rna1043, rna1043 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1043
Unique Name	rna1043
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1528
Alignment location	CM002456.1:1032810..1035517 +

Link to JBrowse

Properties


Property Name	Value
Product	protease do-like 9
Orig transcript id	gnl\|cribi\|Naga_100050g15.6876.mrna
Orig protein id	gnl\|cribi\|Naga_100050g15.6876
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1032810..1035517 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g15	gene1005	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1043	rna1043-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29653.1	cds1042	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1032810..1035517+
coding sequence from alignment at CM002456.1:1032810..1035517+

mRNA sequence

>rna1043 ID=rna1043|Name=rna1043|organism=Nannochloropsis gaditana|type=mRNA|length=1528bp
CCTGCCGCCAAAAAGAGGCGACACAAATCGCTCCAAGGGGCATCCCACGG
GCCCAAATAAGCCCTGGATTCCTCGCATTCCCAAACAAATGCGATCTACG
CGCTGATAGCTATGCTAAATGCTCCGACAGTGTCCATGTTGCTGACCTAT
TCACCCTTTGCAAGCACATCGTAGGCCGGACGCCGTTATCGTCCTCCTTG
TCAGCGTCTCACGCCCCCCATCACGAACCCTCCTTCGCGACGATAGGGCT
TTCCATCTTCATGCCGCGCGTTCTCCTTGCCTTTCTGGCACTTTTAGGCT
CGTCCACGTCCTATGCCTTCGCCCCCCCCCCCCATCCTCGATCTTTAAAG
GGTCATCTCAGACACTCCTCCCGTCAAAACCTCGTGGCGAGGCACCTCCT
ACAAGACCCCGTCACGACCGCCGCTGACTTCCTACAAAACGAAGCCGGAA
TTCCTCCTCCCTCAGATCTATCAGCTCTCATTCAGTTGCTCCTTTACCGT
GGAGAGGAGTCCGTTTTCCCGTCAGAGAACACCGAACTGCACCCTTTAGT
GATTCCACTGACTAAGTCAGGGGATGAATACACATGCCTCCTCCGATGGC
CGACTCCACAGGAGGGCGCGCCCGTGCCTGTGGTGAAAGCACGCCCGGGA
TTAAGCGGCCTGAAACTGGTGGCGCTGAGCACGCTTGACCTCGCTCACCG
GCTAGCCGCGGAGGAAGACCACGGCCAAGGGCGGGAGGCGGAGTGGGCCG
CCAGCCTGGTGAATGCCTACCTCCCCGCCGAGAAGCAGTACGTGCGTGGG
GCCGTCGAGAAAGTTGGCTACGGGCTGGAACGGTACCTGTTCCTCAAAGT
GGGAAGTTTCCCGGACGTATACAAGTTTTTGACCGAATTCCACATGAGCA
AGGGCGACCAAGCCAGCGCGCTTGTCACGGCGGAGAAAGCCTACAACACG
TTCAACGGCTGGGGACAACCCTACATGGAATACTGCAGGCTGCTCCAAGG
CATGAAAGGGCGGGAGTTGGAGATGAGAGACGCAGCCTTCGCGGCGTTGC
GGACACCGCTGTGGACGGTTGCTGACGACGACGGCGATTTGGAAATGGTT
TTGAATGCGGCAAAATCCAGCCGTGAGAAGGCCGCAGATAAATTCTGGAA
GCTCTACGAAGACGAACGGCTACAGGAGGTAAAGCAGGGGAAGTTGCCGG
AGCAGGTGGCACTGGACAGAGCAGCGTACCTGATGGACGCGGCCCTGGTA
GGTGGGAACGGGATTCGGTCTTGGTCCGACGTGCGACCGCCGCTGGCGGA
GTTGTACAGAGAAGCGGGCATGAGGGAGCTGGCTGATTTCGTAGAGAGAT
GAGTGGAGGGGTAGTTTGGGCAGTGGCCTTCATGGAAAGAATCAAAAATG
TGCAAGAATTCAGTGGAGAGTAAAAAGCGGTACCGAACCCGTCGACAAGG
ATAGGAGTATGTCTCTTATTCGTTTCACGTGAAAAAGATCAACGACCATT
TGGTCACATGCTTTCAGAAACGCATTTT

protein sequence of rna1043

>rna1043-protein ID=rna1043-protein|Name=rna1043|organism=Nannochloropsis gaditana|type=polypeptide|length=532bp
MLEEGGEQALLARLLETMGRESLSEQTLDSVLRVYCTHVQPSFAAPWQRL
QQISSTSSGFVIEGRRIITNAHSVEYGSIIQIRKRGCDIKWVAELLAYGP
ECDLAVLTVRDEAFWEDLYPLAFGELPALLDDVSVVGYPVGGESLSVTAG
VVSRIELQEYAQGGETLLAIQIDAAINSGNSGGPVINDQDKLVGVAFQSL
SSHDTENIGYVIPVDILLHFLADIERHGKYTGFCRLGVKFQPMESPALRR
HKALSPGASGVLITRVDPLAPAHGLLRKGDVLMGVDGISLANDGTIPFRK
GERVELHYYFSQLFQGDTVQLRIWREGITQDIAVPAYIYKLAVRPHLNNE
MPSYFMVGGMVFTVLSHPFLLSNLGETYAPETDADVRLLSLIQSPLQEPE
QQLVVLSEVLEHSVNLGYELFHRQHLTLFNGEEIRNLAHLVSLVDACREG
EMVFEFDRGEILVLDAGAAHKATQEVASTHGIPASRSTNLVAPEGGTLAP
PTSTVAAEDAKMKVKKSIAPPIEAARTSTASQ

mRNA from alignment at CM002456.1:1032810..1035517+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1043 ID=rna1043|Name=rna1043|organism=Nannochloropsis gaditana|type=mRNA|length=2708bp|location=Sequence derived from alignment at CM002456.1:1032810..1035517+ (Nannochloropsis gaditana)
TAAACTCACCtttcaccccccccctcccgcgatCCCCACAGCATCAGCCA
TCATGAGATATTTTTCAAGCGTGTTGTTATTACTCTCGGGTTCAAGCCtc
agcttctcctttctACCGCCGCTTCCCTCATCCCGCTTGGACTCCGCCCA
TCCTGCTTCAAGACATCGCCCCTGTAGCCCCGGCCTCTCTGCTCCACTTT
CAGCCAAAACCTCACGCACCGACCAGAATGGCATGTCGTATGTGAGGAGA
CCGCACATATATAGGCCAGGGAAGTCTCCCGAATTGAGGTGAGGGCTTTG
TACGGTCGCAAGGACACtcgaaagaagagggaggaagggtttcAAGTCTG
GCCGTGAACGTGTCCTCTCCATGGCTCACGCTTTCGCAACCTCTAGGTCC
CTTTCAAACAATAATGAACGCCTTGGCCTTATGTCTTTTTTCGTTTGTAT
CTTCGTGATCTGGTCACATGGGCCTTtgccgctctccctctcttgcccCC
TTCAACGCCTTCGTCATTCGTCACACGGTAGTTTCCTCATGTTTCAACCG
ATACATTGATCACTCCGTTACGTCGATTTTTCTTTGAACACGGCTCCCCT
AGCACCAGCTCCAGCAACAAGGCTGCCCTCGCAGCCGAGACTCGGGAGGG
CCCGGACGGtatgctggaggagggaggggagcaggccTTGCTCGCGAGGC
TGTTGGAAACAATGGGCCGGGAGTCGCTCTCTGAGCAAACGCTGGACTCC
GTCTTGCGCGTATATTGCACCCACGTGcagccctcctttgccgccCCCTG
GCAGCGGCTCCAGCAaatctcttccacctcctccggcttCGTCATAGAAG
GTCGCCGCATCATCACCAACGCCCACAGTGTGGAGTACGGCTCAATCATC
CAAATACGCAAACGCGGGTGCGATATCAAGTGGGTGGCAGAACTGCTTGC
CTACGGTCCTGAGTGCGACCTGGCCGTGCTGACCGTCAGGGATGAGGCCT
TCTGGGAGGACCTGTACCCACTGGCCTTCGGAGAGCTCCCAGCCCTGCTC
GACGACGTGAGCGTGGTGGGCTACCCGGTGGGCGGTGAATCTCTGTCCGT
AACCGCGGGCGTGGTCTCCCGCATCGAGCTTCAAGAGTACGCCCAGGGGG
GAGAGACGCTCTTGGCCATCCAGATCGACGCCGCCATCAACAGCGGGAAC
AGCGGAGGCCCTGTGATCAACGACCAGGACAAGGTGCGTGCCCGACTCCT
TCGGACCCGGGGGAGCTCGGTTTTTCCTGTGTTGGGAGCCTGGTGAAAGG
GGCCCTCGGTCTGTGCGACGGCTCATGGCCGGGTGGCAGactcatccccc
cccccttatcTCGCTCTCATGCCCCTGCACTGGATGAGTCCACGATGCGC
TTGAGCACACCGGCATCTTGTAAGAAATACCTCattcgcccctcttccct
gcccccccacgcctccctgTCGTGTCCCCAAGCTCGTGGGGGTGGCCTTC
CAGTCCCTGTCCTCTCACGACACGGAAAACATCGGCTACGTCATCCCCGt
cgacatcctcctccatttcctcgcgGACATCGAGCGACACGGGAAATACA
CGGGCTTCTGCCGCCTGGGGGTCAAGTTCCAGCCGATGGagtcgcccgcc
ctccgccgtcacAAGGCTCTCTCACCCGGCGCTTCTGGCGTCCTCATTAC
CAGAGTCGACCCGCTCGCGCCCGCGCACGGCCTCCTGCGCAAGGGCGACG
TCCTCATGGGCGTGGACGGCATCTCCCTCGCCAACGACGGGACCATCCCT
TTCAGAAAGGGGGAGCGCGTGGAGCTCCACTACTACTTCTCCCAGTTGTT
TCAAGGGGACACGGTCCAACTCCGGATTTGGCGCGAAGGGATCACGCAGG
ACATCGCGGTCCCCGCCTACATTTACAAACTCGCCGTTCGCCCGCATTTG
AACAACGAGATGCCGTCCTACTTCATGGTGGGGGGCATGGTCTTCACGGT
CCTCtcgcaccccttcctcctctccaaccTGGGCGAGACGTACGCGCCCG
AAACGGACGCAGAcgtccgccttctctccctcattcaGTCCCCTCTTCAG
GAACCCGAACAGCAGCTTGTGGTTCTGTCGGAGGTTCTAGAGCACTCTGT
GAACCTGGGCTACGAGCTTTTTCATCGCCAGCATCTGACGCTTTTCAACG
GCGAAGAAATCAGAAATTTGGCCCATCTGGTCTCCCTTGTCGATGCCtgc
cgggaaggagagatggTTTTCGAATTTGACCGGGGCGAGATCCTTGTCCT
GGACGCTGGCGCTGCTCACAAGGCCACTCAAGAGGTGGCATCCACACACG
GTATTCCGGCATCGCGGTCTACGAACTTAGTGGcaccggagggaggaacg
ctCGCACCACCTACCTCAACGGTGGCAGCCGAGGACGCAAAGATGAAAGT
CAAAAAATCCATCGCCCCTCCGATAGAGGCGGCCAGGACCTCAACAGCAT
CCCAGTGAGCCCTGTATTTCGAAGATAGTGTTAGAGAGTGTGCGGTCCCG
CCGGGTAGTGATGTCAGTCGGCGGTAAATTTTGCATCAATAATGGCAACA
GTTGGTAATGGTGTGACAAGCCAAAGTACCCATGGCGAGGGCGGAAAGAG
TGGTAACAATAGTCTCCGTACAAGTAAGCTTTAAGACCAAACGTGACGCC
GGTTCAGA

Coding sequence (CDS) from alignment at CM002456.1:1032810..1035517+

>rna1043 ID=rna1043|Name=rna1043|organism=Nannochloropsis gaditana|type=CDS|length=3198bp|location=Sequence derived from alignment at CM002456.1:1032810..1035517+ (Nannochloropsis gaditana)
atgctggaggagggaggggagcaggccTTGCTCGCGAGGCTGTTGGAAAC
AATGGGCCGGGAGTCGCTCTCTGAGCAAACGCTGGACTCCGTCTTGCGCG
TATATTGCACCCACGTGcagccctcctttgccgccCCCTGGCAGCGGCTC
CAGCAaatctcttccacctcctccggcttCGTCATAGAAGGTCGCCGCAT
CATCACCAACGCCCACAGTGTGGAGTACGGCTCAATCATCCAAATACGCA
AACGCGGGTGCGATATCAAGTGGGTGGCAGAACTGCTTGCCTACGGTCCT
GAGTGCGACCTGGCCGTGCTGACCGTCAGGGATGAGGCCTTCTGGGAGGA
CCTGTACCCACTGGCCTTCGGAGAGCTCCCAGCCCTGCTCGACGACGTGA
GCGTGGTGGGCTACCCGGTGGGCGGTGAATCTCTGTCCGTAACCGCGGGC
GTGGTCTCCCGCATCGAGCTTCAAGAGTACGCCCAGGGGGGAGAGACGCT
CTTGGCCATCCAGATCGACGCCGCCATCAACAGCGGGAACAGCGGAGGCC
CTGTGATCAACGACCAGGACAAGCTCGTGGGGGTGGCCTTCCAGTCCCTG
TCCTCTCACGACACGGAAAACATCGGCTACGTCATCCCCGtcgacatcct
cctccatttcctcgcgGACATCGAGCGACACGGGAAATACACGGGCTTCT
GCCGCCTGGGGGTCAAGTTCCAGCCGATGGagtcgcccgccctccgccgt
cacAAGGCTCTCTCACCCGGCGCTTCTGGCGTCCTCATTACCAGAGTCGA
CCCGCTCGCGCCCGCGCACGGCCTCCTGCGCAAGGGCGACGTCCTCATGG
GCGTGGACGGCATCTCCCTCGCCAACGACGGGACCATCCCTTTCAGAAAG
GGGGAGCGCGTGGAGCTCCACTACTACTTCTCCCAGTTGTTTCAAGGGGA
CACGGTCCAACTCCGGATTTGGCGCGAAGGGATCACGCAGGACATCGCGG
TCCCCGCCTACATTTACAAACTCGCCGTTCGCCCGCATTTGAACAACGAG
ATGCCGTCCTACTTCATGGTGGGGGGCATGGTCTTCACGGTCCTCtcgca
ccccttcctcctctccaaccTGGGCGAGACGTACGCGCCCGAAACGGACG
CAGAcgtccgccttctctccctcattcaGTCCCCTCTTCAGGAACCCGAA
CAGCAGCTTGTGGTTCTGTCGGAGGTTCTAGAGCACTCTGTGAACCTGGG
CTACGAGCTTTTTCATCGCCAGCATCTGACGCTTTTCAACGGCGAAGAAA
TCAGAAATTTGGCCCATCTGGTCTCCCTTGTCGATGCCtgccgggaagga
gagatggTTTTCGAATTTGACCGGGGCGAGATCCTTGTCCTGGACGCTGG
CGCTGCTCACAAGGCCACTCAAGAGGTGGCATCCACACACGGTATTCCGG
CATCGCGGTCTACGAACTTAGTGGcaccggagggaggaacgctCGCACCA
CCTACCTCAACGGTGGCAGCCGAGGACGCAAAGATGAAAGTCAAAAAATC
CATCGCCCCTCCGATAGAGGCGGCCAGGACCTCAACAGCATCCCAGTGAa
tgctggaggagggaggggagcaggccTTGCTCGCGAGGCTGTTGGAAACA
ATGGGCCGGGAGTCGCTCTCTGAGCAAACGCTGGACTCCGTCTTGCGCGT
ATATTGCACCCACGTGcagccctcctttgccgccCCCTGGCAGCGGCTCC
AGCAaatctcttccacctcctccggcttCGTCATAGAAGGTCGCCGCATC
ATCACCAACGCCCACAGTGTGGAGTACGGCTCAATCATCCAAATACGCAA
ACGCGGGTGCGATATCAAGTGGGTGGCAGAACTGCTTGCCTACGGTCCTG
AGTGCGACCTGGCCGTGCTGACCGTCAGGGATGAGGCCTTCTGGGAGGAC
CTGTACCCACTGGCCTTCGGAGAGCTCCCAGCCCTGCTCGACGACGTGAG
CGTGGTGGGCTACCCGGTGGGCGGTGAATCTCTGTCCGTAACCGCGGGCG
TGGTCTCCCGCATCGAGCTTCAAGAGTACGCCCAGGGGGGAGAGACGCTC
TTGGCCATCCAGATCGACGCCGCCATCAACAGCGGGAACAGCGGAGGCCC
TGTGATCAACGACCAGGACAAGCTCGTGGGGGTGGCCTTCCAGTCCCTGT
CCTCTCACGACACGGAAAACATCGGCTACGTCATCCCCGtcgacatcctc
ctccatttcctcgcgGACATCGAGCGACACGGGAAATACACGGGCTTCTG
CCGCCTGGGGGTCAAGTTCCAGCCGATGGagtcgcccgccctccgccgtc
acAAGGCTCTCTCACCCGGCGCTTCTGGCGTCCTCATTACCAGAGTCGAC
CCGCTCGCGCCCGCGCACGGCCTCCTGCGCAAGGGCGACGTCCTCATGGG
CGTGGACGGCATCTCCCTCGCCAACGACGGGACCATCCCTTTCAGAAAGG
GGGAGCGCGTGGAGCTCCACTACTACTTCTCCCAGTTGTTTCAAGGGGAC
ACGGTCCAACTCCGGATTTGGCGCGAAGGGATCACGCAGGACATCGCGGT
CCCCGCCTACATTTACAAACTCGCCGTTCGCCCGCATTTGAACAACGAGA
TGCCGTCCTACTTCATGGTGGGGGGCATGGTCTTCACGGTCCTCtcgcac
cccttcctcctctccaaccTGGGCGAGACGTACGCGCCCGAAACGGACGC
AGAcgtccgccttctctccctcattcaGTCCCCTCTTCAGGAACCCGAAC
AGCAGCTTGTGGTTCTGTCGGAGGTTCTAGAGCACTCTGTGAACCTGGGC
TACGAGCTTTTTCATCGCCAGCATCTGACGCTTTTCAACGGCGAAGAAAT
CAGAAATTTGGCCCATCTGGTCTCCCTTGTCGATGCCtgccgggaaggag
agatggTTTTCGAATTTGACCGGGGCGAGATCCTTGTCCTGGACGCTGGC
GCTGCTCACAAGGCCACTCAAGAGGTGGCATCCACACACGGTATTCCGGC
ATCGCGGTCTACGAACTTAGTGGcaccggagggaggaacgctCGCACCAC
CTACCTCAACGGTGGCAGCCGAGGACGCAAAGATGAAAGTCAAAAAATCC
ATCGCCCCTCCGATAGAGGCGGCCAGGACCTCAACAGCATCCCAGTGA

Synonyms

Publications