rna10394, rna10394 (mRNA) Nannochloropsis gaditana

Overview
Namerna10394
Unique Namerna10394
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1398
Alignment locationKK037279.1:5498..5969 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101431g1.5767.mrna
Orig protein idgnl|cribi|Naga_101431g1.5767
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037279.1supercontigKK037279.1:5498..5969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101431g1gene10098Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10394rna10394-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20312.1cds10362Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10394 ID=rna10394|Name=rna10394|organism=Nannochloropsis gaditana|type=mRNA|length=1398bp
GTGTTGTAGACTTTCCCTTTGCCCCTCTCTCTCGCTGTTTCCTCCATCTC
TTTGTCGAGATGCCTCTCGCGTGTGAAAATTGGACACGAAGGGGCCGTGC
ACGTGCATTCAGGGGTGCGACGTGGATCATCGTGTGTCCGTGATGTCGGC
GGTTGCCTGCAAGACCTCATATTTTTTATGTGTTGGCCGGCTTTTATCTT
GACTGCGTGCGTGCTGTCGCAATCTCTTCACAAGAACCACCCCCCCTGAA
GTACTTCCTTTCTTCCCCTCCTCCCTCCCGCCCTCCCTCCCTTCTCTCTC
ACGTACGTTCCACGCTTGATTTGCATTTCCCCCTACAGCGGTGAAGATTC
CAGGATTTCTCTTCCTTTCAGCCAACCCAGCTCCACCATGCGCTCCCCTC
CGCTCCGTCCCTCCCTCCACCTCTTCTTCCTTCTCTCCCTGCTCGCCTTG
GTCTGGTCTCCTGCCTCCTTCCCTGGGGCTACCGCTGTCGACGTTCAAGA
AGTAGCCGGTCTGGAAGGCGATGCCGTCGGGGGGGGTCCTTCCTCCTCCT
CTTCTTCACTTACTTTGGTGTACTTTGGGATGCCGTTTAAGATCGATGAC
CTTGATTTTTCCGAAGCGGCAGGACTGACCATTGCGGACGTCAAGAAGAG
GATCGAAGCCGAGTACGCGATTCCTGCAACGGAGCAGTCCCTCTTCTTGG
GGACCTCCCTATTGGACGACACCGCCACCTTAAGCGCAGCCAACATCACC
CCTGGTTCCACGCTTGAAGTGAGGCACGAAATCGCCTTGAAAGAAGGAGT
GGAGCTCCCCGCGGAGAAACATGACTTCTCCTTTGAGGAACTTAAGGAGT
ACTTTAACATCGATTTGGCAAGTTTTCGCGCCAAATGGGAGGCAACTCAG
GAGGAAATGAAGCAGGAGGTGTTGGAAAGCGTGGAGGAAGGCCGGCAAAT
TTTGCAACATGTGGGCGCGAGCCTCCGGAAGCTCGGGCATTTTTTCCAAA
AAATGGCGCGAAAATGTCTGGGGCTCCTTCAGGCGGTGGGGAGGTTGTTC
ACGGGAGGGAAGAAGGGAGGGAAGGAGGAGCTGTAAAGGCAACGGATCAA
GGGAGGAGAGGTGCAGGGAGGGAGGAGGGGAAGGAGGAAAAGAGGGGAGG
GCGCAAAAAAGGGTTGATATTTAAGGGGAGGGAGGAGGGGAAGGAGGAAG
GGAGGGGAGGGCGCAAAAAAGGGTTGATATTTAAAACTCGAGCGAGCGAA
GGAGGGGGAAATGAAACGAAAAAATGAGGAGGACAGGAGCGAGAGGATGC
AGCAAAACGGGCTCGAGAAGGGGCTGAATTGATTTAACAAAACATGGTGT
GAGAGGTCTCCCTGGCCGGCAGAAAGAGTGTGGGAGGGAAGGAGGGAG
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protein sequence of rna10394

>rna10394-protein ID=rna10394-protein|Name=rna10394|organism=Nannochloropsis gaditana|type=polypeptide|length=96bp
MPHRNPVSPPCTRRQGYKIAVSHSGGGFLSIVGSPWYSSLHAFFSSRPSV
RVILVLHKDPSTKRQPRADMTNLIRPVALVDLAAAFARMGRPSSNR
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mRNA from alignment at KK037279.1:5498..5969+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10394 ID=rna10394|Name=rna10394|organism=Nannochloropsis gaditana|type=mRNA|length=472bp|location=Sequence derived from alignment at KK037279.1:5498..5969+ (Nannochloropsis gaditana)
ATGCCTCATCGAAACCCTGTATCTCCACCATGCACACGCAGGCAGGGGTA
TAAGATAGCTGTATCCCACAGTGGTGGAGGATTTCTGTCTATTGTGGGCT
CTCCTTGGTACTCGTGTGCCTCGCAGACGGGCGATTAATCATCAAATAAC
GGGGAAAAAACaggcttccctccttgacaACGACAGGCAAACAACCATTT
CACGCACGTTCTCTCTGAGCTTTACATGCTTTCTTTTCTAGTCGGCCATC
CGTGCGAGTAATTTTGGTATTGCACAAAGACCCGTCGACTAAACGGCAGG
TAAAACTTGCTTTTCTATTAGTACACTGACCATTGAAAATATAGGCGACC
GATTCCTCCGTATCCATCATTCCCAGCCAAGAGCAGACATGACCAATCTC
ATAAGACCTGTCGCTTTGGTGGATTTGGCGGCAGCCTTTGCCCGCATGGG
AAGACCCTCGTCAAACcggtaa
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Coding sequence (CDS) from alignment at KK037279.1:5498..5969+

>rna10394 ID=rna10394|Name=rna10394|organism=Nannochloropsis gaditana|type=CDS|length=873bp|location=Sequence derived from alignment at KK037279.1:5498..5969+ (Nannochloropsis gaditana)
ATGCCTCATCGAAACCCTGTATCTCCACCATGCACACGCAGGCAGGGGTA
TAAGATAGCTGTATCCCACAGTGGTGGAGGATTTCTGTCTATTGTGGGCT
CTCCTTGGTACTCGTCTTTACATGCTTTCTTTTCTAGTCGGCCATCCGTG
CGAGTAATTTTGGTATTGCACAAAGACCCGTCGACTAAACGGCAGCCAAG
AGCAGACATGACCAATCTCATAAGACCTGTCGCTTTGGTGGATTTGGCGG
CAGCCTTTGCCCGCATGGGAAGACCCTCGTCAAACcggtaaATGCCTCAT
CGAAACCCTGTATCTCCACCATGCACACGCAGGCAGGGGTATAAGATAGC
TGTATCCCACAGTGGTGGAGGATTTCTGTCTATTGTGGGCTCTCCTTGGT
ACTCGTCTTTACATGCTTTCTTTTCTAGTCGGCCATCCGTGCGAGTAATT
TTGGTATTGCACAAAGACCCGTCGACTAAACGGCAGCCAAGAGCAGACAT
GACCAATCTCATAAGACCTGTCGCTTTGGTGGATTTGGCGGCAGCCTTTG
CCCGCATGGGAAGACCCTCGTCAAACcggtaaATGCCTCATCGAAACCCT
GTATCTCCACCATGCACACGCAGGCAGGGGTATAAGATAGCTGTATCCCA
CAGTGGTGGAGGATTTCTGTCTATTGTGGGCTCTCCTTGGTACTCGTCTT
TACATGCTTTCTTTTCTAGTCGGCCATCCGTGCGAGTAATTTTGGTATTG
CACAAAGACCCGTCGACTAAACGGCAGCCAAGAGCAGACATGACCAATCT
CATAAGACCTGTCGCTTTGGTGGATTTGGCGGCAGCCTTTGCCCGCATGG
GAAGACCCTCGTCAAACcggtaa
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Synonyms
Publications