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Properties
| Property Name | Value |
|---|
| Product | sentrin-specific protease 2 |
| Orig transcript id | gnl|cribi|Naga_100050g1.6842.mrna |
| Orig protein id | gnl|cribi|Naga_100050g1.6842 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1058186..1060432 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1055 ID=rna1055|Name=rna1055|organism=Nannochloropsis gaditana|type=mRNA|length=5162bp
GAAGCGGTGTAAACAAATACGTAGGGACCCCAGCTCGACTTTGCTGCTTT
CCATTCCATCTGATCGCTTGTTGGTAATCGCCTGTGATCCCTTTAGTTCC
TGTATATAAGAATTATTGGCCAAGCCCTGCGTTGGGACCATGACCGAACC
TTCTCCTGACCCCTTCAACTCCTTGCCAGCGGACGTTTCCTCCTTCTGCA
AAATCAATGAACGTGGCATAGGTAATCTTGACCTTGCCGACTTAATGAAC
ACAATATACATCAATTTATTGGTGTTCGTTCTGCTGCTCATACTTTTTGA
AAAGCTGCGGCACGTCAAGAGTGTCTACTTCTGCAGGGAGGAGTGGATGC
GGCATCGGAGACCACCGGATCTTCCTCCAGGCTTTCTTACGTGGGTCCGT
CCTCTTATGTCCATACCCAAGGAGCGTATCTTGCAGCTTGCAGGCCTTGA
CGCCTACATGCTGTTACGCTACATCCAAATGTGCCTCAAGATCTGTTTAT
GCTCGGGTTTTTTTGGATTAGTCGTTCTCCTGCCTATGTACGTGCACGGA
GACAGGTCCAACCCTTCCGATGGCCGTCTCAGCACCATTATGAAGGATCC
TAAACTTATATCGTTGGGTAATATCAAGGAACTACATTGGCTTTGGGTAC
CTATCGCCATTGCTTATTTCACGACGTTCCATACCCTCTACCTGCTGAAA
AGCGAATACAAGCGTTTCCTGACTTTGCGCCTCACGTTTTTAAGCGTGGG
AGATCCAGACGTGAATATTCAAAAATCGTTTTCCGTCATGGTAGACCGTA
TTCCACTGGAGTACAGAAATAATGTTGGCTTATACACGCTATTTGACGAA
ATTTTCCCAGGGGACGTTCACAGCGCGGTGGTAGCTCTGCGGGCAGACGC
TTTGGAGGACTTAGTCCAGAAGCGAGCAGCCTTGGTCGATAGTCTGGAAA
AGGCCTTGGCGACTCGCTCCGTCTCAAATCGAGAGCCCATGATCTTTGTC
CCCCACCCCCACGGGATCCAGCTGTGGAACCGTTTGTGTCGCCGAGGCAG
CCGCGTCGAGGCGGTCGCGCACTATCAGCGGGCCTTAGATGAGCTCAACG
CCAAGATCACCAATGTCCAGATCACGATTCGACAGGCCTCGGAGGATATG
GACCGGAAGGAGGAGAAGCGATACGAGTCCCGACGGCAGCTAGTTCAGCA
GAACAGCGGCTCGCAAGCCGGGGCGGAGGGGGCCGTGGCGGCGGGCTTGC
TGCATGGCGTGAGCAGCAGGAAGGCCTCGATCGCGCCCCTAGTACTGGGC
AATGCGGATTCACGCAGCCAGTTGATGAGCCGGGAGTCTGCCGACCAAGT
CCTGGCCGTGGAGGGGGCCACCCACCTGGACCCCGACGGCACCACGATCG
TGATCGACAACGAGGCGGGCGACACCTCCAGGATTGGCGGCGTACTGCCC
AGGCACACTATTCAACGCAGGCGTCCGAGCTTTTCCAAGACCTTGTCGCG
GGGAAGAAGGGCGATTTCAGGGAGTGCGTCCACCCCTGCGTTGACCGCGC
TTTCAGACCCGAGGCCCTGTAGCGCGCCTCCCCAAGCTCCACCGGCCGCT
GGGGAAAGCGATCCCGCCGTGGGTGAAGCCGCCGACAGGAACCAAAATCC
TGCTGACAGGCGGGGCCGTGTCGGTGGTGTGATGCGCGCTCCACCGCTGG
CATCGAATGTCTTGGTGGAAGGGGAGAACGAAGACGAAGGCGGGGAGGAA
GACCGTGCGCAAGTCGGGGGGGGGGAGGAGCGGGTTCCCGCACAGCAAAG
CCTGTGCTGTTGGTTGCGGCGTGGATTCATGCGCGCCTTACGGGCAGGGA
AACGGACAGGCATGGGCGCAGTCGAGGCAGGACAAGAGGTCACCAAAGTC
TTGAGCATGCTGGCCGTCAATCCTAGCATGAGCTCAACCGGTTTTGTAAC
CTTCAAATCCATGACCTCGGCCGCCGTCGCCTCTCAATCGCTCCTGACCA
TGGAGCCCTTTATGTTCACCATCAATCCTGCCCCCGAGCCTCGCGACGTC
GTGTGGCAAAATTTGACCGCCCCTATACGCCTCGTGGAATGGAGGGAGAC
CAGCACCACCGTCGTAATCACCATTTTGAGCCTCTTTTGGGGCGCGTTGG
TGTCATCCCTGTACAAAATGCAAAGCCAGCTGCAAGCCTGGGGTAATTCA
GATCCAGCCTTGGATAGGCTGGGGTCCCTCGGTCGATTCGCGCTCTTCCT
TGGGATCGACTTCGTTCCCACTTTGCTGCTCCTCATCATCCTGGCTATCC
TGCCGAACCTTTTCTGGTGGCTCAGTCGGAACTATGAACGCATCCGCACA
AACAGTGACATCGACGCCTCGGTGATGGCGCGCTACTTTTACTATCAGAT
GGTCAATATCTATGCGACCATCGTGGGCGGGGCGCTCTTGGACGAGGTGA
TGGCGATCATCCAGGATCCGCGCGTGGTTGTTCGTGTGCTAGGGTGCCAG
GTTCCTGTCGTCGCCGTCTACTTCATGCAGATCATCGTGACCAAGGCGTT
CTCGGCGCTCATGTGGGAGTTTACCAGAGCTTGGCCCTTGATCCGGGTAG
CTTTCCTCCATTTCTTCACGGATCACGACAGAAAGACTGCCCGCCAGCGA
CGCGCCCGCGTTTACGTGCCTATCATGGCCTACGGCTGGACCTATCCCTC
CCTCCTCCTCGTGTTGACAATTTGTCTGACTTACGTTGTGATCATGCCCA
TCGCCCTCGTCATCGGCGCTGTCTACTTCTTCCTCATTGAGATCCTCTAT
ACCTACCACGTTCTGTACGTCTACGTGCCCCAGTACGAAGGCGGCGGGCG
CATGTGGTACAGCGTCTTTGACAGGACCCTCGTGGCCCTCCTTTTGTCCC
ACCTCACCCTCATCGGCTACATGGCGGTCCTGGGTGCGGGGTACCTGATC
CCTTTTCTCCTTCCACTTCCCTTGATTCTTATCGGCTTCTACCGTCACTG
CCAACATGGCTACGAAGAGGCTTCTTTGAAGCTCTCCCTGCTCGCCGCCC
GGCGCATTGACGACTGCCTCCGGGAAGAAGACTACAGCTCCTCCTCCCCC
CCCCCCCGTGTCTCTCCTTCCCGTCCCTCCACGTCTTCTCGTCTTATTGC
CGCCGGGATGTCATCCGCCCGATCCAGCCCAGGAAGGGAAGCTGAGGCGT
CGGCTTCCTTCTCGCAGGGTGCGAACGAGAGCCACGTCACAGGTGACACC
GGCAGCGGTCAGAATCAGCACGTCCAGGGCCCCACTTCTCCCACTGCAGC
CCTTCCCAAGGCACCGGGTGGTAAGCGCCGCTTTCCGACCGCTGTCAACG
CCGAGGGAGAAGATACAGAGCCCGAACCCCCCCGTGAGGCCCCGCTCATC
GTCGATCACTTCCAAATCAGTGCCTACGCCCAACCATCCCTCACGGAGGG
TCCTCAGGAGGCGGAGGTCTTGCCTTGGCATCGCCAGCATCCTGACGCGC
AGGGAGCAGCAGGGACAGGCAGCGGAGACCTGGAGCAGCCCCGCATAGGT
GACATGGACACCTGGGGTCCACGCCCTGTCTCTCTCACTCATTCTGATTC
CGCGTTTGCGAAGCGAATGAAAATCTCGGAAGCATTGGAGGACCTGCGCG
TTCCTCTTAGTCCCTTCCCAACAAACTCAGTGTTGAATCGCTCCACTGCA
GGTTCTGAAGGCCATTCACCCACTAGAAGCGGTGATGTCGGCGTTGAGGG
ATAAATACTCAAAGGGAACAACAGCGGTCACACGAACGACCGCATGACGA
CAGTGGAGGAGCGTCACTATCAAGAAGATAGTGAAGCACGAGAAGACAAC
CTGGCGGGTCTCGGCACAGATAGGTGCGATTCGGCGGAGAAGGACTGACA
TTGGTGCCGATGCTGTTCAAAACGTTACATATTTGAAGTGATAATGTCCT
AATATTTATAACCCGGGCCTCTTATTCGGGAAAATTCCGATACTGGGTAT
AATTTACATGATCGGAAAAAGGCTCTCAAAAGTTGACGCGACTTCGAAAT
AAGCGCGAAAGAAACTGATTTGTCTTCAATGACATCCGTTGCTGCTTCGT
AAGTTACATATTACTGTTGTCGCATGATCACCATTGTATTGATTCGAGCG
CAATGCCGTGCTCTCGTAAGACACTCGGCAGCAGCATTTCTTTATCTACA
TGACCCTCGGGAGGAATATTGCCCTCGACATCGTCTTGCCTTGTACAGCC
ATTGGCAATACAGCCTTTGTCCCCACAATTTTCTCCCAGAGGAAATGCTA
CACTTGCGGCGGCAATTTCCGCAAGCAAAGACTCCCGTTCACGCGCTCGT
TGCCAGGCCAGTCGCCGGTCAATTTCGTCCAGTACCTCGACACTCACATT
AGAATCGAATTTACGCGCGAAAAGAAATGTTTCTCGCTTTGGTTCTGCGG
GCATATCAGCGCCTGGCCGCGGGATCAGATGATCGATCTCCTCCGTTCGC
ACCAATAAAGGAGACCGGCCGCAGATACGAGGGTCGGGTTGGAGACATTT
GCTAGGGTCTGCGGCCGCTCCTTTCTCGTCTTCCCACACGTCAAACGTTA
GATGGAGGTAATTTGTGTTGCAATGATGATGACAGTAAGGAGATGACTTG
AGAACAGTGGCGAAGAAATTCTCGTCAGGGATGAGTATGTGCTGGGCGTA
GGCTGTGTAGGGTCCAACGAAGTTGTCGTCTGTGAGCAGGTAGTGAGCAA
AATCCCTGGAAATTACGAACCACTGCGAGCCAGTCCGTAACGGTACACCC
CTTGGGAGCCCAAACCGTGCGATGCGGTGCATCTGGTTGTCGCACTCGAT
GAAGTAGTGCCATACTCGGGGGTTGGGCACATTGGGCGTGGGGTCTATGA
ACATGAGCTGTTCGTTGAGGGGGTGCTGGGCTAAAGTGGCACGGATCTGT
CGTGGAGTGGCCAACGGATATGTGGCTCCGCTTAGATTTATAACCCGATC
GAATGGTAGTTTGAGGTAAAAGCCGTAGGAGATAGCGTTGAGCGTGGCCT
GTACGACCGAGAAGCCACCCCAGCTCACGTTCACCCTACCCTCTTGCATG
ACATACACATTCGAAGACGTAGATGCGTACGTCAATAACGGTAGATTTGC
CGGCAGCGGACC back to topprotein sequence of rna1055 >rna1055-protein ID=rna1055-protein|Name=rna1055|organism=Nannochloropsis gaditana|type=polypeptide|length=712bp
MGPGRDEIWKGTDDEGQASCQARRGPLAYAKAPPAELYRAKDGGREELQD
KESCTGGKEQGVAERGREREAEEAREEAAISMESCLTFLLEGAEQEAFVA
ARHFLGDHGGVQGRKEGARDRNEEMGESMLGGGALAALADERMGRRTRPG
ALSSLSPVTGPLAGGGGSKIGGKGKHYQFTEEGLQDVILRLLRDEMLSDE
VLNRALDMMAHTPVAEAAVLLNTFWYEKIKEGKYVEAKAWLERALGGRSK
ASLRLVCVPINIANAHWVLVFADLVRNTVQEWDPASATGPLDPSRLKNVK
DALEKFFGFEKLKRPPLALVPAPAGLPQQPDAVNCGVFVVIYLIQICFVR
EFTLILDPNDWPGRAVQDGGQGGEGGQEGGQTRLGGGPVADPPIAESARQ
LRGQGIATKLALVPPCMLRVSENDLLRYRLFLLALILHSQTSHLSRTDPV
LLSFVSEKRRDWRMETDSLGAFPPTSTPLRSEHGVGGRGRGESDRKDMEM
QRHLLLSLARDKSNDEAMQSLFLQAAMSLLNRFSSDGRIVFVSPCWYESL
VAGNIRRSIAIMEKLSLANVEVLCLPIYHPGAGGWILARVSLLEEIKSIY
LHGTHALGEAEHIFPFVERGLQALLEGHHKLHWRQLAQPLELVPHAHQVP
VALVLLSMHILRKGPDARAPSGELTNNWGSSSMPGLRFDDQHTYFSAKVG
ILRWLLRHTSRA back to topmRNA from alignment at CM002456.1:1058186..1060432- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1055 ID=rna1055|Name=rna1055|organism=Nannochloropsis gaditana|type=mRNA|length=2247bp|location=Sequence derived from alignment at CM002456.1:1058186..1060432- (Nannochloropsis gaditana)
ATGGGGCCTGGGAGAGACGAGATATGGAAAGGAACGGATGACGAGGGGCA
GGCCTCATGCCAGGCGAGGCGGGGTCCGCTGGCGTATGCCAAGGCCCCCC
CCGCGGAGTTGTATCGCGCCAAGGACGGGGGGAGGGAGGAGCTGCAGGAC
AAGGAGTCGTGTACAGGTGGGAAGGAGCAAGGCGTTGCGGAGAGGGGAAG
AGAGAGAGAAGCGGAGGAAGCGAGGGAGGAGGCGGCCATCAGCATGGAAT
CCTGCCTGACCTTCCTCTTGGAAGGGGCGGAGCAAGAAGCCTTTGTCGCC
GCGCGCCATTTCTTGGGCGATCACGGCGGTGTTCAAGGGAGGAAGGAGGG
AGCTCGAGACCGAAACGAGGAGATGGGCGAGTCCATGCTTGGTGGTGGGG
CCTTGGCAGCCTTGGCCGACGAGCGAATGGGCCGCAGGACCCGACCAGGC
GCCTTGTCTTCGCTATCCCCGGTCACCGGCCCCCTTGCCGGCGGCGGCGG
CAGCAAAATCGGAGGGAAAGGGAAGCATTACCAATTCACAGAGGAAGGCC
TCCAGGACGTGATTCTACGGCTGCTTCGAGACGAGATGCTCTCCGACGAG
GTCTTGAACCGAGCACTGGACATGATGGCGCACACGCCGGTGGCGGAGGC
GGCCGTCCTCTTGAACACCTTTTGGTACGAGAAGATCAAGGAGGGTAAGT
ACGTGGAGGCCAAGGCCTGGCTGGAACGTGCCCTTGGCGGCCGATCCAAG
GCCTCGCTCCGGTTGGTGTGCGTTCCCATCAATATCGCCAACGCCCACTG
GGTCCTCGTGTTCGCGGACCTGGTCAGGAACACCGTGCAGGAATGGGACC
CGGCCTCTGCCACGGGACCGCTGGATCCTAGCCGCCTTAAAAACGTGAAG
GATGCCCTGGAAAAATTTTTTGGATTCGAAAAATTGAAAAGACCGCCCCT
TGCTCTTGTCCCGGCCCCGGCCGGGCTACCCCAGCAACCGGATGCCGTCA
ATTGTGGCGTCTTTGTCGTCATATACCTGATTCAAATCTGCTTTGTCCGA
GAGTTTACTTTGATCTTGGATCCCAATGACTGGCCAGGCAGGGCGGTCCA
AGATGGCGGACAGGGCGGCGAGGGGGGGCAAGAGGGAGGGCAGACGCGCT
TAGGCGGGGGGCCTGTTGCGGATCCTCCTATCGCTGAGAGCGCCCGTCAG
CTCCGGGGTCAGGGGATAGCTACAAAGCTAGCGCTAGTGCCTCCTTGTAT
GCTTCGGGTATCGGAAAATGACCTGCTCCGATACAGGCTCTTCCTCCTTG
CCCTGATTTTGCACAGCCAGACCTCCCACCTATCCAGGACAGATCCAGTG
CTGCTTTCTTTCGTGTCGGAGAAACGGCGAGACTGGAGGATGGAGACGGA
TTCTCTGGGTGCGTTTCCTCCTACGTCAACGCCGCTGCGTTCTGAACATG
GTGTAGGAGGAAGAGGGCGGGGAGAAAGCGATAGGAAAGACATGGAGATG
CAGCGACATCTGTTGCTTTCCTTGGCCAGGGACAAGTCAAACGATGAAGC
CATGCAAAGCCTTTTCCTTCAGGCTGCTATGAGCTTGCTCAATCGGTTTT
CTTCGGACGGGCGTATCGTTTTTGTGAGTCCGTGCTGGTATGAAAGCTTG
GTCGCCGGGAATATCAGAAGATCGATAGCCATCATGGAAAAGCTGTCGTT
GGCGAATGTAGAGGTGTTGTGTCTGCCTATATATCATCCAGGAGCTGGTG
GGTGGATCCTTGCACGCGTCAGCCTTTTGGAAGAGATCAAATCCATATAT
CTACATGGCACACACGCCTTGGGAGAGGCCGAGCACATTTTCCCCTTTGT
TGAAAGGGGTTTACAAGCACTTCTCGAGGGACACCACAAATTACACTGGC
GACAATTAGCTCAGCCCTTGGAATTAGTGCCACATGCTCACCAGGTACCC
GTGGCTTTGGTCCTACTGTCTATGCACATTCTGCGGAAAGGACCTGATGC
TCGAGCTCCCTCAGGCGAACTTACTAATAATTGGGGAAGTAGCAGCATGC
CCGGTTTGCGATTCGATGACCAACACACATATTTTTCAGCCAAAGTTGGC
ATTCTCCGTTGGCTTCTGCGTCACACTTCACGTGCGTGAAAATCAAATAA
TAAAAAGCTTTGTAAACTTTCGCAGAGAACACAATGTCATGTATACATAG
GAGTAAAATTCCAAAAATGAAGAAAAGCGATGATCTTGGGCTTTTTG back to topCoding sequence (CDS) from alignment at CM002456.1:1058186..1060432- >rna1055 ID=rna1055|Name=rna1055|organism=Nannochloropsis gaditana|type=CDS|length=2139bp|location=Sequence derived from alignment at CM002456.1:1058186..1060432- (Nannochloropsis gaditana)
ATGGGGCCTGGGAGAGACGAGATATGGAAAGGAACGGATGACGAGGGGCA
GGCCTCATGCCAGGCGAGGCGGGGTCCGCTGGCGTATGCCAAGGCCCCCC
CCGCGGAGTTGTATCGCGCCAAGGACGGGGGGAGGGAGGAGCTGCAGGAC
AAGGAGTCGTGTACAGGTGGGAAGGAGCAAGGCGTTGCGGAGAGGGGAAG
AGAGAGAGAAGCGGAGGAAGCGAGGGAGGAGGCGGCCATCAGCATGGAAT
CCTGCCTGACCTTCCTCTTGGAAGGGGCGGAGCAAGAAGCCTTTGTCGCC
GCGCGCCATTTCTTGGGCGATCACGGCGGTGTTCAAGGGAGGAAGGAGGG
AGCTCGAGACCGAAACGAGGAGATGGGCGAGTCCATGCTTGGTGGTGGGG
CCTTGGCAGCCTTGGCCGACGAGCGAATGGGCCGCAGGACCCGACCAGGC
GCCTTGTCTTCGCTATCCCCGGTCACCGGCCCCCTTGCCGGCGGCGGCGG
CAGCAAAATCGGAGGGAAAGGGAAGCATTACCAATTCACAGAGGAAGGCC
TCCAGGACGTGATTCTACGGCTGCTTCGAGACGAGATGCTCTCCGACGAG
GTCTTGAACCGAGCACTGGACATGATGGCGCACACGCCGGTGGCGGAGGC
GGCCGTCCTCTTGAACACCTTTTGGTACGAGAAGATCAAGGAGGGTAAGT
ACGTGGAGGCCAAGGCCTGGCTGGAACGTGCCCTTGGCGGCCGATCCAAG
GCCTCGCTCCGGTTGGTGTGCGTTCCCATCAATATCGCCAACGCCCACTG
GGTCCTCGTGTTCGCGGACCTGGTCAGGAACACCGTGCAGGAATGGGACC
CGGCCTCTGCCACGGGACCGCTGGATCCTAGCCGCCTTAAAAACGTGAAG
GATGCCCTGGAAAAATTTTTTGGATTCGAAAAATTGAAAAGACCGCCCCT
TGCTCTTGTCCCGGCCCCGGCCGGGCTACCCCAGCAACCGGATGCCGTCA
ATTGTGGCGTCTTTGTCGTCATATACCTGATTCAAATCTGCTTTGTCCGA
GAGTTTACTTTGATCTTGGATCCCAATGACTGGCCAGGCAGGGCGGTCCA
AGATGGCGGACAGGGCGGCGAGGGGGGGCAAGAGGGAGGGCAGACGCGCT
TAGGCGGGGGGCCTGTTGCGGATCCTCCTATCGCTGAGAGCGCCCGTCAG
CTCCGGGGTCAGGGGATAGCTACAAAGCTAGCGCTAGTGCCTCCTTGTAT
GCTTCGGGTATCGGAAAATGACCTGCTCCGATACAGGCTCTTCCTCCTTG
CCCTGATTTTGCACAGCCAGACCTCCCACCTATCCAGGACAGATCCAGTG
CTGCTTTCTTTCGTGTCGGAGAAACGGCGAGACTGGAGGATGGAGACGGA
TTCTCTGGGTGCGTTTCCTCCTACGTCAACGCCGCTGCGTTCTGAACATG
GTGTAGGAGGAAGAGGGCGGGGAGAAAGCGATAGGAAAGACATGGAGATG
CAGCGACATCTGTTGCTTTCCTTGGCCAGGGACAAGTCAAACGATGAAGC
CATGCAAAGCCTTTTCCTTCAGGCTGCTATGAGCTTGCTCAATCGGTTTT
CTTCGGACGGGCGTATCGTTTTTGTGAGTCCGTGCTGGTATGAAAGCTTG
GTCGCCGGGAATATCAGAAGATCGATAGCCATCATGGAAAAGCTGTCGTT
GGCGAATGTAGAGGTGTTGTGTCTGCCTATATATCATCCAGGAGCTGGTG
GGTGGATCCTTGCACGCGTCAGCCTTTTGGAAGAGATCAAATCCATATAT
CTACATGGCACACACGCCTTGGGAGAGGCCGAGCACATTTTCCCCTTTGT
TGAAAGGGGTTTACAAGCACTTCTCGAGGGACACCACAAATTACACTGGC
GACAATTAGCTCAGCCCTTGGAATTAGTGCCACATGCTCACCAGGTACCC
GTGGCTTTGGTCCTACTGTCTATGCACATTCTGCGGAAAGGACCTGATGC
TCGAGCTCCCTCAGGCGAACTTACTAATAATTGGGGAAGTAGCAGCATGC
CCGGTTTGCGATTCGATGACCAACACACATATTTTTCAGCCAAAGTTGGC
ATTCTCCGTTGGCTTCTGCGTCACACTTCACGTGCGTGA back to top
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