCTCCT
TCCTCCTAATCTTACAAAGGGTTGACGGATGGTGGCATTGGACCTGGACC
TTGCTCTTATAATTCATGGCGGCTTTGAGGGTATCGTCGGCTTGATCCTC
TTGTTGCAGCCGCACTATGTCTTTCCGTACATTGCTAGGCGTGCATCTTA
CAACAATAGTGAACGATCCCTTCTTCGGTGGTTCGCCTTCAGCATTATCG
TCCAGGCTATTGTCGCATATGCCGCCATCATGAAACTCGACGCTAAAACG
AAACGCATCATTTTGTCGGCCTTCCTCTTCTACCACTCTGTCATCGTAGT
GGATGCATCCTATGGGTACTACTTGGAAGGCACGCTTGATGAGGCTGCCA
CGGGGTTACACGCGATTATGATGGTTGTGGTCGGGTTTTTATTAGCCGCC
GGTGGACGACGTGCCCGAAGTTCGCCGCGGAAAACACGGTAAGAGACGGT
GTGAATTTTCAAGAGTGCGTGAAAATGACAAGTTGGGTCTGATGGTGTGG
GCATTAATTTACGAAGTACAAAAGAGCATGCAAAGAAAGAATCAGCAACT
TTGCCAGTAAGCACGAATTACGACTAAAACGTGTATGACATTGACGAGAA
AAATAGACTCTAAGATGATT

Coding sequence (CDS) from alignment at CM002456.1:1135795..1136464-

>rna1076 ID=rna1076|Name=rna1076|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at CM002456.1:1135795..1136464- (Nannochloropsis gaditana)
ATGGTGGCATTGGACCTGGACCTTGCTCTTATAATTCATGGCGGCTTTGA
GGGTATCGTCGGCTTGATCCTCTTGTTGCAGCCGCACTATGTCTTTCCGT
ACATTGCTAGGCGTGCATCTTACAACAATAGTGAACGATCCCTTCTTCGG
TGGTTCGCCTTCAGCATTATCGTCCAGGCTATTGTCGCATATGCCGCCAT
CATGAAACTCGACGCTAAAACGAAACGCATCATTTTGTCGGCCTTCCTCT
TCTACCACTCTGTCATCGTAGTGGATGCATCCTATGGGTACTACTTGGAA
GGCACGCTTGATGAGGCTGCCACGGGGTTACACGCGATTATGATGGTTGT
GGTCGGGTTTTTATTAGCCGCCGGTGGACGACGTGCCCGAAGTTCGCCGC
GGAAAACACGGTAA

Synonyms

Publications