rna1075, rna1075 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1075
Unique Name	rna1075
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1782
Alignment location	CM002456.1:1133630..1135849 +

Link to JBrowse

Properties


Property Name	Value
Product	thioredoxin reductase 3
Orig transcript id	gnl\|cribi\|Naga_100006g91.8615.mrna
Orig protein id	gnl\|cribi\|Naga_100006g91.8615
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1133630..1135849 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g91	gene1036	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1075	rna1075-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29526.1	cds1074	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1133630..1135849+
coding sequence from alignment at CM002456.1:1133630..1135849+

mRNA sequence

>rna1075 ID=rna1075|Name=rna1075|organism=Nannochloropsis gaditana|type=mRNA|length=1782bp
AGGAATTATGGCACCTTTCCATCAGTTTATGCGCGGATTATACGCTTTTT
TAAACGCTCCGTCTTCAACGGCGATCTTACGGTACGTGTCCCCAGCCTTT
CACCCGTGCCTGCCCTTTTCCCGATCGTGTTATGCACCTCCATGAGACTA
ATGACATCTTAATCAACAGAGAACGTCATGCTGTATGCCTCGGCCGGCTG
GGATGGGCGTTCCTGTCAAGTAGCCTTTGTGGTCAGTGTGCTTATCTTAG
TTCGCGCAAGACTGCCTCAAGCCTACTCCTCATCTCGCCCTGCCAGCTTC
ATCTCTGCCGCATTCAAAAATCGTGGAGGCCTCTTCACGACCAACATAAG
GGTACAAAGGAGCCTACTCTTTCCTCGGACGTCTGTGGCTGTCTGTGACA
CTCGACGTAAAAGAAAGCTCCACTACGATGTACCCAAACCCGATTCGAAT
GACGGAAACTTCGATAATTGGGAGTTCGGGGTCAACGCGGGATGGAGTGG
AGAGAACAACGGTCGCAGTCTTAGAATAAAGCAACATGGTGACGGTTCTA
CTCAAAGTGTCGGTAAAGAAGCTGAAGAAAGGGAGGGTGAAAATCACAAT
ATGGATCACGAGGAGGAGGATGACCGACATATCCGAGACGTGGCTGCTGC
GACAGAGTGCCTATCCAGATTCTGTACTGCTGCTCGTTTAGAGCGTTTGC
GAGATATTGTGAACAAGCGCACCAAATCTGTCCAATTTGTCTTCGAAAAT
GTCGCCAACCCCAACAATCTATGGGCGTGTCTTCGATCTCTGGATGCTTT
CGGAGTTCAGTATGCACACGTCATCCTCGATACTGCTCACTACCGCAAAC
CGCACCGCCTCGCTCAAGCAAAGAGCGCTATGGGCTCACAAAAATGGTTG
ACCGTCAGGGAGCACCCGAGCGCGTCAGCTTGCGTGGCCGCATTGAAGAG
AGAGGGATATTACGTCTTGGCGAGCGACTTGAAGCCGGGCACGTCCCCGA
AACCAGTGCAGGAGGTGAATTGGGCGGCTCAGAAGGTGGCGATTGTGATG
GGGAACGAAGAAAGGGGCATCACGGAGGAAATGCGCTCCTTATGTGACGG
GACGTTCCAGATTCCGATGATGGGCTTCGCGGAAAGCTTCAATTTATCCG
GGAGTACTGCAGTGACGTTGGCTTTCGTGAGCTCCATGGGAGGTCTGAAG
CACGGAGACCTGCCGACAGCCGAGAAGAACCTGTTGTTGCTACGGTGGCT
GCTGAGATCGGTGCCGCAAGGGCCGGCGATCTTGAGGCGGGAGGGTTTGC
TGATTGAGGACGAGCGTTTCTTGCCGACATCTAAGGCAGTGCTTGGTTAC
AGCCTAGGGGGGTAAGCGTCGCAGGCAATGCCAGGCCGAAACTGAAACAG
TTTGAACCCGAGACATACGGGAAATGTGAATAATTGCCTAGGACGGGAAA
GCCAAAAGAAAGACATACGAAACGTAGAAAATCGAACGAGAAATCTGGAA
GCTCCGAACTTCACATTTGTGACCTTTTCCGCCATGAGACGACTAGGCAG
TCGTCAGCGGGGTCAATTTCTGCCCGTCAATACAGGACAAATGAGTCAAA
AGAGTGTTAATGTCTTCGTACGTATCCATCAAATATCGACAATCGTGGGC
CGCCATCATCCAAGAACATAACTCGACGCCGCGATAGACACGTGTGTTGC
ACCCTCTCGGGGAGAAGCTTTTACATTCAAAGAGTCACCAACTTGCGCGG
ATCAGGGAGGGAAGCGGACTCTTGGTCAGGGT

protein sequence of rna1075

>rna1075-protein ID=rna1075-protein|Name=rna1075|organism=Nannochloropsis gaditana|type=polypeptide|length=680bp
MSENFPRTNIPDGLDAGSIIAHVPPSDELPQKMRTKPPLEFTFEVGGYNS
CSFFQKATKLVSALTLLYPDGYIRCQEQNFPTRDAYRAWLSERKMAPQFN
ADPRAQAHTSSPFVVLNGTFLGGCDDTIAFCRHYFVVDKSVGGVSRAEDT
ETEVLQAPDGFDKQHTYDYDLIVIGGGSGGCACAEEASLLGARVLLLDYK
NPSPRGAARGLGGTSVNASCIPRHLFHIGSALGETIAVDLPAFGWEFGVE
SGATRQDERATQAEDERQQMHHHSWSILRDNVQAYTRRLKFELRLKLRDA
RVTYFNKLGRFWDAHTLDVQGDHGGTGRLTGARFVIAVGDRPQPLDCPGG
ELAITTDELFSLERAPGETCVVGVGHIAVECADLLRGMGHTVTLAVRSTI
LQDEEYDRECVEKLEEHLTKARRLRLLQGVVPLSLALEEAGGRKKVRVTF
SSGNACVFDTVIAALGRIVDLEALNTDGIGLAVDPENGRLRCQGEQTTQA
HIYAIGSVRTGSPEQATCAAQAGKLLARKMFGSSQVGVNDAVIPRRILTL
WEYACVGLSEAQARAVVEGKDLKVYRASFTPLEWAIVPERTGPEGTRDGF
LKVVVRRSDDCVLGLHYLGPHAGEVIEGFAVAMNGQLCAENGAGKSLTYA
QLVSTTGIHPYSALSVIQSSRLTTLSPGQA

mRNA from alignment at CM002456.1:1133630..1135849+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1075 ID=rna1075|Name=rna1075|organism=Nannochloropsis gaditana|type=mRNA|length=2220bp|location=Sequence derived from alignment at CM002456.1:1133630..1135849+ (Nannochloropsis gaditana)
AGCGTTTAAAAAAGCGTATAATCCGCGCATAAACTGATGGAAAGGTGCCA
TAATTCCTGCCATCCAGACTAGCGCTACCCATGAGCGAGAATTTCCCCCG
TACTAATATTCCGGATGGACTAGATGCTGGATCGATAATTGCGCACGTCC
CACCTTCCGACGAGTTGCCGCAGAAAATGCGGACGAAGCCTCCCCTTGAG
TTCACGTTCGAGGTAGGGGGTTATAATTCGTGCAGTTTTTTCCAAAAAGC
TACCAAGCTGGTATCGGCACTGACATTGTTATATCCAGATGGCTACATAC
GATGCCAGGAGCAAAACTTTCCAACTCGAGACGCCTACAGGGCTTGGTTG
TCTGAGCGCAAGATGGCGCCTCAATTTAATGCGGACCCGCGAGCGCAAGC
GCATACTTCTAGCCCGTTTGTCGTACTGAATGGCACATTTTTAGGGGGTT
GCGATGATACGATTGCCTTCTGTCGGCATTATTTCGTTGTTGACAAAAGC
GTCGGCGGGGTCAGCCGGGCAGAGGATACCGAGACGGAGGTTTTGCAGGC
TCCCGACGGCTTCGACAAGCAACATACATACGATTATGACTTGATTGTGA
TCGGTGGAGGTAGCGGAGGTTGTGCTTGTGCCGAGGAGGCATCCCTTTTA
GGCGCTCGAGTTTTACTTTTGGATTATAAAAACCCCTCTCCCCGAGGTGC
TGCACGGGGACTAGGGGGTACAAGCGTAAATGCGAGTTGCATTCCGCGCC
ATCTATTCCACATAGGAAGCGCTCTGGGCGAAACGATTGCAGTAGATTTG
CCAGCGTTTGGTTGGGAGTTTGGGGTGGAATCGGGAGCAACGAGGCAGGA
CGAGAGAGCAACGCAGGCAGAGGACGAGAGACAGCAGATGCACCACCACT
CTTGGTCCATTCTGCGGGATAATGTACAAGCATACACCCGCCGCCTCAAG
TTTGAACTCCGTCTCAAGCTTCGTGATGCGCGTGTGACGTACTTTAACAA
GCTTGGTCGATTTTGGGACGCGCATACCTTGGACGTTCAAGGTGATCACG
GGGGCACAGGGCGACTGACTGGAGCCCGCTTCGTGATTGCAGTGGGCGAT
CGGCCCCAGCCTCTAGACTGCCCCGGGGGGGAACTAGCAATCACAACAGA
CGAGCTGTTCTCCTTAGAGAGGGCACCCGGTGAGACGTGTGTGGTGGGTG
TCGGCCACATCGCTGTGGAGTGCGCGGATCTTCTTCGAGGCATGGGCCAT
ACCGTGACGCTGGCGGTACGCTCCACCATTCTCCAGGACGAGGAGTACGA
CAGAGAGTGCGTTGAGAAGTTGGAAGAGCACCTGACAAAGGCCCGGCGCT
TGCGCCTTTTACAAGGTGTTGTGCCCTTGTCGTtggctctggaggaggcg
ggcggtcGGAAAAAGGTGCGCGTCACTTTTTCGAGCGGGAACGCATGCGT
GTTTGACACCGTCATCGCAGCCCTAGGCCGAATTGTCGACCTGGAGGCCT
TGAATACAGACGGAATAGGTTTGGCAGTGGACCCAGAGAATGGAAGATTG
CGATGCCAAGGCGAGCAAACGACCCAGGCCCATATATACGCGATTGGCAG
TGTGCGCACCGGGAGCCCGGAGCAGGCGACCTGTGCAGCTCAAGCAGGAA
AATTGCTCGCCCGAAAAATGTTCGGAAGCTCTCAAGTAGGGGTAAACGAT
GCTGTCATACCGCGAAGGATCCTGACATTGTGGGAGTACGCCTGTGTCGG
TCTGAGCGAGGCACAGGCGAGGGCGGtagtggaggggaaggacttgAAAG
TGTACCGAGCCTCTTTCACACCCTTGGAGTGGGCCATCGTCCCGGAAAGA
ACGGGGCCAGAAGGGACCAGGGACGGGTTTCtcaaggtggtggtgcggaG
ATCGGATGACTGCGTGCTCGGCTTGCACTATCTGGGCCCACACGCGGGAG
AGGTGATAGAGGGATTTGCAGTGGCCATGAATGGGCAATTGTGTGCGGAA
AATGGGGCTGGAAAGAGCCTCACCTACGCACAGCTTGTGAGCACGACGGG
TATACATCCATATTCTGCGCTTTCGGTCATTCAAAGCTCGCGGCTAACAA
CCCTTAGCCCCGGTCAAGCTTAGTCCGCAGTGGATCAGAACAACAAGGTG
AGGTTTGTACGATAAAATCATCTTAGAGTCTATTTTTCTCGTCAATGTCA
TACACGTTTTAGTCGTAATT

Coding sequence (CDS) from alignment at CM002456.1:1133630..1135849+

>rna1075 ID=rna1075|Name=rna1075|organism=Nannochloropsis gaditana|type=CDS|length=2043bp|location=Sequence derived from alignment at CM002456.1:1133630..1135849+ (Nannochloropsis gaditana)
ATGAGCGAGAATTTCCCCCGTACTAATATTCCGGATGGACTAGATGCTGG
ATCGATAATTGCGCACGTCCCACCTTCCGACGAGTTGCCGCAGAAAATGC
GGACGAAGCCTCCCCTTGAGTTCACGTTCGAGGTAGGGGGTTATAATTCG
TGCAGTTTTTTCCAAAAAGCTACCAAGCTGGTATCGGCACTGACATTGTT
ATATCCAGATGGCTACATACGATGCCAGGAGCAAAACTTTCCAACTCGAG
ACGCCTACAGGGCTTGGTTGTCTGAGCGCAAGATGGCGCCTCAATTTAAT
GCGGACCCGCGAGCGCAAGCGCATACTTCTAGCCCGTTTGTCGTACTGAA
TGGCACATTTTTAGGGGGTTGCGATGATACGATTGCCTTCTGTCGGCATT
ATTTCGTTGTTGACAAAAGCGTCGGCGGGGTCAGCCGGGCAGAGGATACC
GAGACGGAGGTTTTGCAGGCTCCCGACGGCTTCGACAAGCAACATACATA
CGATTATGACTTGATTGTGATCGGTGGAGGTAGCGGAGGTTGTGCTTGTG
CCGAGGAGGCATCCCTTTTAGGCGCTCGAGTTTTACTTTTGGATTATAAA
AACCCCTCTCCCCGAGGTGCTGCACGGGGACTAGGGGGTACAAGCGTAAA
TGCGAGTTGCATTCCGCGCCATCTATTCCACATAGGAAGCGCTCTGGGCG
AAACGATTGCAGTAGATTTGCCAGCGTTTGGTTGGGAGTTTGGGGTGGAA
TCGGGAGCAACGAGGCAGGACGAGAGAGCAACGCAGGCAGAGGACGAGAG
ACAGCAGATGCACCACCACTCTTGGTCCATTCTGCGGGATAATGTACAAG
CATACACCCGCCGCCTCAAGTTTGAACTCCGTCTCAAGCTTCGTGATGCG
CGTGTGACGTACTTTAACAAGCTTGGTCGATTTTGGGACGCGCATACCTT
GGACGTTCAAGGTGATCACGGGGGCACAGGGCGACTGACTGGAGCCCGCT
TCGTGATTGCAGTGGGCGATCGGCCCCAGCCTCTAGACTGCCCCGGGGGG
GAACTAGCAATCACAACAGACGAGCTGTTCTCCTTAGAGAGGGCACCCGG
TGAGACGTGTGTGGTGGGTGTCGGCCACATCGCTGTGGAGTGCGCGGATC
TTCTTCGAGGCATGGGCCATACCGTGACGCTGGCGGTACGCTCCACCATT
CTCCAGGACGAGGAGTACGACAGAGAGTGCGTTGAGAAGTTGGAAGAGCA
CCTGACAAAGGCCCGGCGCTTGCGCCTTTTACAAGGTGTTGTGCCCTTGT
CGTtggctctggaggaggcgggcggtcGGAAAAAGGTGCGCGTCACTTTT
TCGAGCGGGAACGCATGCGTGTTTGACACCGTCATCGCAGCCCTAGGCCG
AATTGTCGACCTGGAGGCCTTGAATACAGACGGAATAGGTTTGGCAGTGG
ACCCAGAGAATGGAAGATTGCGATGCCAAGGCGAGCAAACGACCCAGGCC
CATATATACGCGATTGGCAGTGTGCGCACCGGGAGCCCGGAGCAGGCGAC
CTGTGCAGCTCAAGCAGGAAAATTGCTCGCCCGAAAAATGTTCGGAAGCT
CTCAAGTAGGGGTAAACGATGCTGTCATACCGCGAAGGATCCTGACATTG
TGGGAGTACGCCTGTGTCGGTCTGAGCGAGGCACAGGCGAGGGCGGtagt
ggaggggaaggacttgAAAGTGTACCGAGCCTCTTTCACACCCTTGGAGT
GGGCCATCGTCCCGGAAAGAACGGGGCCAGAAGGGACCAGGGACGGGTTT
CtcaaggtggtggtgcggaGATCGGATGACTGCGTGCTCGGCTTGCACTA
TCTGGGCCCACACGCGGGAGAGGTGATAGAGGGATTTGCAGTGGCCATGA
ATGGGCAATTGTGTGCGGAAAATGGGGCTGGAAAGAGCCTCACCTACGCA
CAGCTTGTGAGCACGACGGGTATACATCCATATTCTGCGCTTTCGGTCAT
TCAAAGCTCGCGGCTAACAACCCTTAGCCCCGGTCAAGCTTAG

Synonyms

Publications