rna1049, rna1049 (mRNA) Nannochloropsis gaditana

Overview
Namerna1049
Unique Namerna1049
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1962
Alignment locationCM002456.1:1044790..1046298 -

Link to JBrowse

Properties
Property NameValue
Productdihydrolipoyl dehydrogenase
Orig transcript idgnl|cribi|Naga_100050g7.6847.mrna
Orig protein idgnl|cribi|Naga_100050g7.6847
GeneGCSL
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1044790..1046298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
GCSLgene1010Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29624.1cds1048Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1049rna1049-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1049 ID=rna1049|Name=rna1049|organism=Nannochloropsis gaditana|type=mRNA|length=1962bp
ATGTCTGGCACAACCGCTAGCAGCAACAGCCTTGCGGGAACAGGAGGCCT
GGGGCCCTGGATGCTAAATGTGCGGCTGGACCGGCCCGTGGAAGGTTGCC
TGATAAGTCCCCATGCATACTTGTACCAGAAGGGAGAGAAGGGGCAACAG
CGAGACAAGGAGCGGTTTAACTACCGCTATCGATGGCTGCGAGGACCCGA
GCGTCCAGTGTGTGCCAACACTGCTTGTCCTAGAGCGCAGTCTTTCAATC
CCATTCAATGGAGTAAGTTCGCCCGGAAAGGCTGCTCCTTCCTGATTCAA
TGCGTCGTGTGCGCCAAATTGAGGTTACCTCGCCATCATAGTGTCTTTTG
CACGCTGCAATGCTTTCAAGACGCATGGAAGAACCACAAACGCATTCATC
AGATGGGCAGAACGCGGAGCGCGAACAGCGGCGCGGATGGCGTGCCCGAC
GCGTCCACGGACCCGCTGCAGGACGGAGAGGAGGAGACCCCGCCCCCCCC
TCCTCTCGACTACCTCACTGCAGACACGAGCGAGGACGACTGGCAGGAGG
TGGGGTCGGAAAGAACCTACTGTCCACAACTCTCTGACATCGGGAGGTGT
CTGAAGCTGGAAATCCGGGTCCTGAACCCCGATGGCTCCTTGTTCTTCGG
GCCCCGCCTGACCGAGACAGAGCCCGTCTTGTCCGCCCCCCCGCCCCCAC
CCCAACGGCCCTTGATGCAGGTGAAGAACTTGGCAGCTGCCGCTGCAGGG
CTGAAGTTTCGGATCGCAACGTACAATATTTTGGCGGAGATCTACGCCAC
GCAAACTATGTACCCATACTGCGACCATTGGACTTTGAATTGGAACTACC
GCAAGGTGAATCTTTTGAGGGAGATGCGCGAGGTGGCAGCGGACGTGTTG
TTCCTGCAGGAGGTGCAAGCGGACCACTACGAGCAAGACATTCTACCGGA
GCTCTCGGAGGAGGGCTATGACGGTCTCTACAAGCATAAGACCCGGGAGA
GCATGGGGGCGTCGGGCAAAGTGGACGGTTGTGCCATTCTCTGGCGGCGC
GGAAAGTTCCGCTTGGCCGAAAAGTACCTGATGGAATTCAACGACTGCGC
CCGCAGGCAGGCCTCGGAGCTGGGGCTGAGCCACGACCAGAAGCACACCT
TCCTGACCAGAGTGCTCAAGGACAACGTTGCCCAGGCGGTGGTGCTGGAG
GTGCTGGGACGGCCCCGCGGGGGTCGACACGGCGGAAGCATGGTCTGCAT
GGCGAACACACACCTGTACTCGCACCCAGAGTTCCCAGACGTGAAGCTCT
GGCAGTGTCACCAACTCCTCCAGTGGCTGGAGGGCCTGACCCTCCCAAGC
AACATGCCCCTCGTCCTCTGCGGGGACTTCAACTCGGAGCCCTCGTCCGC
CGTCTACGAGCTGGTCTCGGCGCAGGTGGTGGGGGCGGACCATCCGGATA
TGCAGCTCCTCCAACAGCAAGCCTCCGCCAGCAGCACCGAGGCGACAGAA
CTGGTGCGCTCAGTCCTTCTTTCCGAGCAGCACCACCAAGTGGCCCATTC
GCTGCTTCTCAAATCCGCCTACGCGACTCTGCTGGGTGAGGAGCCACGGT
TCACGAACTACACCGTCGGCTACGTGGGTGTGCTTGACTATATCTGGTTC
AGCGGCATGCACTGGCGGCCTCTGACGGTCGCCCCTATCCCCGCCGAGCA
GGACTTGGCTTGCACAGGAGAGGCGCTTCCCAACGCCCTCTATCCCTCCG
ACCACCTCATGTTGTTTTCTGACCTGCAATTTGTCGTGGGCGGGGGCGGG
GGCGGGGGTGGCGGCGGAGGACTGGGTGGGGGATTGATGGGAGAGCTTCG
AAAGGCGATGCCCGGCCTAGGGGGGGGGCTCGGAGGCTACATGACACCCA
CCAAGCAGCAGCAACAGCAGCTGACGTCATCGCCCTCTTTAACCCGGAAG
GGAGTTCGATAG
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protein sequence of rna1049

>rna1049-protein ID=rna1049-protein|Name=rna1049|organism=Nannochloropsis gaditana|type=polypeptide|length=502bp
MLASRTLLRAALRGVRPTPGVVTHASRTFAAAASSYDLVVVGGGPGGYVA
AIKGAQLGMKTACVEVRGALGGTCLNVGCIPSKALLHSSHLFEQANHDFK
KHGIKINGTVEVDLKTMMGGKDKAVRQLTGGIEYLFKKNGVDYVKGFGKV
AGPHNVHVKLNAGGESDLETKNILIATGSEVTPLPTCPVDNEKGRIVDST
GALVLKTVPKTMAVIGGGVIGLEMGSVWRRLGSKVTVIEFLDRICPSLDQ
EVGQAFQKILAKQGIQFKLGTKVVGSTVKEDGVSLSLEPAAGGAAENFDA
EVVLVAIGRRPFTRNIGLEEQGIALDKAGRVTVDAHFRTSVPSIHAIGDA
IVGPMLAHKAEEEGIAAVEMMQGLAGHVNYDAVPGVIYTHPEVAAAGKTE
EELKAMGVEYNKGTFPFSANSRARAVGEADGLVKILSDKTTDRILGIHII
GSNAGEMIAEGVLGMEYGASSEDIARTCHAHPTLSEAFKEACMATSSKAI
HF
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mRNA from alignment at CM002456.1:1044790..1046298-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1049 ID=rna1049|Name=rna1049|organism=Nannochloropsis gaditana|type=mRNA|length=1509bp|location=Sequence derived from alignment at CM002456.1:1044790..1046298- (Nannochloropsis gaditana)
ATGCTCGCGTCTCGTACACTGCTACGGGCAGCACTGCGGGGTGTACGACC
CACGCCCGGCGTCGTGACGCACGCAAGTCGCACCTTCGCAGCGGCTGCAT
CCTCGTACGATTTGGTTGTCGTGGGAGGGGGGCCCGGGGGCTACGTCGCG
GCCATCAAAGGCGCGCAACTGGGAATGAAGACAGCTTGCGTGGAAGTCCG
TGGTGCACTGGGCGGGACTTGCCTGAATGTGGGGTGCATCCCGTCCAAGG
CGTTGTTGCACTCGTCGCATCTCTTCGAGCAGGCAAACCATGACTTCAAG
AAACACGGGATTAAAATCAATGGCACCGTGGAAGTAGACTTGAAGACCAT
GATGGGAGGAAAGGATAAGGCAGTGCGGCAGCTTACGGGTGGTATCGAGT
ATTTGTTCAAGAAGAACGGTGTGGACTATGTGAAGGGCTTCGGAAAAGTG
GCGGGCCCACACAACGTGCACGTAAAGCTGAACGCAGGCGGGGAAAGCGA
CCTGGAAACCAAGAATATCCTCATCGCCACGGGTTCCGAGGTGACCCCTC
TGCCTACCTGTCCCGTGGACAACGAGAAAGGCCGCATCGTCGACTCGACC
GGCGCCCTGGTGTTGAAAACCGTCCCCAAGACGATGGCCGTGATCGGAGG
GGGTGTCATCGGCTTGGAAATGGGTTCGGTCTGGCGTCGTCTCGGCAGCA
AGGTTACGGTCATCGAGTTCCTGGATCGAATTTGCCCCTCCTTGGACCAG
GAGGTCGGGCAGGCTTTCCAGAAAATTCTGGCGAAGCAAGGCATTCAATT
CAAACTTGGCACGAAAGTGGTGGGCTCCACCGTCAAGGAGGATGGCGTCA
GCCTCAGCCTGGAGCCGGCGGCAGGAGGCGCGGCCGAGAATTTCGACGCG
GAGGTAGTGCTGGTGGCCATTGGTCGCCGGCCCTTCACCCGCAACATTGG
CTTGGAGGAGCAGGGCATCGCCTTGGACAAGGCGGGCCGAGTCACCGTAG
ACGCGCACTTCCGAACCTCGGTACCTTCCATCCACGCGATCGGAGACGCG
ATCGTGGGGCCCATGCTGGCCCACAAGGCGGAGGAGGAGGGAATCGCGGC
GGTGGAGATGATGCAAGGCTTGGCTGGCCATGTGAACTACGACGCTGTTC
CCGGCGTGATATACACTCATCCTGAAGTCGCCGCCGCAGGAAAGACGGAG
GAGGAATTGAAGGCCATGGGCGTGGAATACAACAAAGGCACCTTCCCTTT
CTCCGCCAACTCGCGCGCAAGAGCGGTGGGCGAGGCGGACGGATTGGTGA
AGATTTTGTCCGATAAAACGACGGACAGAATTTTAGGAATCCACATTATT
GGCTCGAATGCCGGGGAGATGATTGCCGAGGGTGTGCTGGGCATGGAGTA
CGGTGCCTCCAGCGAGGACATTGCCCGCACCTGTCACGCGCACCCGACGT
TGTCGGAGGCGTTTAAGGAGGCATGTATGGCAACGTCCTCAAAGGCAATT
CACTTCTAA
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Coding sequence (CDS) from alignment at CM002456.1:1044790..1046298-

>rna1049 ID=rna1049|Name=rna1049|organism=Nannochloropsis gaditana|type=CDS|length=1509bp|location=Sequence derived from alignment at CM002456.1:1044790..1046298- (Nannochloropsis gaditana)
ATGCTCGCGTCTCGTACACTGCTACGGGCAGCACTGCGGGGTGTACGACC
CACGCCCGGCGTCGTGACGCACGCAAGTCGCACCTTCGCAGCGGCTGCAT
CCTCGTACGATTTGGTTGTCGTGGGAGGGGGGCCCGGGGGCTACGTCGCG
GCCATCAAAGGCGCGCAACTGGGAATGAAGACAGCTTGCGTGGAAGTCCG
TGGTGCACTGGGCGGGACTTGCCTGAATGTGGGGTGCATCCCGTCCAAGG
CGTTGTTGCACTCGTCGCATCTCTTCGAGCAGGCAAACCATGACTTCAAG
AAACACGGGATTAAAATCAATGGCACCGTGGAAGTAGACTTGAAGACCAT
GATGGGAGGAAAGGATAAGGCAGTGCGGCAGCTTACGGGTGGTATCGAGT
ATTTGTTCAAGAAGAACGGTGTGGACTATGTGAAGGGCTTCGGAAAAGTG
GCGGGCCCACACAACGTGCACGTAAAGCTGAACGCAGGCGGGGAAAGCGA
CCTGGAAACCAAGAATATCCTCATCGCCACGGGTTCCGAGGTGACCCCTC
TGCCTACCTGTCCCGTGGACAACGAGAAAGGCCGCATCGTCGACTCGACC
GGCGCCCTGGTGTTGAAAACCGTCCCCAAGACGATGGCCGTGATCGGAGG
GGGTGTCATCGGCTTGGAAATGGGTTCGGTCTGGCGTCGTCTCGGCAGCA
AGGTTACGGTCATCGAGTTCCTGGATCGAATTTGCCCCTCCTTGGACCAG
GAGGTCGGGCAGGCTTTCCAGAAAATTCTGGCGAAGCAAGGCATTCAATT
CAAACTTGGCACGAAAGTGGTGGGCTCCACCGTCAAGGAGGATGGCGTCA
GCCTCAGCCTGGAGCCGGCGGCAGGAGGCGCGGCCGAGAATTTCGACGCG
GAGGTAGTGCTGGTGGCCATTGGTCGCCGGCCCTTCACCCGCAACATTGG
CTTGGAGGAGCAGGGCATCGCCTTGGACAAGGCGGGCCGAGTCACCGTAG
ACGCGCACTTCCGAACCTCGGTACCTTCCATCCACGCGATCGGAGACGCG
ATCGTGGGGCCCATGCTGGCCCACAAGGCGGAGGAGGAGGGAATCGCGGC
GGTGGAGATGATGCAAGGCTTGGCTGGCCATGTGAACTACGACGCTGTTC
CCGGCGTGATATACACTCATCCTGAAGTCGCCGCCGCAGGAAAGACGGAG
GAGGAATTGAAGGCCATGGGCGTGGAATACAACAAAGGCACCTTCCCTTT
CTCCGCCAACTCGCGCGCAAGAGCGGTGGGCGAGGCGGACGGATTGGTGA
AGATTTTGTCCGATAAAACGACGGACAGAATTTTAGGAATCCACATTATT
GGCTCGAATGCCGGGGAGATGATTGCCGAGGGTGTGCTGGGCATGGAGTA
CGGTGCCTCCAGCGAGGACATTGCCCGCACCTGTCACGCGCACCCGACGT
TGTCGGAGGCGTTTAAGGAGGCATGTATGGCAACGTCCTCAAAGGCAATT
CACTTCTAA
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Synonyms
Publications