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Properties
| Property Name | Value |
|---|
| Product | lsg1p |
| Orig transcript id | gnl|cribi|Naga_100006g105.8668.mrna |
| Orig protein id | gnl|cribi|Naga_100006g105.8668 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1077910..1080075 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1063 ID=rna1063|Name=rna1063|organism=Nannochloropsis gaditana|type=mRNA|length=2546bp
TGACAGTATTACTTCCCACGTGTGATAAATGAGGCAACCTGCACACTTGC
GTGTATCGTAGGGATCATAATCCTGGCGCCTTGGTCTCGATATTCATTAC
TTCCTCGGCTTCATGTGCCCAAACCCAACCTCCTCAAGGAGCTGGGGAAG
TGAAGTGTGATACCACGTTGCCACATCATTAAGCTTGACTGTCCACTTTC
CACCACATTCAAAAAGCTGTCAAGGACACGATTGCAGCAGCTATCGCAAT
TCAGCAACGATTGGTGGCTCCAGCCTTCTCCTTTCCTGCCAATTTCGGAG
CGTGGCAGTCGCTACCATCTTGCTCAGTACCCTTTTTCGCACGAGTGCCT
GGTCGCCGTTCCTCCCCCGATCAAAAGGCGTGGGTTGCACCAGCACGTGG
ACAACTACTTTTACCCGAAGTCGTACTAGCCCTCGCGTGATCACTCCCAT
GAGCGCGGCGAAAAAACGAAGCGGCGCTATCGACGAGGGGACCCCCGGCC
CTACCAAGAAGCCCAAGGCCGGAGACTCGGCCTCGATAAAGTTGCCCGAC
TGGTTCACGCCGGGTCGGCTTCGTACACTCACCACAAGCTGCACAAAACC
GCAAGCGGCTGGCAAGTGCGTTGTGTACTGGATGGCGCGTGACCAACGTG
TGGAAGATAACTGGGCCATGCTCCTGGCCAGGCATTTGGCCACCCAACAA
AACGTGCCCGTGGTGGTGTGCTTCAATCTGACTCCACCCGTCCCTAACGA
CCCCTTGGCTACCTTGCGAGCGTACGGATGGATGTTACGGGGCCTGCAAG
AAGTGGAGGCGGCGCTGAAGCGGAAGCACATACCATTCTACTTGCTCCAG
GAGGGCCCGCCCGAAGACATGGTCCCGGCCCTTGTCTCCGAGCTGCAAGC
GAGCGCAGTCATCACCGATTTCTCGCCCCTTCGTGGGCCCCTGGCAGACG
CCCAAGCCGTGGCAGCCGCCTTGGACGCGGCGGGCCGGCCTCTCTTCCAA
GTAGACGCGCATAACATTGTCCCCGTCTGGCAAGCCTCTCCCAAGCTCGA
GGTTGGGGCCCGGACCATCCGCAAGAAGATCCACGACCTCTTGCCCAAAT
ACTTCACACCTTTCCCCGCCGAGGGCCTGGCGCCGAACGACGCCGCGGCG
GTGAGAGCGCTCCCGGGTCGCTCCGCCCCGCCTGAGGGGTTTGGGTATGA
GAAGGTCCTAGGGCGCCTCCACCTGGACAGCGGGGTCAAGGAGATCGATT
GGCTCCAGCCAGGCGCTCGAGCGGGCTGGGAGAACCTGGATACCTTTCTG
GAGAAGGGCTTGAGATTCTTCGCCGAGAAGCGGAACGACCCCACGGAGCC
GGCCATTTCGAACATGTCGCCATACTTCAACTTCGGGCAGGTCTCCGTCC
AGGCGGTGATGCTGAAGGTCAAAGCAGTCAAGCGCTACCACGACTCCATC
GCCGCCTTCATTGAGGAAGGAGTCGTCAGGCGAGAGCTCTCAGACAATTT
CTGCTTCTACCAGCCCGAATATGACTCGCTGGCGGCGGCAGCAGGGTGGG
CGCAGGAGTCCCTCCGGGTCCACACGAACGATCGGTAAGAGGAGGTTGTC
GGTCCACCCGAGCGGTGCAGTGCCGAAGGTCATTTTTTGTCCTGCAGGCA
ATCCACGAGTCTCTCTTGTGACGATGCAAATCAAGGAGCACGCTGGTCAC
TCCCCCTCCCTCTCTGGCCCCCTTCCTCCCTCATCAGGCGGCAGTTCTGC
TACACGGCCGAGGCCCTGGAGGCCGGTCTCACGCACGACCAGCTTTGGAA
CGCCTCGCAGCTCCAACTGGTGCAGGAAGGGAAACTCCACGGATTCCTGC
GCATGTACTGGGCGAAGAAGATCTTGGAGTGGACCGCCACCCCTGCCGAG
GCCCTGGCCCTCGCTCTGCGCCTCAACGACCGCTTCTCCCTGGACGGGCG
GGACCCGAACGGCTTTGTTGGCGTCGGTTGGTCCGTGATGGGTGTGCACG
ATATGGGGTGGACGGAGCGGCGGATCACTGGGAAGATCAGGTACATGAAC
TACGCTGGCTGCCTTCGAAAATTCGACGTGGCAAAGTTTTGTGCCCGCTA
CCCTGCTGCCATCGAAGCGGCCCAAAAAATCCAGTCCACGACACAACCCA
ACGGGGAGGGCCCAGTTCCTATAAAAGCAGCGTCGGGGAAGGAAGGAGGC
GCGGAAAAAGGGGGGGAGGGAGGGAAAGCGGGAAAGGACAAGTTGAAGCA
GTGAGGGCGTTCGGTGGTCGGGGTCCTGTACAGAGGCGAGTGAGGGACGG
TGTGGCGGGACGTTTTATAAGAGAATGGTGATGGTTTGGGCCCGATATCA
AGGTGGGGAGTGGGCAACGGGGGTCGGAATGGACGCAGCGGTCGTGGAAA
TGACAAAGACCATGCTCCCGGGCTCTCGAGGTGACTTGTGTGCGTTTGCT
TCCATATTTGTACGATACTTTGCGCACGATCGTTACATCCTCCCTCGCCG
TCCCCTGCCCCTACACCCGACCCGCAAAATGTGGCATGGTCACTCT back to topprotein sequence of rna1063 >rna1063-protein ID=rna1063-protein|Name=rna1063|organism=Nannochloropsis gaditana|type=polypeptide|length=472bp
MRKHQQQGPAVVGALEQQQLDGRKQLSSVLEMNSLDDFLDTAMMAQRDFS
AIKERDLLVLDAKTGGLTSILPRGQVTPGTDKGMTTFAFRQLKVPRRPKW
HTGMSAAALDRAEKASFLEWRREIAQLEETSGERAKVTPFEKNLEVWRQL
WRVLERSHVIVQIVDARDPLFYYSEDLHAYAAEMHPARECLVLVNKADYL
TPAQRGEWAAYFQKRGWNHAFFSARSAQELLTVQARKERTELIARLKGLA
ARVGGAFAAAALEAGHAAGKPTVGMVGFPNVGKSSVINVLMGVTPLEHDR
VRVAVSSTPGKTKHFQTLPLDPETMLCDCPGLVFPSFVATTADMVCAGVL
PINQLREHMAPVELLCRRLPGPLLRRAYGLKEQTKDGEETPALASAKESG
GSSSGCETARTFLGDLCGARGYWTQGSGVADVNRAARMVLRDYVEGRLVY
SHPPPGLTAEEGRAGRGRRGRM back to topmRNA from alignment at CM002456.1:1077910..1080075- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1063 ID=rna1063|Name=rna1063|organism=Nannochloropsis gaditana|type=mRNA|length=2166bp|location=Sequence derived from alignment at CM002456.1:1077910..1080075- (Nannochloropsis gaditana)
ATGCGAAAACATCAGCAGCAAGGTCCAGCAGTAGTCGGGGCGCTTGAGCA
GCAGCAACTAGATGGACGCAAGCAATTGTCATCCGTTTTGGAGATGAATT
CCTTGGACGATTTCTTGGATACAGCCATGATGGCGCAGCGAGATTTCTCT
GCCATTAAAGAGCGGGATCTGCTCGTGCTCGACGCAAAAACGGGTGGATT
GACCAGCATTTTGCCGCGCGGGCAGGTCACGCCAGGCACGGACAAAGGAA
TGACTACCTTCGCTTTCCGCCAGCTCAAAGTCCCGCGTCGACCTAAATGG
CACACGGGCATGTCCGCAGCTGCCTTGGATCGAGCAGAAAAGGCCTCGTT
CTTGGAATGGCGGCGGGAGATCGCCCAGCTGGAGGAGACATCGGGAGAGA
GGGCCAAAGTGACCCCGTTCGAGAAGAATTTAGAGGTCTGGCGGCAGCTT
TGGCGGGTCTTGGAGCGGAGCCACGTGATTGTGCAGATTGTCGATGCCCG
CGATCCATTATTTTACTACTCGGAAGACCTGCATGCCTACGCGGCGGAAA
TGCATCCGGCCAGGGAGTGCTTGGTGTTGGTGAACAAGGCAGACTATCTG
ACGCCGGCCCAGCGGGGGGAATGGGCCGCTTACTTTCAGAAGCGCGGATG
GAACCATGCCTTCTTTTCGGCACGAAGTGCGCAAGAATTGTTGACGGTTC
AGGCGAGAAAAGAAAGGTTAAAGGAACTGGAAGGGCGGGATGGGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGAAGAGGAAGAAGAAGAAGAGGAG
GAGGAGAAGGAGGAGGAGGAAGCGGGAGAGGAGGAGGAGGAAGGGGAAGA
GAGGATCAGAAGAAGGAAGGAGAGAGGAGGAGGGGAGGAAGGAGAAGCGG
GGGGACCGTCTGCCCCTGTCAAGGTGTCGTGCTCGCGCGGGGAAAAGGAG
GAGGAGCCGGAGAGCAAGACGACGACCTTCCCGCCCATCCTGACGAGGAC
GGAGCTGATTGCCCGCCTGAAGGGGCTGGCGGCCCGCGTGGGCGGGGCCT
TTGCGGCGGCCGCCCTGGAGGCCGGGCACGCGGCGGGGAAGCCCACCGTG
GGCATGGTGGGTTTCCCCAACGTGGGGAAGAGCTCGGTGATCAACGTGCT
GATGGGGGTGACGCCCTTGGAGCACGACCGGGTCCGCGTGGCCGTCTCGA
GCACGCCGGGGAAGACGAAGCACTTCCAGACCCTCCCCCTCGACCCCGAG
ACCATGCTTTGCGACTGCCCGGGCCTCGTCTTCCCCTCCTTCGTGGCCAC
CACGGCGGACATGGTCTGTGCGGGCGTCCTTCCCATCAACCAGCTTCGCG
AGCACATGGCTCCCGTCGAATTGCTCTGCCGCCGCCTGCCTGGCCCCCTT
CTCCGCCGCGCCTACGGCCTCAAGGAGCAAACAAAGGACGGGGAGGAGAC
GCCTGCGTTGGCGTCGGCGAAAGAGAGCGGGGGTAGCTCGAGTGGCTGCG
AGACGGCGCGGACGTTCTTGGGGGACCTGTGCGGGGCCCGCGGGTACTGG
ACGCAAGGCTCGGGCGTGGCGGACGTGAACCGGGCGGCCCGGATGGTCTT
GCGCGACTACGTGGAGGGCAGGCTGGTGTATAGCCACCCGCCTCCGGGGC
TGACGGCGGAGGAAGGCAGGGCGTTCGAGGCGGCGACGAGGGGGCGGGGC
GGGGGAAAGGGCCCAGGTCTGAGCGAGGGGTTGAGGAGGCTGGCTCTAGG
GGAGGGGAGGGACAAGGAGGAGGGAGGGGGGATGGGAGGGGGGAAAGGAG
GGGGTGATGGTTCGCGGGGAGGGCAACAAGGGGAGGTGGAGGGGTTGGGG
GAGGAAGGGGAGGAGGAAGCGGAGCTCGTGGGCCTTGAGGGGGAGGAGGA
GGAGGCATCGACCGTGGGAGAGGGGAGCCGGTCGGGCAAAGTGCGGGTGC
GACCAACGAAACGGTGGGGGAAGAAAGGGAAGAAATTGCGGAACAAGACG
CCGTACGAAGATACAGAGGGTGGAGTGGGAGGCCGGGCGCCGGGGGGGGG
CGCGCGGGTCTTGGGGAGGAAGGTGGTGGGAGGGGGGGAAGGCGGGTTTA
CGAGAGTGACCATGCCACATTTTGCGGGTCGGGTGTAGGGGCAGGGGACG
GCGAGGGAGGATGTAA back to topCoding sequence (CDS) from alignment at CM002456.1:1077910..1080075- >rna1063 ID=rna1063|Name=rna1063|organism=Nannochloropsis gaditana|type=CDS|length=4257bp|location=Sequence derived from alignment at CM002456.1:1077910..1080075- (Nannochloropsis gaditana)
GGGCAGGGGACGGCGAGGGAGGATGTAAGACGGAGCTGATTGCCCGCCTG
AAGGGGCTGGCGGCCCGCGTGGGCGGGGCCTTTGCGGCGGCCGCCCTGGA
GGCCGGGCACGCGGCGGGGAAGCCCACCGTGGGCATGGTGGGTTTCCCCA
ACGTGGGGAAGAGCTCGGTGATCAACGTGCTGATGGGGGTGACGCCCTTG
GAGCACGACCGGGTCCGCGTGGCCGTCTCGAGCACGCCGGGGAAGACGAA
GCACTTCCAGACCCTCCCCCTCGACCCCGAGACCATGCTTTGCGACTGCC
CGGGCCTCGTCTTCCCCTCCTTCGTGGCCACCACGGCGGACATGGTCTGT
GCGGGCGTCCTTCCCATCAACCAGCTTCGCGAGCACATGGCTCCCGTCGA
ATTGCTCTGCCGCCGCCTGCCTGGCCCCCTTCTCCGCCGCGCCTACGGCC
TCAAGGAGCAAACAAAGGACGGGGAGGAGACGCCTGCGTTGGCGTCGGCG
AAAGAGAGCGGGGGTAGCTCGAGTGGCTGCGAGACGGCGCGGACGTTCTT
GGGGGACCTGTGCGGGGCCCGCGGGTACTGGACGCAAGGCTCGGGCGTGG
CGGACGTGAACCGGGCGGCCCGGATGGTCTTGCGCGACTACGTGGAGGGC
AGGCTGGTGTATAGCCACCCGCCTCCGGGGCTGACGGCGGAGGAAGGCAG
GGCATGCGAAAACATCAGCAGCAAGGTCCAGCAGTAGTCGGGGCGCTTGA
GCAGCAGCAACTAGATGGACGCAAGCAATTGTCATCCGTTTTGGAGATGA
ATTCCTTGGACGATTTCTTGGATACAGCCATGATGGCGCAGCGAGATTTC
TCTGCCATTAAAGAGCGGGATCTGCTCGTGCTCGACGCAAAAACGGGTGG
ATTGACCAGCATTTTGCCGCGCGGGCAGGTCACGCCAGGCACGGACAAAG
GAATGACTACCTTCGCTTTCCGCCAGCTCAAAGTCCCGCGTCGACCTAAA
TGGCACACGGGCATGTCCGCAGCTGCCTTGGATCGAGCAGAAAAGGCCTC
GTTCTTGGAATGGCGGCGGGAGATCGCCCAGCTGGAGGAGACATCGGGAG
AGAGGGCCAAAGTGACCCCGTTCGAGAAGAATTTAGAGGTCTGGCGGCAG
CTTTGGCGGGTCTTGGAGCGGAGCCACGTGATTGTGCAGATTGTCGATGC
CCGCGATCCATTATTTTACTACTCGGAAGACCTGCATGCCTACGCGGCGG
AAATGCATCCGGCCAGGGAGTGCTTGGTGTTGGTGAACAAGGCAGACTAT
CTGACGCCGGCCCAGCGGGGGGAATGGGCCGCTTACTTTCAGAAGCGCGG
ATGGAACCATGCCTTCTTTTCGGCACGAAGTGCGCAAGAATTGTTGACGG
TTCAGGCGAGAAAAGAAAGGGGCAGGGGACGGCGAGGGAGGATGTAAGAC
GGAGCTGATTGCCCGCCTGAAGGGGCTGGCGGCCCGCGTGGGCGGGGCCT
TTGCGGCGGCCGCCCTGGAGGCCGGGCACGCGGCGGGGAAGCCCACCGTG
GGCATGGTGGGTTTCCCCAACGTGGGGAAGAGCTCGGTGATCAACGTGCT
GATGGGGGTGACGCCCTTGGAGCACGACCGGGTCCGCGTGGCCGTCTCGA
GCACGCCGGGGAAGACGAAGCACTTCCAGACCCTCCCCCTCGACCCCGAG
ACCATGCTTTGCGACTGCCCGGGCCTCGTCTTCCCCTCCTTCGTGGCCAC
CACGGCGGACATGGTCTGTGCGGGCGTCCTTCCCATCAACCAGCTTCGCG
AGCACATGGCTCCCGTCGAATTGCTCTGCCGCCGCCTGCCTGGCCCCCTT
CTCCGCCGCGCCTACGGCCTCAAGGAGCAAACAAAGGACGGGGAGGAGAC
GCCTGCGTTGGCGTCGGCGAAAGAGAGCGGGGGTAGCTCGAGTGGCTGCG
AGACGGCGCGGACGTTCTTGGGGGACCTGTGCGGGGCCCGCGGGTACTGG
ACGCAAGGCTCGGGCGTGGCGGACGTGAACCGGGCGGCCCGGATGGTCTT
GCGCGACTACGTGGAGGGCAGGCTGGTGTATAGCCACCCGCCTCCGGGGC
TGACGGCGGAGGAAGGCAGGGCATGCGAAAACATCAGCAGCAAGGTCCAG
CAGTAGTCGGGGCGCTTGAGCAGCAGCAACTAGATGGACGCAAGCAATTG
TCATCCGTTTTGGAGATGAATTCCTTGGACGATTTCTTGGATACAGCCAT
GATGGCGCAGCGAGATTTCTCTGCCATTAAAGAGCGGGATCTGCTCGTGC
TCGACGCAAAAACGGGTGGATTGACCAGCATTTTGCCGCGCGGGCAGGTC
ACGCCAGGCACGGACAAAGGAATGACTACCTTCGCTTTCCGCCAGCTCAA
AGTCCCGCGTCGACCTAAATGGCACACGGGCATGTCCGCAGCTGCCTTGG
ATCGAGCAGAAAAGGCCTCGTTCTTGGAATGGCGGCGGGAGATCGCCCAG
CTGGAGGAGACATCGGGAGAGAGGGCCAAAGTGACCCCGTTCGAGAAGAA
TTTAGAGGTCTGGCGGCAGCTTTGGCGGGTCTTGGAGCGGAGCCACGTGA
TTGTGCAGATTGTCGATGCCCGCGATCCATTATTTTACTACTCGGAAGAC
CTGCATGCCTACGCGGCGGAAATGCATCCGGCCAGGGAGTGCTTGGTGTT
GGTGAACAAGGCAGACTATCTGACGCCGGCCCAGCGGGGGGAATGGGCCG
CTTACTTTCAGAAGCGCGGATGGAACCATGCCTTCTTTTCGGCACGAAGT
GCGCAAGAATTGTTGACGGTTCAGGCGAGAAAAGAAAGGGGCAGGGGACG
GCGAGGGAGGATGTAAGACGGAGCTGATTGCCCGCCTGAAGGGGCTGGCG
GCCCGCGTGGGCGGGGCCTTTGCGGCGGCCGCCCTGGAGGCCGGGCACGC
GGCGGGGAAGCCCACCGTGGGCATGGTGGGTTTCCCCAACGTGGGGAAGA
GCTCGGTGATCAACGTGCTGATGGGGGTGACGCCCTTGGAGCACGACCGG
GTCCGCGTGGCCGTCTCGAGCACGCCGGGGAAGACGAAGCACTTCCAGAC
CCTCCCCCTCGACCCCGAGACCATGCTTTGCGACTGCCCGGGCCTCGTCT
TCCCCTCCTTCGTGGCCACCACGGCGGACATGGTCTGTGCGGGCGTCCTT
CCCATCAACCAGCTTCGCGAGCACATGGCTCCCGTCGAATTGCTCTGCCG
CCGCCTGCCTGGCCCCCTTCTCCGCCGCGCCTACGGCCTCAAGGAGCAAA
CAAAGGACGGGGAGGAGACGCCTGCGTTGGCGTCGGCGAAAGAGAGCGGG
GGTAGCTCGAGTGGCTGCGAGACGGCGCGGACGTTCTTGGGGGACCTGTG
CGGGGCCCGCGGGTACTGGACGCAAGGCTCGGGCGTGGCGGACGTGAACC
GGGCGGCCCGGATGGTCTTGCGCGACTACGTGGAGGGCAGGCTGGTGTAT
AGCCACCCGCCTCCGGGGCTGACGGCGGAGGAAGGCAGGGCATGCGAAAA
CATCAGCAGCAAGGTCCAGCAGTAGTCGGGGCGCTTGAGCAGCAGCAACT
AGATGGACGCAAGCAATTGTCATCCGTTTTGGAGATGAATTCCTTGGACG
ATTTCTTGGATACAGCCATGATGGCGCAGCGAGATTTCTCTGCCATTAAA
GAGCGGGATCTGCTCGTGCTCGACGCAAAAACGGGTGGATTGACCAGCAT
TTTGCCGCGCGGGCAGGTCACGCCAGGCACGGACAAAGGAATGACTACCT
TCGCTTTCCGCCAGCTCAAAGTCCCGCGTCGACCTAAATGGCACACGGGC
ATGTCCGCAGCTGCCTTGGATCGAGCAGAAAAGGCCTCGTTCTTGGAATG
GCGGCGGGAGATCGCCCAGCTGGAGGAGACATCGGGAGAGAGGGCCAAAG
TGACCCCGTTCGAGAAGAATTTAGAGGTCTGGCGGCAGCTTTGGCGGGTC
TTGGAGCGGAGCCACGTGATTGTGCAGATTGTCGATGCCCGCGATCCATT
ATTTTACTACTCGGAAGACCTGCATGCCTACGCGGCGGAAATGCATCCGG
CCAGGGAGTGCTTGGTGTTGGTGAACAAGGCAGACTATCTGACGCCGGCC
CAGCGGGGGGAATGGGCCGCTTACTTTCAGAAGCGCGGATGGAACCATGC
CTTCTTTTCGGCACGAAGTGCGCAAGAATTGTTGACGGTTCAGGCGAGAA
AAGAAAG back to top
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