rna104, rna104 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna104
Unique Name	rna104
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2258
Alignment location	CM002455.1:283765..285585 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100033g28.8405.mrna
Orig protein id	gnl\|cribi\|Naga_100033g28.8405
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:283765..285585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100033g28	gene101	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna104	rna104-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30566.1	cds104	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:283765..285585+
coding sequence from alignment at CM002455.1:283765..285585+

mRNA sequence

>rna104 ID=rna104|Name=rna104|organism=Nannochloropsis gaditana|type=mRNA|length=2258bp
CATCTGGCCGGTTTCCTAACTACTCGACACTTGTCACAGGACGGGAACCC
CACCACTTCACGCTTTGACGCAGGTTGTGAAGTACCCTGGAGCCTGCCCT
CCGAGATAGCCTCCTCCCTGCCCCCTCTGTAGCTGCCCGAGGCCCTACGT
TTTGAGAGTGAGACCGAGCAAACTGACGAAGCCTTTGACAGTCATCATCA
GTGTGCTGATAATAGGTTTCTGTGCGCTTCTCGTCCGGCTGAAGATTTCA
TTGTTGCATAAGCCGCACACGTCCGCTCTTAGCAGCCAAAACTTAGATTG
GGGGCCCGGGGCTTAATGACAGCCCGGCATCTGACGAGGCATAACCGTCA
CCAGCAGCTCAGCAACGCCCTTACTCTTAGGATCGTGGGTTTAACTTGCA
CAGCGAACCGGAGGAGGAACGCGCCGTCGATTGTGCCTGGGTTCCCTTTC
CCTCCTTCTCAGTCTCCCTACCTTGGCATGCACTTTTATTACAATGGCCT
TGCCGGGGCAGGCTCGTACCGACGCTCGATATTCACCACTGCGGCCGCCT
TAGCGTCCGCATATTACATGGGAGGTCTAGCCCGTGGGTCCGCATCAGCG
TCGTGTGAGGCACCATTACCTCCTCCCCCCCCTCCTTCCTCCTCCTCCTT
CTCCTCCTCGCCTTCCTCCTCTTCGTCCACCGATGGCCAAGACTCTCAGC
CCCGTTTCATAAAATTCCCCTTACGGCGTGATTCCGACGGCACGGCTGGA
AGGGGGGCTACTTCTGTCACCTCGATCTACCCAGGCAAAGGCCACAGCAT
ACGGCGCTCTTCGTCTTCCACCTCCTCCCCTACCGGCTCCTCCAAGGCCA
GCGGCGGCGCTGGCGGGCCCTACACCACGTCCGTCGTCGCTTTCAAAGGA
CAGAGGTCCTACATGGAGGACGATTTTTTTATTTCCAAGGACGGGTCTTT
CGCTGGCGTCTACGATGGGCATGGGGGAGCAGCTGTTTCGAAATACCTCC
GACAGAATCTGAACGCTCAATTCTTGGCGGCATTGCCGGACGCGGACATG
CGAAGGCTTGGACAGGAAAAGGTGACGGAGGCGTTGGCGACGGCCTTCCG
GGTGGTGGACGAGGCAGTGGTCAAGGTCCGGCACTGGGCCTATATGGGGT
CGACGGCTGTGGTGGTGGTGATTCACGCGGAGGAGGCCAAGGCAAAGGAG
GGGGTGGAGGAGGGCGGGCGGGCGGGCGCCTTGAAACGTACGTTGATCGC
GGCCAACGTAGGGGACTCGCGTGCCGTCCTGAGCCGTCGGGGCCAGGCTG
TGGACCTCACCGACGACCACAAACCTAACAAGCCCAGCGAGCTGGAGCGC
GTCAAGGCGCTGGGCGGGACGGTGCGATGGTACGGCTTGTTGGAACAGGA
CGGGTCTCCCATGGAGGGCATGGGCGTGTACCGGATCAACGGGAATCTGG
CCGTGGCTCGTGCCTTTGGGGACAGGAGCGAGCGCCCTTTTGTCTCGAGC
GAGGCGGAGATCAAGCAGCTGGCGGTGGAGGAGGGGGACGAGTTCGTCAT
TTTGGCCACGGACGGGCTGTGGGACGTGATGAGTTCGGAGGAAGCGGTGA
ATTTCGTCCACTCGGTGATGAGTGCCAGTGTCGGGGCCTTGACGGAAGGC
GTGGGCGACGGGGTGGGAGGGGCCGGGGCGGAAGGGGTTGCGGGGCAACG
GCCTGCGGACATGAAAATCTTCGACTGGACGAAACAGCACGCCGACGACA
GGGGAATCATCCGGGCGGCCATGATGGCGCGCAAGAAGAAAATGGCCCGG
TATTTGAGTGAGGAGGCGTTTCGGCGGGGCACCTCCGACAACGTGACTGT
GGTAGTCGTCTGGTTCTGAGTCCGGGTCAGTGGTGTGCCGCCACGATCAG
GGAGGTGACCTGGTAGTGGGTAGGAGTTCAGGTGGCACGCGCGCACCGGG
CAGATAAATGGCGGTGTGCCAAGTGCGTTGCGATGAGGAAAGGGGAGGTA
GCTGAGGATATCCACGAGGGCTGCGGGGCGGGGCAGTTCGGGGGAGGGGG
AGGGAGGGAGGGAGGGAGGAAGGGTATGGGCGCGACTGTGAAAGGCATAG
CGAACGGCAAGGCCCACGGTGAGGGCGTTTTATCTGCCGTCGGGGTCCGT
TGAGAGAGCGGATATTGGTTGGCGTGGGGATCGGTGGTACAGAAGGAAAG
CAAATAGGGGTGAGGGTAGCACAGGTCTCGCGGCGCCTGCCCCTGTTCTG
TGATGAGC

protein sequence of rna104

>rna104-protein ID=rna104-protein|Name=rna104|organism=Nannochloropsis gaditana|type=polypeptide|length=420bp
MFSLCISILLFCSLSRTVEARGCQVRNHAGRPVDFYWMDVVNWGTYITQT
PVPMPNETSFALKTYESHRFFVAWGDEAGEVQSWDPNSIPLNAQFVHRGY
DQVVTALVDKNGQLYLQDWDVHEWGMDRLVQAIEQCNLTTSGNVEKEDAQ
ARCVMKQANTIISRFKRERDSIKAQVDKMQTRMAGSFCTGTGRFQTPARR
TFEWEGRQVNVLADTGNVSVFHLPAFLDVSGTTNLITGAPPNGTRYLEVF
PNPKMKFDASLVEAQAWGRAFVQSQLGGSMQDKTSDKEPLRIFRYDKKEF
HAPPCDGICQKLLLPSAEYAATLIMYPQHSKQADRDRTAWYFTTEDANTD
IGFTSQGNDAVLFLYKNPTVGYAPALLPQLIPCISMSKEMFVSSTWIRRP
VDEKEKRAEGSSNSRVEDEL

mRNA from alignment at CM002455.1:283765..285585+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna104 ID=rna104|Name=rna104|organism=Nannochloropsis gaditana|type=mRNA|length=1821bp|location=Sequence derived from alignment at CM002455.1:283765..285585+ (Nannochloropsis gaditana)
CCGCATCACTTGCCTTGCGGCGACGACCTTCTCTGTAGCCTCAGTACCAC
ATGGCAAAAGAACTGTGGACTTTAACCCTgtcattttcccttctctcgaC
GCGCACACACTCGCATACCCATCCCCTTCAATCATATACTCGTTGATAGC
ATTCCGTGGGCACCTTCTGTTTCCTCGTACACCATCGTGGCACCTTGGCG
AAGGCCCATTTGAAGCCTCTTTCTGGAGCACGCCGTCTCTTGAGCCAAAC
CCGCATCGATATAAAGGCATGTTCTCCCTCTGCATCTCCATTCTGCTATT
CTGTTCCCTATCCCGCACCGTGGAAGCGCGCGGGTGTCAAGTCAGAAACC
ATGCCGGGCGGCCCGTTGACTTCTATTGGATGGACGTTGTGAACTGGGGG
ACCTACATTACTCAAACTCCCGTGCCCATGCCGAATGAGACATCCTTTGC
CCTTAAAACATACGAGTCACATCGATTTTTCGTCGCCTGGGGGGATGAAG
CTGGCGAAGTGCAATCGTGGGACCCGAACAGCATTCCTTTGAACGCCCAG
TTTGTTCACCGTGGGTACGATCAAGTCGTCACGGCGTTGGTAGATAAAAA
TGGGCAGCTTTATCTTCAGGACTGGGACGTTCATGAATGGGGCATGGACC
GCCTTGTTCAGGCCATTGAGCAGTGCAATCTGACCACGTCTGGAAatgtg
gaaaaggaagatgcACAGGCCCGCTGTGTCATGAAGCAAGCAAACACAAT
CATTTCCCGGTTTAAGCGGGAGCGAGACAGTATCAAGGCCCAGGTCGACA
AGATGCAGACACGCATGGCAGGATCCTTTTGCACCGGGACGGGGCGATTT
CAAACCCCTGCTAGGCGTACCTTTGAATGGGAGGGACGACAAGTGAACGT
CTTGGCCGATACAGGCAACGTAAGCGTCTTCCACCTGCCCGCGTTCCTCG
ACGTTTCGGGGACCACCAACTTGATAACGGGTGCCCCGCCCAACGGCACC
CGGTACCTGGAGGTCTTCCCGAACCCCAAGATGAAGTTTGACGCCTCCCT
AGTGGAGGCCCAGGCCTGGGGTCGCGCGTTTGTTCAGTCTCAATTGGGAG
GGAGCATGCAGGATAAGACAAGCGACAAGGAGCCATTGCGCATCTTTCGC
TACGACAAGAAGGAGTTTCATGCTCCCCCTTGTGATGGCATCTGCCAGAA
ATTGCTCCTGCCCTCGGCTGAGTACGCCGCTACCCTCATCATGTACCCCC
AGCACTCCAAACAGGCCGACCGCGACCGCACGGCCTGGTATTTTACCACT
GAGGACGCAAATACCGATATCGGGTTTACCTCGCAAGGCAACGACGCCGT
TCTCTTCCTTTACAAGAACCCAACCGTCGGCTATGCCCCTGCTTTGCTTC
CCCAGCTGATTCCATGCATATCCATGTCCAAAGAGATGTTTGTATCCTCT
ACGTGGATCCGTCGACCGGTcgatgagaaggagaagcgagCAGAAGGTAG
TTCCAACTCCAGGGTGGAAGACGAACTTTAGGAGAGCAAGAAGATGGCCA
CGggctcctcctgcttggtCGCATTAGGCGGGAAAAAtccaagaagaagc
ggatAGAAAGCAATGGGCCAGGCGCATGGGCGCTCATTCGAATGCATCTC
ACTTCACTTTTTGCAAAGGAAAAGGTGTCGCACGTATTTCTTTCTTTAAG
CTCGTTTGTTCCATGTTAATGTGAGGGCAAACCCACCACAAGCTTATCCA
TTTCCTGCCGCGGACACTCGCGGAATATCATTGTGCTCCGTGAGCACCGA
CAAGTACTGATTGAACTCATC

Coding sequence (CDS) from alignment at CM002455.1:283765..285585+

>rna104 ID=rna104|Name=rna104|organism=Nannochloropsis gaditana|type=CDS|length=1263bp|location=Sequence derived from alignment at CM002455.1:283765..285585+ (Nannochloropsis gaditana)
ATGTTCTCCCTCTGCATCTCCATTCTGCTATTCTGTTCCCTATCCCGCAC
CGTGGAAGCGCGCGGGTGTCAAGTCAGAAACCATGCCGGGCGGCCCGTTG
ACTTCTATTGGATGGACGTTGTGAACTGGGGGACCTACATTACTCAAACT
CCCGTGCCCATGCCGAATGAGACATCCTTTGCCCTTAAAACATACGAGTC
ACATCGATTTTTCGTCGCCTGGGGGGATGAAGCTGGCGAAGTGCAATCGT
GGGACCCGAACAGCATTCCTTTGAACGCCCAGTTTGTTCACCGTGGGTAC
GATCAAGTCGTCACGGCGTTGGTAGATAAAAATGGGCAGCTTTATCTTCA
GGACTGGGACGTTCATGAATGGGGCATGGACCGCCTTGTTCAGGCCATTG
AGCAGTGCAATCTGACCACGTCTGGAAatgtggaaaaggaagatgcACAG
GCCCGCTGTGTCATGAAGCAAGCAAACACAATCATTTCCCGGTTTAAGCG
GGAGCGAGACAGTATCAAGGCCCAGGTCGACAAGATGCAGACACGCATGG
CAGGATCCTTTTGCACCGGGACGGGGCGATTTCAAACCCCTGCTAGGCGT
ACCTTTGAATGGGAGGGACGACAAGTGAACGTCTTGGCCGATACAGGCAA
CGTAAGCGTCTTCCACCTGCCCGCGTTCCTCGACGTTTCGGGGACCACCA
ACTTGATAACGGGTGCCCCGCCCAACGGCACCCGGTACCTGGAGGTCTTC
CCGAACCCCAAGATGAAGTTTGACGCCTCCCTAGTGGAGGCCCAGGCCTG
GGGTCGCGCGTTTGTTCAGTCTCAATTGGGAGGGAGCATGCAGGATAAGA
CAAGCGACAAGGAGCCATTGCGCATCTTTCGCTACGACAAGAAGGAGTTT
CATGCTCCCCCTTGTGATGGCATCTGCCAGAAATTGCTCCTGCCCTCGGC
TGAGTACGCCGCTACCCTCATCATGTACCCCCAGCACTCCAAACAGGCCG
ACCGCGACCGCACGGCCTGGTATTTTACCACTGAGGACGCAAATACCGAT
ATCGGGTTTACCTCGCAAGGCAACGACGCCGTTCTCTTCCTTTACAAGAA
CCCAACCGTCGGCTATGCCCCTGCTTTGCTTCCCCAGCTGATTCCATGCA
TATCCATGTCCAAAGAGATGTTTGTATCCTCTACGTGGATCCGTCGACCG
GTcgatgagaaggagaagcgagCAGAAGGTAGTTCCAACTCCAGGGTGGA
AGACGAACTTTAG

Synonyms

Publications