rna10404, rna10404 (mRNA) Nannochloropsis gaditana

Overview
Namerna10404
Unique Namerna10404
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1051
Alignment locationKK037279.1:17876..19037 +

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Properties
Property NameValue
ProductUncharacterized protein family Cys-rich
Orig transcript idgnl|cribi|Naga_101531g2.3202.mrna
Orig protein idgnl|cribi|Naga_101531g2.3202
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037279.1supercontigKK037279.1:17876..19037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101531g2gene10108Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10404rna10404-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20303.1cds10371Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10404 ID=rna10404|Name=rna10404|organism=Nannochloropsis gaditana|type=mRNA|length=1051bp
TAGAGGGAGAACTTGAAGCAACCTCGCTAACCACCAAGAGCGAGTTAAGT
CCTCTCAGGTCAAAGTGGAGGCATTAAACGCAGTACTCCGCCACACTGAG
CACTTCTAGGGCGCAGAAAGGCACACTTTGAGGTGGTTGAGGCGTTATTG
AGTGGTTTCTGCTCGGAGAGATTGTTCATGTGGTGTCGTGTGGGACGTCT
TCGTGTGCATGACGTTCGGCTGAGTTAGATAAGCAACCCCACTGGCATTT
CTCAGACGCTTTAAAAGAGGGAAAGATAGACTCGCTCTTATAATTCGAAA
TAAAATGCAAGACATGCTAAGGTCGCTTCCTTGTACGCATGGTGCCAAAT
TTTATGGTGGGCTACTAGTCGGCTTTCATACATACAGGACATCTTGTGTC
CCTGTTACTGCCCTATGTCTATGTTGGAGGAAATTGAGAGAGAAATCGTT
TAAATGGATGGATGCCACAGCGAACCACCTAAGACTGCTAGAGTAATGCC
GTCCGTTGCGTCGTTGCCAACGTTTTGGGTCATACAGAGACTTTCTTATT
TCCTCCTCCTTCCCACTTTCCCCTTTGTGTTCCCCCCCTCCCTCCTCCCC
TCACCACCTCCAGACACCTCCCTCTGTGTGCATGACCGTCTGCTTTTTGC
GGCGGCCAATTTGTACAGCATTCCCCTCCCTCACCCGTCGTCTTCCGCAC
GGGCCGCCAGTCTACTCGCGCGCTAGCCTCCCAACCTCCTTCCTTGCATT
TCCGACTCTCACCACGCGCGTTTCCGCCCTCACTTTTTCCACATTTTCTT
CCTCTTCCTCGACACCACCGTCCATCCCCAATACCCGCTTGCGACGGGCG
CGCCGCCCGCACGTCCCTCAGCGCCAAGAAATGCGGGGTCCGTCATTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTCTCTC
GCCTCTTTCCCTCATTCCTTTTCCCCTTCCTTTTGCGCTTTCCCTTCTTC
CTCTCTTTTTCCTTCTCTTTGGCAGTAGGCTCTCCTCGCCCCTCCTCCCA
T
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protein sequence of rna10404

>rna10404-protein ID=rna10404-protein|Name=rna10404|organism=Nannochloropsis gaditana|type=polypeptide|length=139bp
MYESTGQEKTAPMMGTAPVPQTMEGGMEAGRVSDGTQTGSLPSEYRPMEG
QWKDHCFACFSQMNPTCLTACFVPCLALAMLSKRMGYAPYKGILYGLLAA
FVLGWLLGILVFYSLAVFVITFQLLLLVRAKFNLPVPPS
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mRNA from alignment at KK037279.1:17876..19037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10404 ID=rna10404|Name=rna10404|organism=Nannochloropsis gaditana|type=mRNA|length=1162bp|location=Sequence derived from alignment at KK037279.1:17876..19037+ (Nannochloropsis gaditana)
CGTGGCATGTATTGTAGGCGTCGAGCGCCTTGGTTTCTCTCTGCCTCTGC
AGTGTTGCACGTCGTCGCGACTTGAAAGGGGAGAAACAAATACGCGCGTT
CGGCAAAGTTGGGTGATCATGCCCTCGTGTCTTCGAAACGTGATTGTCAC
GTACATTGACGCGTTCACACACGGGTCCGTGTGGCTCGCAAAGGGGCCAG
AACAGAAAATGGCGTAGGAGGGACCGGTCTGTCTAGGCATCAAAAGCAGT
GATCGCTATGCCTTATCCATTGAATGCACTCGGCCACGCAAGCCCACTAA
AATCTTGCCTGTAGACATGACGTTGTCCCCATACCCTATATTcatgcttt
cttttccaagAAAAAGGGCGTGGCGTGCAACAGGAAGGTGTAGATGGCCT
CGACAGGCGATTTGAGAGCTGTGGAGGGAgccttccatttccatccctca
ccgcccttccgtcctctctcctcccacgcacAAAGAAAGGTCGCTCATGT
ACGAATCCACGGGCCAAGAAAAGACGGCGCCCATGATGGGAACCGCCCCG
GTGCCGCaaacgatggagggagggatggaagcggGCCGCGTGAGTGACGG
CACGCAAACAGGCAGTCTGCCCAGCGAGTATCGACCTATGGAGGGTCAAT
GGAAAGACCATTGCTTCGCCTGCTTCAGCCAGATGAACCCCACGTGTGCG
TAAtgaatggagggggaggaaaggagggagggaggagagagggagggtca
aaAAAGGGTCATTGGCTGTCGTCTGCGTCCAGTGAGGTTTGTCATGTCAT
ATTCTCATGATAGATTTTGATTATTCTCTCCCACGAAATACACAGGCCTG
ACTGCTTGCTTTGttccctgcctcgccctcgccatgCTCTCCAAACGCAT
GGGGtacgccgccctccctccctccctccctccctccctccctccctccc
tccgtatCCACcaccccacccctccctcctcccttccctccgctccctca
gTTACGCGCCATACAAGGGTATCCTCTACGGTCTGTTGGCGGCCTTTGTC
CTGGGTTGGCTTTTGGGCATCTTGGTATTTTATTCCCTCGCAGTCTTCGT
CATCACTTTTcaacttctcctcctcgtccgcgccAAGTTCAACCTGccgg
tgcctccctccc
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Coding sequence (CDS) from alignment at KK037279.1:17876..19037+

>rna10404 ID=rna10404|Name=rna10404|organism=Nannochloropsis gaditana|type=CDS|length=1254bp|location=Sequence derived from alignment at KK037279.1:17876..19037+ (Nannochloropsis gaditana)
ATGTACGAATCCACGGGCCAAGAAAAGACGGCGCCCATGATGGGAACCGC
CCCGGTGCCGCaaacgatggagggagggatggaagcggGCCGCGTGAGTG
ACGGCACGCAAACAGGCAGTCTGCCCAGCGAGTATCGACCTATGGAGGGT
CAATGGAAAGACCATTGCTTCGCCTGCTTCAGCCAGATGAACCCCACGTG
CCTGACTGCTTGCTTTGttccctgcctcgccctcgccatgCTCTCCAAAC
GCATGGGTTACGCGCCATACAAGGGTATCCTCTACGGTCTGTTGGCGGCC
TTTGTCCTGGGTTGGCTTTTGGGCATCTTGGTATTTTATTCCCTCGCAGT
CTTCGTCATCACTTTTcaacttctcctcctcgtccgcgccAAGTTCAACC
TGccggtgcctccctcccATGTACGAATCCACGGGCCAAGAAAAGACGGC
GCCCATGATGGGAACCGCCCCGGTGCCGCaaacgatggagggagggatgg
aagcggGCCGCGTGAGTGACGGCACGCAAACAGGCAGTCTGCCCAGCGAG
TATCGACCTATGGAGGGTCAATGGAAAGACCATTGCTTCGCCTGCTTCAG
CCAGATGAACCCCACGTGCCTGACTGCTTGCTTTGttccctgcctcgccc
tcgccatgCTCTCCAAACGCATGGGTTACGCGCCATACAAGGGTATCCTC
TACGGTCTGTTGGCGGCCTTTGTCCTGGGTTGGCTTTTGGGCATCTTGGT
ATTTTATTCCCTCGCAGTCTTCGTCATCACTTTTcaacttctcctcctcg
tccgcgccAAGTTCAACCTGccggtgcctccctcccATGTACGAATCCAC
GGGCCAAGAAAAGACGGCGCCCATGATGGGAACCGCCCCGGTGCCGCaaa
cgatggagggagggatggaagcggGCCGCGTGAGTGACGGCACGCAAACA
GGCAGTCTGCCCAGCGAGTATCGACCTATGGAGGGTCAATGGAAAGACCA
TTGCTTCGCCTGCTTCAGCCAGATGAACCCCACGTGCCTGACTGCTTGCT
TTGttccctgcctcgccctcgccatgCTCTCCAAACGCATGGGTTACGCG
CCATACAAGGGTATCCTCTACGGTCTGTTGGCGGCCTTTGTCCTGGGTTG
GCTTTTGGGCATCTTGGTATTTTATTCCCTCGCAGTCTTCGTCATCACTT
TTcaacttctcctcctcgtccgcgccAAGTTCAACCTGccggtgcctccc
tccc
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Synonyms
Publications