rna1034, rna1034 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1034
Unique Name	rna1034
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2396
Alignment location	CM002456.1:1009215..1011316 +

Link to JBrowse

Properties


Property Name	Value
Product	phytochelatin synthase
Orig transcript id	gnl\|cribi\|Naga_100050g25.6853.mrna
Orig protein id	gnl\|cribi\|Naga_100050g25.6853
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1009215..1011316 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g25	gene996	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1034	rna1034-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29630.1	cds1033	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1009215..1011316+
coding sequence from alignment at CM002456.1:1009215..1011316+

mRNA sequence

>rna1034 ID=rna1034|Name=rna1034|organism=Nannochloropsis gaditana|type=mRNA|length=2396bp
ATGCCAGATTTCTGGAGCAGCGAGGAGGAGGAGGAGGAGGACGACGAGGA
GGTGGAGGAGGAAGAAGAGGAGGAAGAAGAGGAAAATGAGGAGGAAGAAG
AGGAGGAAGAGGAGGAGGAAGAAGAGGAGGAGGGAGGTGAAGAAGATGAT
GATGAGCATGCCGCCGGCTCCTGCTCCTCCGCCTCCGCCCCCCTCGAGCC
CTCCCCTGAGAGCCGGGAAGTGGTCGCCCACGCCTATCGCCCGGTGCGGG
GGGAGGACATCTACGGGCGGCCCCTTGAGGCCCCGGCAGGGACCGACGCC
CCGGGCAAGTACCTTCCCCCGCACTTGCGGTCCGGGCGGAGGACGGGGGA
GGGACAAGGAGGGGAGGATCCCGAGGACACCACGAGCGCCGAGTTTTTGC
TCCTTCGTCGCACCTTGAACGGGCTCGCGAACCGGGTTTCGGAGGCGAAC
CTGGAGACGAGCATCCGAGACGTCAGCGCCCTCTATGCACGGCACCCGCG
GAGGCGCATGCACGCGCTCCTGACCGAGAGGCTGCTGCAGACGTGCGTGA
GCGAAGCCCAGGTGATGAAGGGCTTGGTGCCCACGCACGCGGCCCTTGTG
GGGGGCGTGCACATGGCCGGAGGGGCCGGGGGAGGGGAGTTGGGGGCGCA
TGTGCTGGAGCGAGTCTGTCAGGAGTACCACACGGCGCGGAAGCGGCTGC
TGGCGATAGGGGAGGGGGAGGGAGGGGAGGACGAGGAGGAGAGGGAGGCT
ATCGAGGCGGGCCTGGCCCGCCGCCTGGACAACCTGGTCCTCATTCTTGC
CTACCTGTACTCCTTCGGGGTGGTGGCTTGCCCCCTCGTCTACGGCTTGA
TCCGTGAGCTGGTGGCCCCCCTGGGAGAGAGGGACGTGGAGCTCCTCCTC
CTGCTCCTGCGCACGGCCGGGCCTCAGCTGAGGGCGGACGACCCGCGGGC
GCTCAAGGACATCGTGCTGGCGGTGCAGGAGCGCGCGGCCTCGGTGGGGG
CCGGAGAGGGGGACGTCAACGCCCGGGTCCGGCACATGCTCGAGACCCTG
AACGACTTGAAGAACAACAAGCGCCGACAGGCCCAGCTCCAGGAAGGGGA
ACGCACGCAGCGTCTTCGCAAGCTGGTGCTCCGGGCGAGGAGCGGCGGGA
TGGTCGGCAAAGGCCAGGGCGGGGGAGGGGGCGGGGAGACCCTGCACGTC
TCTTGGGAGGACATGCGCGACTCGGCCTCCCGCGGCCGGTGGTGGCGCGT
GGGAGCCGCCTGGGCGGGGAAGGAGGCGGAGAGGGGCGAGGGGGGGCAGC
CGGGTGTCGCAGGCCGGGGCCAAGGGTTTCCGATGGCCGCCGCGAGTCCC
GTGAGCTCGAGCCTGCAGGAGAAGATCAACTCCTTGGCGTCGAGGCAGCG
CATGAACACGGACGTGAGACGGGCGATTTTTGCGAGCGTCATGACCGCCT
GCGACTACCAGGACGCCTTCGAACGCCTGATGCGCCTGAACTTGAGCGAC
AAGCAGGAACGGGAGGTGGTGCGGGTCATCGTGGATTGTCTGGGGCAGGA
GCGGGCCTACAATCCGTACTACGCGTACTTGCTAGGACGACTGTGCGAGT
ACCACGATAAATACAAATTCACCCTCCAGCTCACCTATTGGGACATTTTT
AAGGTATTGGACCAGGAGAATGCTGGCTTTGGAGCGGACGACGGGGAGGG
TCGGAGCACTCCGGGCGGGGAGAAGGTAGAGAGAAGGGCGGCAGGGGGCC
ACAAGGCCGTGAACCTTGCCAGGGCTCTCAGCCACCTGATCGCGAAGGGC
TGGCTCTCTCTGGCGGTGTTGAAGGTGGTGGACGTGGCGAGTGTCGGGGC
TGTGGCTGCGTCCTTTTTTCGTGTCTTTTGGGCCGATTTTCTGGACGAGA
GAAAGCAGCCGGACCAAGAGGTCCTGAGGGCGGTGCGGCGGGTGGCCGTG
TCGAAGGAGCCTTTCAGCCTGACCGAGACACTGACGGCCTGTCTGCACCG
GTTCGCCCTGGGTGAGAACTGGATCGGGGACACGGAGGAGAGGAAGAGGC
ACAAGAAGCGGGCCAAGTCTTTGGTGAGACTGCTGGAGAAGCTCTCAGTG
AGCCAGTTCATGGGAGAAGGGGACGTGGAGAGGGTGCGACGGGAGGGAGA
AGGTGGGTGGGGGACTGTGTAGGATCGTTAGAATGTAGATGCGCGTGAGA
GAGGTTAGCCTCAGGCGCACATGTGAGCAGTGCATGGTGTGAAGCACCAC
GGGAATTCTGTCACGATGAAACTGCCAGCGTAGCGCGGGAGTCACAGGCA
GCTAGGGAGGATGACAAAGGAGATTGCTTAGGACATACAGGAGTAATGTG
ACCTTGTAAAGGGGTCAAAATTTACATAAATCACATCTTATGATGT

protein sequence of rna1034

>rna1034-protein ID=rna1034-protein|Name=rna1034|organism=Nannochloropsis gaditana|type=polypeptide|length=586bp
MNPLHGFRRVVALGSTKHPALRCLRCLASMSAHQHSSPDTAATTSPSVSF
YEQSSTPSSTPFSREVSPPVSRKNDMGVTEALPSDFRQHVEPETSSAQVS
HPHSASEGDKAVVIHNSANSIVQSFYRRQLPTSHCVPFNSSEGRRLFQEA
LMQGGLESYFPLSEQFKTQDDPAFCGLGALTMVLNALAIDPGRTWKGPWR
WFDESMLECCEPLEVVRERGICLGKLDCLARCNGATTVLKYGDSTGLDEF
RRDIIRTTGGGREACHGGGKEGATDFSRVPGTLARAEHTNGSEQTHMQYE
QQDLLIVGYNRQVLGQTGSGHFSPVGGYHAGRDMALIMDVARFKYPPHWV
PVPLLWEAMQTVDPETQRSRGYMVVAKGMVSESLLFTIDKSRYEEFKDLA
SWIRKAADRLPLLMEAEMTRNTGVPGGESGGTVGAARLDHDRLLPLFLES
LPASIASMFVTIHESFCLRYSEKHLKSIGDLLGAIEAHPIYETMGAQHEA
RLDRFRTPCSRRHVAAEEACCAGKVVNERHVLTILYISMLEWVCQRQKWS
IFGLFPAQALHSPPLQLEVAQLKRKIAAMADEMGPR

mRNA from alignment at CM002456.1:1009215..1011316+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1034 ID=rna1034|Name=rna1034|organism=Nannochloropsis gaditana|type=mRNA|length=2102bp|location=Sequence derived from alignment at CM002456.1:1009215..1011316+ (Nannochloropsis gaditana)
GCGCAACGGCACATAAGCTGTACGCGATCCTGATATGTCTTTCACTCTCT
TGTCCATCTCTCAGGGGCGCTTTTAAAACCTCCCTTCGGCCCCTTCGCCT
TTTCCACGCAcaggcccttcctcttgcgaCCATATCGCGCCAGGTTTCAT
GAATCCCTTGCATGGTTTTCGGAGAGTCGTAGCCCTTGGCTCAACAAAGC
ATCCAGCTTTGAGATGCTTGCGCTGCTTGGCTAGCATGTCGGCCCACCAA
CACAGTTCCCCCGACACAGCCGCCACTACTAGCCCTTCCGTCAGCTTCTA
CGAGCAAAGCTCAACCCCCTCATCCACGCCATTTTCAAGGGAGGTGTCTC
CACCAGTATCGAGAAAGAATGACATGGGTGTCACTGAAGCACTCCCATCG
GACTTTCGACAGCACGTCGAACCTGAAACCTCCTCAGCCCAGGTGTCTCA
CCCCCACAGTGCTAGtgagggggacaaggcggtCGTGATTCATAACAGCG
CCAATTCTATCGTACAAAGCTTTTATAGACGGCAACTTCCTACGTCACAT
TGCGTTCCATTCAATTCCTCGGAGGGTCGGCGCCTATTTCAGGAGGCATT
GATGCAGGGCGGGTTGGAGAGCTACTTTCCCTTGTCCGAGCAGTTCAAAA
CCCAGGATGATCCCGCTTTTTGTGGCCTGGGGGCATTAACGATGGTGTTG
AACGCTTTGGCGATCGATCCAGGCAGGACATGGAAAGGCCCGTGGCGCTG
GTTCGACGAAAGCATGCTTGAGTGCTGCGAACCCCTGGAGGTGGTCCGAG
AGCGCGGGATCTGCCTAGGGAAGCTTGACTGTCTGGCGCGCTGCAATGGG
GCTACCACCGTCCTTAAGTACGGAGACAGCACGGGGCTCGACGAGTTCCG
GAGGGACATCATTCGaacgacgggagggggaagggaagcttgccatggag
gaggaaaagagggagcgacggaCTTTTCTCGTGTCCCCGGCACATTGGCC
CGCGCTGAACACACTAATGGTTCCGAACAAACGCACATGCAGTACGAACA
GCAGGACTTGCTCATCGTTGGCTACAACAGGCAGGTGCTGGGGCAGACAG
GGTCGGGCCACTTCTCCCCCGTTGGGGGTTACCACGCAGGAAGGGACATG
GCGCTGATCATGGACGTTGCCCGCTTCAAGTACCCGCCGCACTGGGTTCC
GGTCCCTTTGCTCTGGGAAGCCATGCAGACTGTGGACCCGGAGACGCAGC
GCTCGCGCGGCTacatggtggtggcgaaAGGGATGGTCTCGGAGAGCTTG
CTCTTTACCATCGACAAGTCGCGGTACGAGGAATTCAAGGACCTAGCCTC
TTGGATTCGAAAGGCGGCCGACAGGCTACCCCTTTTGATGGAGGCTGAGA
TGACTAGAAATACGGGGGTgccgggaggagaaagcggggggaCCGTCGGA
GCAGCCCGACTCGATCATGACAGGCTGTTGCCTTTGTTTTTAGAGTCATT
GCCCGCGAGCATTGCCAGCATGTTTGTCACCATCCATGAATCCTTTTGCC
TTCGATATTCGGAGAAGCATCTCAAGTCCATAGGTGACCTGCTGGGGGCA
ATAGAGGCGCATCCCATCTACGAGACCATGGGGGCACAGCACGAAGCTCG
CTTGGATCGCTTTCGCACCCCTTGTAGTCGTCGACACGTTGCTGCAGAGG
AGGCATGTTGCGCGGGAAAGGTAGTAAACGAGCGCCACGTCCTCACCATT
CTTTATATTTCGATGCTTGAGTGGGTATGCCAGCGTCAAAAATGGTCAAT
ATTTGGCCTCTTTCCGGCTCAAGCGTTACACAGTCCACCTTTGCAGCTGG
AAGTAGCTCAATTGAAGCGGAAAATTGCTGCCATGGCAGATGAAATGGGA
CCAAGGTGATGAAGTGTACCGAATATAAATCAGTGAGATAGGTAATAGAA
ACGCAGTATCGATATGGGTCAAGTAAAGAAGCTCGACTGTGATGCAATGT
GTGGAACGTATCctgtccctctttcctgcgtTTCCACACACAGAACAGGA
AAAACTATGAAATTGTGCTTTTCGTTCGAGTCTTTTAACCACACCCACTC
Gc

Coding sequence (CDS) from alignment at CM002456.1:1009215..1011316+

>rna1034 ID=rna1034|Name=rna1034|organism=Nannochloropsis gaditana|type=CDS|length=1761bp|location=Sequence derived from alignment at CM002456.1:1009215..1011316+ (Nannochloropsis gaditana)
ATGAATCCCTTGCATGGTTTTCGGAGAGTCGTAGCCCTTGGCTCAACAAA
GCATCCAGCTTTGAGATGCTTGCGCTGCTTGGCTAGCATGTCGGCCCACC
AACACAGTTCCCCCGACACAGCCGCCACTACTAGCCCTTCCGTCAGCTTC
TACGAGCAAAGCTCAACCCCCTCATCCACGCCATTTTCAAGGGAGGTGTC
TCCACCAGTATCGAGAAAGAATGACATGGGTGTCACTGAAGCACTCCCAT
CGGACTTTCGACAGCACGTCGAACCTGAAACCTCCTCAGCCCAGGTGTCT
CACCCCCACAGTGCTAGtgagggggacaaggcggtCGTGATTCATAACAG
CGCCAATTCTATCGTACAAAGCTTTTATAGACGGCAACTTCCTACGTCAC
ATTGCGTTCCATTCAATTCCTCGGAGGGTCGGCGCCTATTTCAGGAGGCA
TTGATGCAGGGCGGGTTGGAGAGCTACTTTCCCTTGTCCGAGCAGTTCAA
AACCCAGGATGATCCCGCTTTTTGTGGCCTGGGGGCATTAACGATGGTGT
TGAACGCTTTGGCGATCGATCCAGGCAGGACATGGAAAGGCCCGTGGCGC
TGGTTCGACGAAAGCATGCTTGAGTGCTGCGAACCCCTGGAGGTGGTCCG
AGAGCGCGGGATCTGCCTAGGGAAGCTTGACTGTCTGGCGCGCTGCAATG
GGGCTACCACCGTCCTTAAGTACGGAGACAGCACGGGGCTCGACGAGTTC
CGGAGGGACATCATTCGaacgacgggagggggaagggaagcttgccatgg
aggaggaaaagagggagcgacggaCTTTTCTCGTGTCCCCGGCACATTGG
CCCGCGCTGAACACACTAATGGTTCCGAACAAACGCACATGCAGTACGAA
CAGCAGGACTTGCTCATCGTTGGCTACAACAGGCAGGTGCTGGGGCAGAC
AGGGTCGGGCCACTTCTCCCCCGTTGGGGGTTACCACGCAGGAAGGGACA
TGGCGCTGATCATGGACGTTGCCCGCTTCAAGTACCCGCCGCACTGGGTT
CCGGTCCCTTTGCTCTGGGAAGCCATGCAGACTGTGGACCCGGAGACGCA
GCGCTCGCGCGGCTacatggtggtggcgaaAGGGATGGTCTCGGAGAGCT
TGCTCTTTACCATCGACAAGTCGCGGTACGAGGAATTCAAGGACCTAGCC
TCTTGGATTCGAAAGGCGGCCGACAGGCTACCCCTTTTGATGGAGGCTGA
GATGACTAGAAATACGGGGGTgccgggaggagaaagcggggggaCCGTCG
GAGCAGCCCGACTCGATCATGACAGGCTGTTGCCTTTGTTTTTAGAGTCA
TTGCCCGCGAGCATTGCCAGCATGTTTGTCACCATCCATGAATCCTTTTG
CCTTCGATATTCGGAGAAGCATCTCAAGTCCATAGGTGACCTGCTGGGGG
CAATAGAGGCGCATCCCATCTACGAGACCATGGGGGCACAGCACGAAGCT
CGCTTGGATCGCTTTCGCACCCCTTGTAGTCGTCGACACGTTGCTGCAGA
GGAGGCATGTTGCGCGGGAAAGGTAGTAAACGAGCGCCACGTCCTCACCA
TTCTTTATATTTCGATGCTTGAGTGGGTATGCCAGCGTCAAAAATGGTCA
ATATTTGGCCTCTTTCCGGCTCAAGCGTTACACAGTCCACCTTTGCAGCT
GGAAGTAGCTCAATTGAAGCGGAAAATTGCTGCCATGGCAGATGAAATGG
GACCAAGGTGA

Synonyms

Publications