rna1053, rna1053 (mRNA) Nannochloropsis gaditana

Overview
Namerna1053
Unique Namerna1053
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length598
Alignment locationCM002456.1:1051793..1053908 +

Link to JBrowse

Properties
Property NameValue
Productxylosyltransferase 1
Orig transcript idgnl|cribi|Naga_100050g3.6877.mrna
Orig protein idgnl|cribi|Naga_100050g3.6877
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1051793..1053908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100050g3gene1014Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1053rna1053-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29654.1cds1052Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1053 ID=rna1053|Name=rna1053|organism=Nannochloropsis gaditana|type=mRNA|length=598bp
ATGGCACTTTTGGAGAAAACTGGTATACCATGCAACTCGGGGGATGGAAT
GCCACATTGTATGTTTCAAGGTGGCGGGTACATGATTAAGCATTGGACGC
CCGCTCTTTTCTCGTCCCTTTCCTGGCAAATTTTAATTCACTCCAAAAAA
AGAAAATGCTCACTTAAAAAATACGCTCGGCGACGCCTAACTGTCAGCAC
AAGTGTCTGGTGCAGCGTGAAGTCAAGGGGATCTGTTTCAGAGAGTGTGA
ACACGGGGATATTCATCCTTCCAGCGTTCGAATCGTGGTTGGGCGTCTTC
CCGGAAGGAGAGATGTCTTCCATGTTAAAGCGACGGGCACCGCGTCAGGC
TGGCAACAGAACAGCGTTACCGCTCCGTTTGGACGGGTGGCAGGACCGTG
AAACTCTCCACTCTCACTCCCAGGGGAGTGACCTTTGATTTTTGCCGCAA
GAAATAAAAATTCCCAAAAAAAAAAATAAACGGATTGGGAGAGACAACAT
GCACTGCGGGAGAATAGGGAAAGGAAAAGGACTACATACACTCTCCTGTA
AGCCCGATATTTTGCCCCCGCAAAGAGAAATACCACCATGCTAGAACT
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protein sequence of rna1053

>rna1053-protein ID=rna1053-protein|Name=rna1053|organism=Nannochloropsis gaditana|type=polypeptide|length=529bp
MHWYWWYPFLVFACPLSRGANSQQQQQHQQQQSIKAHLHKDATTRLHNHA
RDRLAAMLSRTHSVECAEEVTLAYEAFLTAHITETLLPFESTFVKNQCPR
PDGNNTGVASNDTNGPSIVHKLKEADDLHILYIITAHRDLDQVVRLIQAL
QDDAEDTRACLLTKSGASASSCERNHFVVHIDGKEGPLPANLPLLTYAST
SSNVYVMQEGRVNVSWGGFSVVQATLNAISYGFYLKLPFDRVINLSGATY
PLATPRQIRATLAQHPLNEQLMFIDPTPNVPNPRVWHYFIECDNQMHRIA
RFGLPRGVPLRTGSQWFVISRDFAHYLLTDDNFVGPYTAYAQHILIPDEN
FFATVLKSSPYCHHHCNTNYLHLTFDVWEDEKGAAADPSKCLQPDPRICG
RSPLLVRTEEIDHLIPRPGADMPAEPKRETFLFARKFDSNVSVEVLDEID
RRLAWQRARERESLLAEIAAASVAFPLGENCGDKGCIANGCTRQDDVEGN
IPPEGHVDKEMLLPSVLREHGIALESIQW
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mRNA from alignment at CM002456.1:1051793..1053908+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1053 ID=rna1053|Name=rna1053|organism=Nannochloropsis gaditana|type=mRNA|length=2116bp|location=Sequence derived from alignment at CM002456.1:1051793..1053908+ (Nannochloropsis gaditana)
TCAAAACAGGTCATGCATTGGTATTGGTGGTACCCTTTTTTGGTTTTCGC
ATGCCCTCTAAGTAGAGGCGCCAactcgcagcagcagcagcagcaccagc
agcagcaaagcATCAAGGCCCATCTGCATAAAGATGCTACAACACGCCTT
CATAACCATGCAAGAGACCGGCTGGCCGCAATGCTATCCAGAACTCATTC
TGTCGAATGCGCTGAAGAGGTTACCTTAGCCTATGAAGCTTTTTTGACGG
CACATATCACCGAGACGCTTTTGCCTTTCGAGTCAACGTTTGTAAAGAAT
CAGTGCCCTAGGCCCGACGGAAACAATACAGGGGTAGCAAGCAACGACAC
TAATGGGCCTTCTATTGTTCACAAATTAAAAGAAGCGGACGACCTTCACA
TCCTGTACATTATCACGGCGCATCGCGATTTGGATCAGGTTGTGCGTCTC
ATCCAGGCACTGCAGGATGATGCGGAAGACACTCGTGCGTGTCTACTTAC
AAAATCAGGGGCAAGCGCATCCTCTTGTGAGCGAAATCATTTTGTCGTGC
ACATCGACGGCAAAGAGGGTCCGCTGCCGGCAAATCTACCGTTATTGACG
TACGCATCTACGTCTTCGAATGTGTATGTCATGCAAGAGGGTAGGGTGAA
CGTGAGCTGGGGTGGCTTCTCGGTCGTACAGGCCACGCTCAACGCTATCT
CCTACGGCTTTTACCTCAAACTACCATTCGATCGGGTTATAAATCTAAGC
GGAGCCACATATCCGTTGGCCACTCCACGACAGATCCGTGCCACTTTAGC
CCAGCACCCCCTCAACGAACAGCTCATGTTCATAGACCCCACGCCCAATG
TGCCCAACCCCCGAGTATGGCACTACTTCATCGAGTGCGACAACCAGATG
CACCGCATCGCACGGTTTGGGCTCCCAAGGGGTGTACCGTTACGGACTGG
CTCGCAGTGGTTCGTAATTTCCAGGGATTTTGCTCACTACCTGCTCACAG
ACGACAACTTCGTTGGACCCTACACAGCCTACGCCCAGCACATACTCATC
CCTGACGAGAATTTCTTCGCCACTGTTCTCAAGTCATCTCCTTACTGTCA
TCATCATTGCAACACAAATTACCTCCATCTAACGTTTGACGTGTgggaag
acgagaaaggAGCGGCCGCAGACCCTAGCAAATGTCTCCAACCCGACCCT
CGTATCTGCGGCCGGTCTCCTTTATTGGTGCGAACGGAGGAGATCGATCA
TCTGATCCCGCGGCCAGGCGCTGATATGCCCGCAGAACCAAAGCGAGAAA
CATTTCTTTTCGCGCGTAAATTCGATTCTAATGTGAGTGTCGAGGTACTG
GACGAAATTGACCGGCGACTGGCCTGGCAACGAGCGCGTGAACGGGAGTC
TTTGCTTGCGGAAATTGCCGCCGCAAGTGTAGCATTTCCTCTGGGAGAAA
ATTGTGGGGACAAAGGCTGTATTGCCAATGGCTGTACAAGGCAAGACGAT
GTCGAGGGCAATATTCCTCCCGAGGGTCATGTAGATAAAGAAATGCTGCT
GCCGAGTGTCTTACGAGAGCACGGCATTGCGCTCGAATCAATACAATGGT
GATCATGCGACAACAGTAATATGTAACTTACGAAGCAGCAACGGATGTCA
TTGAAGACAAATCAGTTTCTTTCGCGCTTATTTCGAAGTCGCGTCAACTT
TTGAGAGCCTTTTTCCGATCATGTAAATTATACCCAGTATCGGAATTTTC
CCGAATAAGAGGCCCGGGTTATAAATATTAGGACATTATCACTTCAAATA
TGTAACGTTTTGAACAGCATCGGCACCAATGTCAGTCCTTCTCCGCCGAA
TCGCACCTATCTGTGCCGAGACCCGCCAGGTTGTCTTCTCGTGCTTCACT
ATCTTCTTGATAGTGACGCTCCTCCACTGTCGTCATGCGGTCGTTCGTGT
GACCGCTGTTGTTCCCTTTGAGTATTTATCCCTCAACGCCGACATCACCG
CTTCTAGTGGGTGAATGGCCTTCAGAACCTGCAGTGGAGCGATTCAACAC
TGAGTTTGTTGGGAAGGGACTAAGAGGAACGCGCAGGTCCTCCAATGCTT
CCGAGATTTTCATTCG
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Coding sequence (CDS) from alignment at CM002456.1:1051793..1053908+

>rna1053 ID=rna1053|Name=rna1053|organism=Nannochloropsis gaditana|type=CDS|length=1590bp|location=Sequence derived from alignment at CM002456.1:1051793..1053908+ (Nannochloropsis gaditana)
ATGCATTGGTATTGGTGGTACCCTTTTTTGGTTTTCGCATGCCCTCTAAG
TAGAGGCGCCAactcgcagcagcagcagcagcaccagcagcagcaaagcA
TCAAGGCCCATCTGCATAAAGATGCTACAACACGCCTTCATAACCATGCA
AGAGACCGGCTGGCCGCAATGCTATCCAGAACTCATTCTGTCGAATGCGC
TGAAGAGGTTACCTTAGCCTATGAAGCTTTTTTGACGGCACATATCACCG
AGACGCTTTTGCCTTTCGAGTCAACGTTTGTAAAGAATCAGTGCCCTAGG
CCCGACGGAAACAATACAGGGGTAGCAAGCAACGACACTAATGGGCCTTC
TATTGTTCACAAATTAAAAGAAGCGGACGACCTTCACATCCTGTACATTA
TCACGGCGCATCGCGATTTGGATCAGGTTGTGCGTCTCATCCAGGCACTG
CAGGATGATGCGGAAGACACTCGTGCGTGTCTACTTACAAAATCAGGGGC
AAGCGCATCCTCTTGTGAGCGAAATCATTTTGTCGTGCACATCGACGGCA
AAGAGGGTCCGCTGCCGGCAAATCTACCGTTATTGACGTACGCATCTACG
TCTTCGAATGTGTATGTCATGCAAGAGGGTAGGGTGAACGTGAGCTGGGG
TGGCTTCTCGGTCGTACAGGCCACGCTCAACGCTATCTCCTACGGCTTTT
ACCTCAAACTACCATTCGATCGGGTTATAAATCTAAGCGGAGCCACATAT
CCGTTGGCCACTCCACGACAGATCCGTGCCACTTTAGCCCAGCACCCCCT
CAACGAACAGCTCATGTTCATAGACCCCACGCCCAATGTGCCCAACCCCC
GAGTATGGCACTACTTCATCGAGTGCGACAACCAGATGCACCGCATCGCA
CGGTTTGGGCTCCCAAGGGGTGTACCGTTACGGACTGGCTCGCAGTGGTT
CGTAATTTCCAGGGATTTTGCTCACTACCTGCTCACAGACGACAACTTCG
TTGGACCCTACACAGCCTACGCCCAGCACATACTCATCCCTGACGAGAAT
TTCTTCGCCACTGTTCTCAAGTCATCTCCTTACTGTCATCATCATTGCAA
CACAAATTACCTCCATCTAACGTTTGACGTGTgggaagacgagaaaggAG
CGGCCGCAGACCCTAGCAAATGTCTCCAACCCGACCCTCGTATCTGCGGC
CGGTCTCCTTTATTGGTGCGAACGGAGGAGATCGATCATCTGATCCCGCG
GCCAGGCGCTGATATGCCCGCAGAACCAAAGCGAGAAACATTTCTTTTCG
CGCGTAAATTCGATTCTAATGTGAGTGTCGAGGTACTGGACGAAATTGAC
CGGCGACTGGCCTGGCAACGAGCGCGTGAACGGGAGTCTTTGCTTGCGGA
AATTGCCGCCGCAAGTGTAGCATTTCCTCTGGGAGAAAATTGTGGGGACA
AAGGCTGTATTGCCAATGGCTGTACAAGGCAAGACGATGTCGAGGGCAAT
ATTCCTCCCGAGGGTCATGTAGATAAAGAAATGCTGCTGCCGAGTGTCTT
ACGAGAGCACGGCATTGCGCTCGAATCAATACAATGGTGA
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Synonyms
Publications