rna1059, rna1059 (mRNA) Nannochloropsis gaditana

Overview
Namerna1059
Unique Namerna1059
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1231
Alignment locationCM002456.1:1070658..1071397 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g109.8629.mrna
Orig protein idgnl|cribi|Naga_100006g109.8629
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1070658..1071397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100006g109gene1020Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1059rna1059-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29540.1cds1058Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1059 ID=rna1059|Name=rna1059|organism=Nannochloropsis gaditana|type=mRNA|length=1231bp
CACGACTACACATCCTCAAAGGCCATTTTCCATTCATGTCAGAGGTTGTA
GATACCGCGACCGGAGGGGGAATGAAAGCCTGATGACATGGAGGGAAGAC
CGCGACAGTAGCCACAGGGATCAAGCGCCGTTTTACTCCTTCCTTACCTC
TTCTTGCCCTAGCGTGCACGAATAAAAATTTCCAGCATGGGAAAGAAAAA
GGTCTTGTTGATGGGCAAATCAGGTTCTGGCAAGACGTCCATGCGCTCTT
TCATCTTTGCGAACTACATGGCACGGGATACGATGCGGCTGTCCCCTACT
CTGGACGTGGAACATCATCACGTCCGTTTCCTGGGCAATTTAGTTCTCAA
CCTGTGGGATTGCGGAGGGCAGGATGCATTCTACGAGTCGTATTTCGACA
GTCAGCGGGATTTGATTTTTCGTTCTGTGGAAGTCCTCATTTACGTTTTC
GACGTCGAGAGCGCGGACACTGAAAAGGATTTGAGTCACTTCATGGGGGT
GCTGGAGGCCATCGACCAGTACTCTCCCGACGCCAAGCTCTTTGTGCTCA
TCCATAAGATGGACCTTGTGGCGGAGGAAGACCGAGAAAGCGTCTTTCTG
GATCGGCAAAAAATGATCCTGGGACTAGCGACCTCTCGTTTCAACTTCAC
GGTGACCTTCTTCAAGACGTCCATCTGGGATGAGACGCTCTACAAGGCCT
GGTCGGGCATCGTCTATCAGTTGGTGCCCAACGTGAAGGCCCTGGAGGAG
CAGCTGAACAGTTTGTGCGAGATTTGCGGGGCGGATGAGATGGTCCTCTT
CGAGAGGGCGACCTTCCTGGTCATTGCCCACGCCACACATGCGGCCCACT
CAGACGTGCATCGCTTCGAGAAGATCTCCAACATTATCAAGCAATTCAAG
CTCAGCTGCGGCAAAACGCAGGCTCAGTTTCACGGCATGGAAGTGGGGAA
CTCTGCATTCACGGCTTACATAGATCTCTTCACGAGTAACACCTACATCA
TGGTCATTCTCTCCGACTCGCGCATCCATACTTCTACCACTCAAATAAAT
GTGAAGGCGGCTCGGGCAGCTTTCGAGGCATTTGTGCCGTAGAGAGAGGG
GAACTTCCATACTTGTAAATAAGGCGTACATGTAACCCAGAACTGGACCC
TAAAAAACTGAATCATCCAGCGACAGGAAGACCGTGCGACTTGAAACTAT
TGGTTTGTTTCTATTTCTCTTGTTTCAATTA
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protein sequence of rna1059

>rna1059-protein ID=rna1059-protein|Name=rna1059|organism=Nannochloropsis gaditana|type=polypeptide|length=228bp
MPAVTCTSGACSASILPRPSSRSRNPLFIHSLTFTQTAVVMRTMGSVVMR
GARNARRASQASGSGGRTHNVVGFAGPRITLTRRGVTIPSARANRRLQRQ
YEFGMALRQQALPASVVMLDAATGVETRIAALFMGGGLDDDDGTVRCLWV
SYRPRFLFFLSPFLTPVDVPSPLPLPSPSPTPPRVQMIAGYLCPASCCLL
HNIVDIYEPTLRPLSTVGGRQLSERLAS
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mRNA from alignment at CM002456.1:1070658..1071397+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1059 ID=rna1059|Name=rna1059|organism=Nannochloropsis gaditana|type=mRNA|length=740bp|location=Sequence derived from alignment at CM002456.1:1070658..1071397+ (Nannochloropsis gaditana)
ATGCCAGCTGTCACATGCACGTCAGGAGCATGCAGCGCCAGTATCTTACC
CAGGCCGTCTTCCCGCTCGCGTAACCCCCTCTTTATTCATTCGTTGACAT
TCACACAGACGGCGGTGGTAATGAGGACGATGGGTAGCGTCGTTATGCGT
GGTGCTCGCAATGCGCGCAGAGCAAGCCAAGCAAGTGGTagcgggggaag
gacacATAACGTGGTAGGCTTCGCAGGTCCACGCATTACTCTCACGCGAA
GAGGGGTAACTATTCCTTCGGCCCGAGCAAATAGACGTCTACAACGCCAG
TATGAATTCGGCATGGCTCTTCGGCAACAAGCATTACCTGCCTCCGTGGT
GATGCTGGATGCGGCCACTGGGGTGGAGACACGCATTGCGGCGCTTTtca
tgggaggagggctggacGATGATGATGGAACGTGAGTGCTTTCATGTGTT
GTGTAAATTCAAAAGTGGCAGGGTGAGTGGAGAGGGTGCGTTGTCTGTGG
GTTTCTTACCGTCCACgatttctctttttcctatctcctttcctcaccCC
AGTTGACgtgccatctcctcttcctcttccttctccatcacCAACCCCTC
CGCGCGTGCAGATGATTGCCGGATACCTCTGTCCAGCATCTTGTTGCCTC
TTACACAATATTGTTGACATCTACGAGCCCACGTTGCGTCCGTTAAGCAC
TGTAGGAGGACGGCAATTATCTGAAAGACTAGCTAGTTGA
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Coding sequence (CDS) from alignment at CM002456.1:1070658..1071397+

>rna1059 ID=rna1059|Name=rna1059|organism=Nannochloropsis gaditana|type=CDS|length=1374bp|location=Sequence derived from alignment at CM002456.1:1070658..1071397+ (Nannochloropsis gaditana)
ATGCCAGCTGTCACATGCACGTCAGGAGCATGCAGCGCCAGTATCTTACC
CAGGCCGTCTTCCCGCTCGCGTAACCCCCTCTTTATTCATTCGTTGACAT
TCACACAGACGGCGGTGGTAATGAGGACGATGGGTAGCGTCGTTATGCGT
GGTGCTCGCAATGCGCGCAGAGCAAGCCAAGCAAGTGGTagcgggggaag
gacacATAACGTGGTAGGCTTCGCAGGTCCACGCATTACTCTCACGCGAA
GAGGGGTAACTATTCCTTCGGCCCGAGCAAATAGACGTCTACAACGCCAG
TATGAATTCGGCATGGCTCTTCGGCAACAAGCATTACCTGCCTCCGTGGT
GATGCTGGATGCGGCCACTGGGGTGGAGACACGCATTGCGGCGCTTTtca
tgggaggagggctggacGATGATGATGGAACGGTGCGTTGTCTGTGGGTT
TCTTACCGTCCACgatttctctttttcctatctcctttcctcaccCCAGT
TGACgtgccatctcctcttcctcttccttctccatcacCAACCCCTCCGC
GCGTGCAGATGATTGCCGGATACCTCTGTCCAGCATCTTGTTGCCTCTTA
CACAATATTGTTGACATCTACGAGCCCACGTTGCGTCCGTTAAGCACTGT
AGGAGGACGGCAATTATCTGAAAGACTAGCTAGTTGAATGCCAGCTGTCA
CATGCACGTCAGGAGCATGCAGCGCCAGTATCTTACCCAGGCCGTCTTCC
CGCTCGCGTAACCCCCTCTTTATTCATTCGTTGACATTCACACAGACGGC
GGTGGTAATGAGGACGATGGGTAGCGTCGTTATGCGTGGTGCTCGCAATG
CGCGCAGAGCAAGCCAAGCAAGTGGTagcgggggaaggacacATAACGTG
GTAGGCTTCGCAGGTCCACGCATTACTCTCACGCGAAGAGGGGTAACTAT
TCCTTCGGCCCGAGCAAATAGACGTCTACAACGCCAGTATGAATTCGGCA
TGGCTCTTCGGCAACAAGCATTACCTGCCTCCGTGGTGATGCTGGATGCG
GCCACTGGGGTGGAGACACGCATTGCGGCGCTTTtcatgggaggagggct
ggacGATGATGATGGAACGGTGCGTTGTCTGTGGGTTTCTTACCGTCCAC
gatttctctttttcctatctcctttcctcaccCCAGTTGACgtgccatct
cctcttcctcttccttctccatcacCAACCCCTCCGCGCGTGCAGATGAT
TGCCGGATACCTCTGTCCAGCATCTTGTTGCCTCTTACACAATATTGTTG
ACATCTACGAGCCCACGTTGCGTCCGTTAAGCACTGTAGGAGGACGGCAA
TTATCTGAAAGACTAGCTAGTTGA
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Synonyms
Publications