rna1073, rna1073 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1073
Unique Name	rna1073
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	978
Alignment location	CM002456.1:1129901..1131961 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100006g93.8609.mrna
Orig protein id	gnl\|cribi\|Naga_100006g93.8609
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1129901..1131961 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100006g93	gene1034	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1073	rna1073-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29520.1	cds1072	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1129901..1131961+
coding sequence from alignment at CM002456.1:1129901..1131961+

mRNA sequence

>rna1073 ID=rna1073|Name=rna1073|organism=Nannochloropsis gaditana|type=mRNA|length=978bp
ATGGCGGCGGGGGCTAGTGATGACAGACAGGAACTTCTTAATTTGATCAA
AGACGGCTGGTTTGAGGAGAGACAGAGCTTTTGGACAGGACAACGGTTCT
CCCTCCAAGTGGAAAAGGTGCTCTTTCACGCGCGTTCTGCCTATCAGGAC
GTTCTGCTCTTTCAATCAACCTCCTACGGCAAAGTCCTCGTGCTCGATGG
AGTCATCCAAGCCACGGAACGTGACGAGATGGCTTATCAAGAAATGATTT
CGCACTTGCCCCTTTTTGCGCACCCAAACCCGCGCAAAGTCCTCATCATT
GGGGGCGGGGATGGAGGCGTGCTGCGGGAGGTGGCGAAACATCCGTCGAT
CGACACCATCCACATGTGCGAGATAGATAAAATGGTGATCGACGTGAGCA
AAGAATTTATGAGTGACACGTTGGCCACGTCGTATGAAGATCCTCGCTTG
ACGCTGGTGGTTGACGATGCGGCCAAATTTGTTACTCAGGACGGGCACTG
CACCTACGATTGCATTATTGTCGACTCGTCCGACCCCGTTGGACCCGCCG
AAGCCCTCTTCGAAGCCGCCTTTTTTCAATCGCTCCATAAAGCACTCAAC
CCGGGCGGTATCATATGCACACAGGCAGAATGTCAATGGCTACATTTGGA
TTTCATTTCCAAGGTCTACCGAGCTTGCTGTGACATCTTTACCGAGGTCG
AGTACGCATACACAGCCATCCCCACCTATCCTTCAGGACAAATTGGTTTC
ATGCTCCTCTACAAGGGCCCTGAGACCTCTGCAGCTGAAGATGATGGTAA
GTGCGACGATTTACGGCCTTTGACTTCTTTACGGGTCGCCGCCCGTACGC
CATCTGCTGAGGTTCAAGCAAGCCTAAAATTTTATAATCCTGCTCTTCAC
ACCGCTGCATTTGCCTTGCCCGAATTCGCTCGACGGAAGCTGGACGAGGC
CCGTGCACAAGTCAAACCGCGCTCATAG

protein sequence of rna1073

>rna1073-protein ID=rna1073-protein|Name=rna1073|organism=Nannochloropsis gaditana|type=polypeptide|length=686bp
MVTTSLCAESSDFLQQQQFPGPTSIDTQQPLEKHVLSVTEVHETTGSPST
ETTDNQHGRQKLQQGIRTEQMPHQPYLLQPLPVLSPPPSAEDKNQFAPSA
MPPQLALFSQPTSSLTLALETADPPVLEGFYNYPKSQEGVHHEPWIRLFG
AILQPAADGFVVTDHTCTRGVSLWTFTLRLLGVKALGWRALDESATWKSI
GIRVTKLRKQQEEGSAKININEWIGEHIVWRREFRTRPFDMRVPRPPPPR
TTEEAAAELPGPVRVKSTFALGITLRDPSDPDVQRALANAVDRIAPGAVP
SRMGLVFAEYRRLWNAYEPLSLQQRQHGRVGQTAGKKRKKMDSEAASAAL
EPPAVAPSASDDSAMGEGQEKGQVQLVLEGQGEGHDQVFNSAEREAKDYG
MMVMQAVGGDESHVHMLNGGMGMAAMEGGEGGRGGGMTGPGSSGGAVMLA
PADTASLPYMAHQENEIQPPIAREGRVEYPRVHGGAAGVGGGGMGLATGL
PGQRGHVQGEDVHGERLPVEVGSLHLVAPQNPPFSHGGDHVRREDLSPSA
SREAGPQPEFFLQHGPTDRQDVHLVGGGEESGEYGVYHVEGPDAEDGGGM
ASLASMAMEAGVPVDLEHHHPQEHSHHAGVVHEASFREEGLVEDQPQGAH
DHEMPLHQDANGDGGGGAYPDQESASLPDPRKLVTL

mRNA from alignment at CM002456.1:1129901..1131961+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1073 ID=rna1073|Name=rna1073|organism=Nannochloropsis gaditana|type=mRNA|length=2061bp|location=Sequence derived from alignment at CM002456.1:1129901..1131961+ (Nannochloropsis gaditana)
ATGGTGACAACATCACTGTGCGCTGAATCTTCCGACTttctgcagcagca
gcaatttCCTGGTCCTACGTCAATAGACACGCAGCAACCGCTTGAGAAGC
ATGTACTATCCGTGACGGAGGTGCACGAGACGACCGGGAGTCCCTCGACA
GAGACCACGGACAACCAACACGGACGGCAAAAATTGCAGCAGGGCATAAG
AACCGAACAAATGCCGCATCAGCCGTACCTTTTACAGCCCTTgcccgtcc
tttcccctccaccttctgcGGAAGACAAGAACCAGTTTGCGCCCTCCGCT
ATGCCGCCACAGCTTGCGCTATTTTCACAACCCACAAGTTCATTAACGTT
GGCATTGGAGACTGCGGATCCTCCCGTCTTGGAAGGATTTTACAACTATC
CCAAATCCCAGGAAGGCGTCCATCACGAGCCGTGGATTCGGCTGTTCGGT
GCTATCTTGCAGCCTGCCGCTGACGGCTTTGTCGTCACAGATCACACATG
TACGAGGGGCGTCAGCCTCTGGACCTTTACGTTGCGATTGTTGGGGGTCA
AGGCCCTGGGATGGCGGGCATTGGATGAGTCAGCGACCTGGAAGTCGATC
GGGATCCGGGTCACCAAACTGCGCAagcagcaagaggaggggtcCGCCAA
GATCAACATCAACGAATGGATCGGAGAACACATTGTTTGGCGCCGGGAGT
TCCGCACCCGACCCTTCGACATGCGCgtacctcgtccaccacctccaagg
acgaccgaggaggcggccgcggagCTGCCTGGGCCCGTGCGCGTCAAGAG
CACCTTTGCGCTGGGCATCACTCTGCGAGATCCCTCCGACCCGGATGTAC
AACGCGCCTTAGCCAACGCAGTGGACCGGATAGCGCCTGGTGCTGTCCCG
TCTCGCATGGGCCTTGTTTTCGCGGAGTATCGGCGCTTGTGGAACGCCTA
CGAACCCCTATCCCTCCAGCAACGGCAGCATGGCAGGGTGGGACAGACCG
CGGgcaagaagcggaagaagatggaTTCGGAGGCGGCGTCGGCGGCCCTT
GAACCTCCTGCTGTGGCTCCTTCGGCGTCGGATGATTCAGCGATgggaga
agggcaggaaaagggGCAGGTGCAGCTGGTTTTagagggccagggggagg
gccacGACCAGGTTTTCAATAGCgcagagagggaagccaAGGACTACGGC
ATGATGGTAATGCAAGCAGTGGGCGGTGACGAGAGTCACGTGCACATGCT
GAACGGAGGCATGGggatggcggcgatggaaggaggggagggaggccgag
ggggaggcatgACGGGCCCGGGGAGTAGCGGGGGAGCCGTCATGCTAGCG
CCCGCGGACACGGCCTCGTTGCCTTACATGGCGCATCAGGAAAACGAAAT
CCAGCCGCCGATTGCCCGCGAGGGACGGGTGGAGTACCCCCGAGTGcatg
gaggggcggcgggggtaGGGGGTGGGGGCATGGGTCTTGCGACGGGGCTG
CCGGGTCAGAGGGGGCACGTACAAGGGGAGGATGTACATGGCGAGCGACt
gccggtggaggtgggcTCCCTGCACCTGGTCGCGCCCCAGaaccctcctt
tttctcatGGCGGTGACCATGTCCGTAGGGAGGATCTgagtccctccgcc
tcgagaGAGGCGGGGCCCCAGCCTGAGTTTTTCCTACAGCACGGACCGAC
GGACCGACAGGACGTGCAcctggtgggaggaggggaggaatcCGGCGAGT
ACGGGGTCTACCACGTGGAGGGACCCGACgcggaggacggaggcgggatG
GCCTCGCTGGCAAGCATGGCCATGGAGGCTGGCGTGCCTGTGGATTTgga
gcaccaccacccgcaaGAACATTCCCACCACGCAGGAGTGGTTCACGAGG
CTAGCtttcgggaggaggggctggttGAGGACCAGCCACAGGGGGCGCAT
GATCACGAGATGCCCCTCCACCAGGACGCAAACGgggacggcggcggggg
ggcttACCCTGACCAAGagtccgcttccctccctgatCCGCGCAAGTTGG
TGACTCTTTGA

Coding sequence (CDS) from alignment at CM002456.1:1129901..1131961+

>rna1073 ID=rna1073|Name=rna1073|organism=Nannochloropsis gaditana|type=CDS|length=2061bp|location=Sequence derived from alignment at CM002456.1:1129901..1131961+ (Nannochloropsis gaditana)
ATGGTGACAACATCACTGTGCGCTGAATCTTCCGACTttctgcagcagca
gcaatttCCTGGTCCTACGTCAATAGACACGCAGCAACCGCTTGAGAAGC
ATGTACTATCCGTGACGGAGGTGCACGAGACGACCGGGAGTCCCTCGACA
GAGACCACGGACAACCAACACGGACGGCAAAAATTGCAGCAGGGCATAAG
AACCGAACAAATGCCGCATCAGCCGTACCTTTTACAGCCCTTgcccgtcc
tttcccctccaccttctgcGGAAGACAAGAACCAGTTTGCGCCCTCCGCT
ATGCCGCCACAGCTTGCGCTATTTTCACAACCCACAAGTTCATTAACGTT
GGCATTGGAGACTGCGGATCCTCCCGTCTTGGAAGGATTTTACAACTATC
CCAAATCCCAGGAAGGCGTCCATCACGAGCCGTGGATTCGGCTGTTCGGT
GCTATCTTGCAGCCTGCCGCTGACGGCTTTGTCGTCACAGATCACACATG
TACGAGGGGCGTCAGCCTCTGGACCTTTACGTTGCGATTGTTGGGGGTCA
AGGCCCTGGGATGGCGGGCATTGGATGAGTCAGCGACCTGGAAGTCGATC
GGGATCCGGGTCACCAAACTGCGCAagcagcaagaggaggggtcCGCCAA
GATCAACATCAACGAATGGATCGGAGAACACATTGTTTGGCGCCGGGAGT
TCCGCACCCGACCCTTCGACATGCGCgtacctcgtccaccacctccaagg
acgaccgaggaggcggccgcggagCTGCCTGGGCCCGTGCGCGTCAAGAG
CACCTTTGCGCTGGGCATCACTCTGCGAGATCCCTCCGACCCGGATGTAC
AACGCGCCTTAGCCAACGCAGTGGACCGGATAGCGCCTGGTGCTGTCCCG
TCTCGCATGGGCCTTGTTTTCGCGGAGTATCGGCGCTTGTGGAACGCCTA
CGAACCCCTATCCCTCCAGCAACGGCAGCATGGCAGGGTGGGACAGACCG
CGGgcaagaagcggaagaagatggaTTCGGAGGCGGCGTCGGCGGCCCTT
GAACCTCCTGCTGTGGCTCCTTCGGCGTCGGATGATTCAGCGATgggaga
agggcaggaaaagggGCAGGTGCAGCTGGTTTTagagggccagggggagg
gccacGACCAGGTTTTCAATAGCgcagagagggaagccaAGGACTACGGC
ATGATGGTAATGCAAGCAGTGGGCGGTGACGAGAGTCACGTGCACATGCT
GAACGGAGGCATGGggatggcggcgatggaaggaggggagggaggccgag
ggggaggcatgACGGGCCCGGGGAGTAGCGGGGGAGCCGTCATGCTAGCG
CCCGCGGACACGGCCTCGTTGCCTTACATGGCGCATCAGGAAAACGAAAT
CCAGCCGCCGATTGCCCGCGAGGGACGGGTGGAGTACCCCCGAGTGcatg
gaggggcggcgggggtaGGGGGTGGGGGCATGGGTCTTGCGACGGGGCTG
CCGGGTCAGAGGGGGCACGTACAAGGGGAGGATGTACATGGCGAGCGACt
gccggtggaggtgggcTCCCTGCACCTGGTCGCGCCCCAGaaccctcctt
tttctcatGGCGGTGACCATGTCCGTAGGGAGGATCTgagtccctccgcc
tcgagaGAGGCGGGGCCCCAGCCTGAGTTTTTCCTACAGCACGGACCGAC
GGACCGACAGGACGTGCAcctggtgggaggaggggaggaatcCGGCGAGT
ACGGGGTCTACCACGTGGAGGGACCCGACgcggaggacggaggcgggatG
GCCTCGCTGGCAAGCATGGCCATGGAGGCTGGCGTGCCTGTGGATTTgga
gcaccaccacccgcaaGAACATTCCCACCACGCAGGAGTGGTTCACGAGG
CTAGCtttcgggaggaggggctggttGAGGACCAGCCACAGGGGGCGCAT
GATCACGAGATGCCCCTCCACCAGGACGCAAACGgggacggcggcggggg
ggcttACCCTGACCAAGagtccgcttccctccctgatCCGCGCAAGTTGG
TGACTCTTTGA

Synonyms

Publications