rna1050, rna1050 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1050
Unique Name	rna1050
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1509
Alignment location	CM002456.1:1046857..1049599 +

Link to JBrowse

Properties


Property Name	Value
Product	prolyl-trna synthetase
Orig transcript id	gnl\|cribi\|Naga_100050g6.6878.mrna
Orig protein id	gnl\|cribi\|Naga_100050g6.6878
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1046857..1049599 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g6	gene1011	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1050	rna1050-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29655.1	cds1049	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1046857..1049599+
coding sequence from alignment at CM002456.1:1046857..1049599+

mRNA sequence

>rna1050 ID=rna1050|Name=rna1050|organism=Nannochloropsis gaditana|type=mRNA|length=1509bp
ATGCTCGCGTCTCGTACACTGCTACGGGCAGCACTGCGGGGTGTACGACC
CACGCCCGGCGTCGTGACGCACGCAAGTCGCACCTTCGCAGCGGCTGCAT
CCTCGTACGATTTGGTTGTCGTGGGAGGGGGGCCCGGGGGCTACGTCGCG
GCCATCAAAGGCGCGCAACTGGGAATGAAGACAGCTTGCGTGGAAGTCCG
TGGTGCACTGGGCGGGACTTGCCTGAATGTGGGGTGCATCCCGTCCAAGG
CGTTGTTGCACTCGTCGCATCTCTTCGAGCAGGCAAACCATGACTTCAAG
AAACACGGGATTAAAATCAATGGCACCGTGGAAGTAGACTTGAAGACCAT
GATGGGAGGAAAGGATAAGGCAGTGCGGCAGCTTACGGGTGGTATCGAGT
ATTTGTTCAAGAAGAACGGTGTGGACTATGTGAAGGGCTTCGGAAAAGTG
GCGGGCCCACACAACGTGCACGTAAAGCTGAACGCAGGCGGGGAAAGCGA
CCTGGAAACCAAGAATATCCTCATCGCCACGGGTTCCGAGGTGACCCCTC
TGCCTACCTGTCCCGTGGACAACGAGAAAGGCCGCATCGTCGACTCGACC
GGCGCCCTGGTGTTGAAAACCGTCCCCAAGACGATGGCCGTGATCGGAGG
GGGTGTCATCGGCTTGGAAATGGGTTCGGTCTGGCGTCGTCTCGGCAGCA
AGGTTACGGTCATCGAGTTCCTGGATCGAATTTGCCCCTCCTTGGACCAG
GAGGTCGGGCAGGCTTTCCAGAAAATTCTGGCGAAGCAAGGCATTCAATT
CAAACTTGGCACGAAAGTGGTGGGCTCCACCGTCAAGGAGGATGGCGTCA
GCCTCAGCCTGGAGCCGGCGGCAGGAGGCGCGGCCGAGAATTTCGACGCG
GAGGTAGTGCTGGTGGCCATTGGTCGCCGGCCCTTCACCCGCAACATTGG
CTTGGAGGAGCAGGGCATCGCCTTGGACAAGGCGGGCCGAGTCACCGTAG
ACGCGCACTTCCGAACCTCGGTACCTTCCATCCACGCGATCGGAGACGCG
ATCGTGGGGCCCATGCTGGCCCACAAGGCGGAGGAGGAGGGAATCGCGGC
GGTGGAGATGATGCAAGGCTTGGCTGGCCATGTGAACTACGACGCTGTTC
CCGGCGTGATATACACTCATCCTGAAGTCGCCGCCGCAGGAAAGACGGAG
GAGGAATTGAAGGCCATGGGCGTGGAATACAACAAAGGCACCTTCCCTTT
CTCCGCCAACTCGCGCGCAAGAGCGGTGGGCGAGGCGGACGGATTGGTGA
AGATTTTGTCCGATAAAACGACGGACAGAATTTTAGGAATCCACATTATT
GGCTCGAATGCCGGGGAGATGATTGCCGAGGGTGTGCTGGGCATGGAGTA
CGGTGCCTCCAGCGAGGACATTGCCCGCACCTGTCACGCGCACCCGACGT
TGTCGGAGGCGTTTAAGGAGGCATGTATGGCAACGTCCTCAAAGGCAATT
CACTTCTAA

protein sequence of rna1050

>rna1050-protein ID=rna1050-protein|Name=rna1050|organism=Nannochloropsis gaditana|type=polypeptide|length=741bp
MTYIAGQEIMTDAAVASLSLDDKELAKEIEASVEVGENASLGKLKELGVS
FKLYSHPETATIDKQAEHLGHLPGVLTKNLLLRDKKIGTFLITVLHDRPT
DTKTIAKLLKLGGKANLRFADEETLEGLLKVKRGAVSALAVLNDTGNAVT
LAMDKALMEQPIVNLHPLRNDRTVAIPTAALLQFVHAAGHEPTMLDFDSV
PVAPPPGPVPPKEKNRSDSKNGGDKSTAVAKASASTPGQTLLGIDVSKKD
NFALWYTRVITYSEMIDYYDISGCYILRPWAYSIWESIQRWLDAEIKELG
VENSYFPLFVPKSVLEREKDHIEGFAPEVAWVTKSGDSDLAEPIAIRPTS
ETIMYPLFKKWIRSHRDLPLCLNQWSNVVRWEFKDPTPFLRSREFLWQEG
HTAHATFEESQKMVMDILDLYKKVYEELLAVPVIQGRKTEMERFPGGDIT
TTVEAYIHGSGRSVQGATSHNLGQNFGKMFEIQYEDKAGGHAVPWQTSWG
LTTRSIGVMIMAHGDDKGLVLPPRVAPKQVVVIPIVKASLSAENKAALQS
YAERITTDLKAAKIRVHLDHRDNYTPGWKYNHWEQKGVPLRLEVGPMDLD
KGTARMVRRDSGLKVDLAGEAVVHTVLHVLEEIQANLFAKCKAERDKKLV
KVWEWKDFVPALEEKCVILTPFVNETEWEEEVKRRSREEALAGESEDART
ATSAAAKTLCIPFDQPDLSPGTKCFVSGKEATCWVLWGRSY

mRNA from alignment at CM002456.1:1046857..1049599+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1050 ID=rna1050|Name=rna1050|organism=Nannochloropsis gaditana|type=mRNA|length=2743bp|location=Sequence derived from alignment at CM002456.1:1046857..1049599+ (Nannochloropsis gaditana)
CTGTCCAACCCCCTCAAAAAGGACGGAGCTAATCTAATGCTTTGTTTCAA
ATTCCTCTGACACGACATGCTGCACCGTTGGGTGCCTGCGCGGATGAGAA
ATGTTGGATTGTAGGAGTATCATACCAGGCGAGGAGACGACCTGCCCCGC
ATGATCGATGTGTGGACGGCAAATGGTTGAGCATCCCTATCAGACCGTAC
tcactctcttttcctttcacaAACTTTCCTCGCTCATGATGTTGCGATGA
CTTACATTGCAGGGCAGGAAATAATGACCGACGCGGCCGTGGCCAGTCTC
AGTCTGGACGATAAGGAGCTCGCTAAGGAAATAGAAGCAAGCGTCGAGGT
GGGCGAGAATGCCTCCTTGGGCAAGCTGAAGGAGTTGGGCGTGTCCTTCA
AGCTCTACAGCCACCCAGAGACGGCGACCATCGACAAGCAGGCAGAGCAT
CTCGGACACTTGCCCGGTGTCTTGACGAAAAATTTGCTCCTTCGAGACAA
GAAGATTGGAACTTTCCTCATCACGGTCTTGCACGATCGCCCTACAGACA
CCAAAACCATTGCCAAGCTCCTCAAGCTGGGGGGCAAGGCCAACCTACGC
ttcgcggacgaggagacccTTGAGGGTCTGCTGAAGGTGAAACGAGGCGC
CGTGAGCGCCTTGGCGGTGCTGAACGACACCGGGAACGCAGTGACCCTGG
CTATGGATAAGGCTCTCATGGAACAACCGATTGTCAATCTGCATCCGCTT
CGCAACGATCGTACAGTTGCTATTCCCACAGCTGCCTTGCTCCAATTCGT
CCATGCCGCCGGTCACGAGCCCACGATGCTGGACTTTGACTCGGTGCCAG
TTGCCCCACCGCCCGGACCCGTCCCgcccaaggagaagaatcGCAGCGAC
TCCAAAAATGGTGGTGACAAAAGCACAGCAGTGGCCAAGGCATCAGCTTC
TACACCTGGACAGACCTTGCTGGGCATCGACGTGAGCAAGAAAGACAATT
TTGCCTTATGGTACACGCGGGTGATCACGTATAGCGAAATGATTGACTAC
TACGATATCTCCGGCTGTTACATCCTCCGGCCCTGGGCCTACAGCATTTG
GGAGTCCATCCAGCGCTGGCTCGACGCCGAGATCAAAGAACTGGGCGTTG
AAAATTCGTACTTTCCCTTGTTCGTCCCCAAGTCCGTCCTGGAGCGCGAG
AAGGACCACATCGAAGGCTTCGCGCCCGAAGTGGCCTGGGTGACGAAATC
CGGAGACTCGGACCTTGCCGAGCCCATTGCCATACGCCCGACCAGTGAAA
CGATCATGTATCCGCTTTTTAAGAAATGGATCCGCTCCCACCGGGACCTG
CCCTTGTGTCTGAACCAGTGGAGCAACGTGGTTCGGTGGGAGTTCAAGGA
CCCGACGCCCTTCCTGAGAAGCCGAGAGTTCCtgtggcaggaggggcacA
CTGCCCATGCCACGTTCGAGGAGTCTCAAAAGATGGTCATGGATATTCTC
GACCTGTACAAGAAGGTCTACGAGGAGCTCTTGGCCGTGCCCGTCATCCA
GGGCCGAAAAACGGAGATGGAGCGCTTCCCGGGCGGGGACATTACAACGA
CCGTGGAGGCCTACATCCATGGCTCGGGCCGCTCCGTCCAAGGGGCGACG
TCGCACAACCTTGGCCAGAATTTCGGGAAAATGTTCGAGATCCAAtacga
ggacaaggcgggggggcacgcgGTGCCCTGGCAGACGTCTTGGGGGCTGA
CGACCCGCAGCATCGGCGTGATGATCATGGCGCACGGGGACGACAagggc
ctcgtcctccctccccgcgtcGCGCCCAAGCAGGTGGTGGTCATCCCCAT
CGTCAAAGCCAGCTTGTCTGCCGAGAACAAGGCGGCATTGCAAAGCTATG
CGGAGCGAATCACCACGGACCTGAAGGCGGCCAAGATCCGTGTGCACCTG
GACCATAGGGACAACTACACGCCTGGATGGAAATACAACCACTGGGAGCA
GAAGGGCGTGCCTCTCCGGCTGGAGGTGGGGCCCATGGACCTGGACAAGG
GGACGGCGAGGATGGTACGCCGAGACTCGGGTCTAAAGGTGGACTTAGCG
GGCGAAGCCGTGGTGCACACCGTCCTGCATGTATTAGAGGAGATACAGGC
CAATTTATTCGCCAAGTGCAAGGCGGAGCGGGACAAGAAACTGGTCAAAG
TGTGGGAGTGGAAAGATTTTGTGCCTGCCTTGGAGGAAAAGTGTGTGATT
TTGACGCCCTTCGTCAACGAGAcggaatgggaggaggaggtaaagcggag
aagccgggaggaggccttggcgggtGAAAGTGAGGACGCTCGGACCGCCA
CGTCGGCCGCGGCCAAGACACTATGCATCCCGTTTGATCAACCAGACCTT
TCCCCTGGGACGAAGTGCTTCGTGAGTGGAAAGGAGGCCACCTGTTGGGT
TTTATGGGGACGAAGCTATTAAGTTCGGAGGATTTACTtgcttgagggag
gaggttgcctcGTAAAACAAGGATACATGAGTGCGTAGCAACAAAAAAAG
TGTGATACCACTTATTGattggaggagctggtaaCGTTTTTTTCCCTCTA
AAACATATAACTGGTGTAGAGCGGCACGAGAAGCGCCGGAGAGACCACAT
CTCTGTCCTTAAACAATCCTAGAATTAAACGAAAGCAATAATTTGAAGTC
CCAAAGAACCCCACACAAAGCATAGAATGTGAAAAGCAACTTG

Coding sequence (CDS) from alignment at CM002456.1:1046857..1049599+

>rna1050 ID=rna1050|Name=rna1050|organism=Nannochloropsis gaditana|type=CDS|length=2226bp|location=Sequence derived from alignment at CM002456.1:1046857..1049599+ (Nannochloropsis gaditana)
ATGACTTACATTGCAGGGCAGGAAATAATGACCGACGCGGCCGTGGCCAG
TCTCAGTCTGGACGATAAGGAGCTCGCTAAGGAAATAGAAGCAAGCGTCG
AGGTGGGCGAGAATGCCTCCTTGGGCAAGCTGAAGGAGTTGGGCGTGTCC
TTCAAGCTCTACAGCCACCCAGAGACGGCGACCATCGACAAGCAGGCAGA
GCATCTCGGACACTTGCCCGGTGTCTTGACGAAAAATTTGCTCCTTCGAG
ACAAGAAGATTGGAACTTTCCTCATCACGGTCTTGCACGATCGCCCTACA
GACACCAAAACCATTGCCAAGCTCCTCAAGCTGGGGGGCAAGGCCAACCT
ACGCttcgcggacgaggagacccTTGAGGGTCTGCTGAAGGTGAAACGAG
GCGCCGTGAGCGCCTTGGCGGTGCTGAACGACACCGGGAACGCAGTGACC
CTGGCTATGGATAAGGCTCTCATGGAACAACCGATTGTCAATCTGCATCC
GCTTCGCAACGATCGTACAGTTGCTATTCCCACAGCTGCCTTGCTCCAAT
TCGTCCATGCCGCCGGTCACGAGCCCACGATGCTGGACTTTGACTCGGTG
CCAGTTGCCCCACCGCCCGGACCCGTCCCgcccaaggagaagaatcGCAG
CGACTCCAAAAATGGTGGTGACAAAAGCACAGCAGTGGCCAAGGCATCAG
CTTCTACACCTGGACAGACCTTGCTGGGCATCGACGTGAGCAAGAAAGAC
AATTTTGCCTTATGGTACACGCGGGTGATCACGTATAGCGAAATGATTGA
CTACTACGATATCTCCGGCTGTTACATCCTCCGGCCCTGGGCCTACAGCA
TTTGGGAGTCCATCCAGCGCTGGCTCGACGCCGAGATCAAAGAACTGGGC
GTTGAAAATTCGTACTTTCCCTTGTTCGTCCCCAAGTCCGTCCTGGAGCG
CGAGAAGGACCACATCGAAGGCTTCGCGCCCGAAGTGGCCTGGGTGACGA
AATCCGGAGACTCGGACCTTGCCGAGCCCATTGCCATACGCCCGACCAGT
GAAACGATCATGTATCCGCTTTTTAAGAAATGGATCCGCTCCCACCGGGA
CCTGCCCTTGTGTCTGAACCAGTGGAGCAACGTGGTTCGGTGGGAGTTCA
AGGACCCGACGCCCTTCCTGAGAAGCCGAGAGTTCCtgtggcaggagggg
cacACTGCCCATGCCACGTTCGAGGAGTCTCAAAAGATGGTCATGGATAT
TCTCGACCTGTACAAGAAGGTCTACGAGGAGCTCTTGGCCGTGCCCGTCA
TCCAGGGCCGAAAAACGGAGATGGAGCGCTTCCCGGGCGGGGACATTACA
ACGACCGTGGAGGCCTACATCCATGGCTCGGGCCGCTCCGTCCAAGGGGC
GACGTCGCACAACCTTGGCCAGAATTTCGGGAAAATGTTCGAGATCCAAt
acgaggacaaggcgggggggcacgcgGTGCCCTGGCAGACGTCTTGGGGG
CTGACGACCCGCAGCATCGGCGTGATGATCATGGCGCACGGGGACGACAa
gggcctcgtcctccctccccgcgtcGCGCCCAAGCAGGTGGTGGTCATCC
CCATCGTCAAAGCCAGCTTGTCTGCCGAGAACAAGGCGGCATTGCAAAGC
TATGCGGAGCGAATCACCACGGACCTGAAGGCGGCCAAGATCCGTGTGCA
CCTGGACCATAGGGACAACTACACGCCTGGATGGAAATACAACCACTGGG
AGCAGAAGGGCGTGCCTCTCCGGCTGGAGGTGGGGCCCATGGACCTGGAC
AAGGGGACGGCGAGGATGGTACGCCGAGACTCGGGTCTAAAGGTGGACTT
AGCGGGCGAAGCCGTGGTGCACACCGTCCTGCATGTATTAGAGGAGATAC
AGGCCAATTTATTCGCCAAGTGCAAGGCGGAGCGGGACAAGAAACTGGTC
AAAGTGTGGGAGTGGAAAGATTTTGTGCCTGCCTTGGAGGAAAAGTGTGT
GATTTTGACGCCCTTCGTCAACGAGAcggaatgggaggaggaggtaaagc
ggagaagccgggaggaggccttggcgggtGAAAGTGAGGACGCTCGGACC
GCCACGTCGGCCGCGGCCAAGACACTATGCATCCCGTTTGATCAACCAGA
CCTTTCCCCTGGGACGAAGTGCTTCGTGAGTGGAAAGGAGGCCACCTGTT
GGGTTTTATGGGGACGAAGCTATTAA

Synonyms

Publications