rna1033, rna1033 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1033
Unique Name	rna1033
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1583
Alignment location	CM002456.1:1005505..1007900 -

Link to JBrowse

Properties


Property Name	Value
Product	nucleolar mif4g domain-containing protein 1
Orig transcript id	gnl\|cribi\|Naga_100050g26.6856.mrna
Orig protein id	gnl\|cribi\|Naga_100050g26.6856
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:1005505..1007900 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g26	gene995	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29633.1	cds1032	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1033	rna1033-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:1005505..1007900-
coding sequence from alignment at CM002456.1:1005505..1007900-

mRNA sequence

>rna1033 ID=rna1033|Name=rna1033|organism=Nannochloropsis gaditana|type=mRNA|length=1583bp
CATGTCGAAACCATCCAATTTCGACCTAATCAGGGAGGCCATCCTTGCTT
TGAAAGATCGCACAGGCTCCTCTCCCGCGGCTATTAGGGCCTACTTGACA
AAAAATAGTCCCTCATTTCAGGACGACCATCACTTCAAAGCGGCTCTCAG
GTCGGGCGAAAAAACTGGAAAGTTGATCAAAGTCAAAGCGTCGTACAAGC
TGAGTGAGGCCGCCAAAAAAGTCGCGAAAGCGGTTAAGGCAGTCAAGAAG
GTGACGAAGAAAGCAAGCGCTGTGGCCAGGAAGAGCGCCCCCAAAGAGAA
GGTAGCATCCCTAAAAAGAGCTGCAGCTGGTCCCGCGCCGGCGAAGAAAG
TTGTTGCAAAGAAAAACTATGCCCCTGGAAAGAAGTCTTCAACAAAGAAA
GCGGTGCCTGCCAAGAAGAGAACTGCCGCAAAAAAATCCGCACCCGCCAA
GAGACCTGTCGCGAAAAAAACTGGAGCAAAGAATATTGCCCCCACGAAGA
AAGCTGCTTCTTCAAAGAAATCTGCGTCTTCAAAGAAAACTACTCCTGCA
ACGAAAGCTGTCGCTTCCAAAAAGACAGCTCCCAAAAGGGCCGCTCTCAA
AAAGAAGAGCACCCTGAAGAAGAAGTGAAGGATCGCACCCATGGCCAAGC
TGTCATCGATCACACGGTATCTAGGTTTCTTCTCGTCGCAGCACCCATGT
CATTTCATCGTTATCACTGCAACTTGCATCTCCTCGTGTATTTCACGACT
CCATTCGTTATCAGCTCTCATCGCACGGTACGACTGCCTTTGTGAGGGGA
TGGAAAGGGCATCATTTACTCGTTTCCCGTCTGACGCGTTGTCTTCTTGG
GGGGTTTCTTTCCCGCGTCGCGTCTCTGGATAGCACTTCTCATCCAGCTG
ATCAAGGATTTCTTCGGCACGCGTCCTTCTAGATACATCATGGGGGGAAA
ATAACTTCACTCAACAAATGAAAACATCATTCACACAATTATGGCGGTTT
TGTATCGCGCGCAAGTCTCATCGATTACGCCGCATGCCACGTCATTGCCA
TACCCTGCGCGTATGTATCATGGTGAAGCTCATCGCCGCGCGCATAACTT
CCGTTGGACAGACACACCCTTCCGCACGCGGCACATCGCCTCCGCTCTCG
CGGTGCGTACTGAGAAGAACGGCCCGATGATTGATTGGCACATGTAGAAT
GCACAAAAAAACTTTTCCACTTTCTGTGTGAGTAGTGTCTCCTTGCGCGT
GGTGTAACGCACTTACACCCACTCGACAGATGTAACGCCGCTTTGAAATA
TGAACATGCTTCAGACCGTCCGTCGTCGGATCCAGCCACTTCCTGTCCCG
CGCCAACAGAAGCGAGGCCACTAATTACCAGGGTTCTACTTCGAACCCCC
CGCTCAAATATTTGACCGCCCTAACCTGGCGATGGCTTTTGTTTTGTGAG
ATCATACTTTCCCCTCCTCAAGATGGCGCTTCCTCGAAGTGGAAGAACAG
AGCACACATTCAACGAATAAAGAACACCAGAGGAAGCACAAGCTTCCCAT
GTACATCATAAGATGTGATTTATGTAAATTTTG

protein sequence of rna1033

>rna1033-protein ID=rna1033-protein|Name=rna1033|organism=Nannochloropsis gaditana|type=polypeptide|length=723bp
MPDFWSSEEEEEEDDEEVEEEEEEEEEENEEEEEEEEEEEEEEEGGEEDD
DEHAAGSCSSASAPLEPSPESREVVAHAYRPVRGEDIYGRPLEAPAGTDA
PGKYLPPHLRSGRRTGEGQGGEDPEDTTSAEFLLLRRTLNGLANRVSEAN
LETSIRDVSALYARHPRRRMHALLTERLLQTCVSEAQVMKGLVPTHAALV
GGVHMAGGAGGGELGAHVLERVCQEYHTARKRLLAIGEGEGGEDEEEREA
IEAGLARRLDNLVLILAYLYSFGVVACPLVYGLIRELVAPLGERDVELLL
LLLRTAGPQLRADDPRALKDIVLAVQERAASVGAGEGDVNARVRHMLETL
NDLKNNKRRQAQLQEGERTQRLRKLVLRARSGGMVGKGQGGGGGGETLHV
SWEDMRDSASRGRWWRVGAAWAGKEAERGEGGQPGVAGRGQGFPMAAASP
VSSSLQEKINSLASRQRMNTDVRRAIFASVMTACDYQDAFERLMRLNLSD
KQEREVVRVIVDCLGQERAYNPYYAYLLGRLCEYHDKYKFTLQLTYWDIF
KVLDQENAGFGADDGEGRSTPGGEKVERRAAGGHKAVNLARALSHLIAKG
WLSLAVLKVVDVASVGAVAASFFRVFWADFLDERKQPDQEVLRAVRRVAV
SKEPFSLTETLTACLHRFALGENWIGDTEERKRHKKRAKSLVRLLEKLSV
SQFMGEGDVERVRREGEGGWGTV

mRNA from alignment at CM002456.1:1005505..1007900-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1033 ID=rna1033|Name=rna1033|organism=Nannochloropsis gaditana|type=mRNA|length=2396bp|location=Sequence derived from alignment at CM002456.1:1005505..1007900- (Nannochloropsis gaditana)
ATGCCAGATTTCTGGAGCAGCGAGGAGGAGGAGGAGGAGGACGACGAGGA
GGTGGAGGAGGAAGAAGAGGAGGAAGAAGAGGAAAATGAGGAGGAAGAAG
AGGAGGAAGAGGAGGAGGAAGAAGAGGAGGAGGGAGGTGAAGAAGATGAT
GATGAGCATGCCGCCGGCTCCTGCTCCTCCGCCTCCGCCCCCCTCGAGCC
CTCCCCTGAGAGCCGGGAAGTGGTCGCCCACGCCTATCGCCCGGTGCGGG
GGGAGGACATCTACGGGCGGCCCCTTGAGGCCCCGGCAGGGACCGACGCC
CCGGGCAAGTACCTTCCCCCGCACTTGCGGTCCGGGCGGAGGACGGGGGA
GGGACAAGGAGGGGAGGATCCCGAGGACACCACGAGCGCCGAGTTTTTGC
TCCTTCGTCGCACCTTGAACGGGCTCGCGAACCGGGTTTCGGAGGCGAAC
CTGGAGACGAGCATCCGAGACGTCAGCGCCCTCTATGCACGGCACCCGCG
GAGGCGCATGCACGCGCTCCTGACCGAGAGGCTGCTGCAGACGTGCGTGA
GCGAAGCCCAGGTGATGAAGGGCTTGGTGCCCACGCACGCGGCCCTTGTG
GGGGGCGTGCACATGGCCGGAGGGGCCGGGGGAGGGGAGTTGGGGGCGCA
TGTGCTGGAGCGAGTCTGTCAGGAGTACCACACGGCGCGGAAGCGGCTGC
TGGCGATAGGGGAGGGGGAGGGAGGGGAGGACGAGGAGGAGAGGGAGGCT
ATCGAGGCGGGCCTGGCCCGCCGCCTGGACAACCTGGTCCTCATTCTTGC
CTACCTGTACTCCTTCGGGGTGGTGGCTTGCCCCCTCGTCTACGGCTTGA
TCCGTGAGCTGGTGGCCCCCCTGGGAGAGAGGGACGTGGAGCTCCTCCTC
CTGCTCCTGCGCACGGCCGGGCCTCAGCTGAGGGCGGACGACCCGCGGGC
GCTCAAGGACATCGTGCTGGCGGTGCAGGAGCGCGCGGCCTCGGTGGGGG
CCGGAGAGGGGGACGTCAACGCCCGGGTCCGGCACATGCTCGAGACCCTG
AACGACTTGAAGAACAACAAGCGCCGACAGGCCCAGCTCCAGGAAGGGGA
ACGCACGCAGCGTCTTCGCAAGCTGGTGCTCCGGGCGAGGAGCGGCGGGA
TGGTCGGCAAAGGCCAGGGCGGGGGAGGGGGCGGGGAGACCCTGCACGTC
TCTTGGGAGGACATGCGCGACTCGGCCTCCCGCGGCCGGTGGTGGCGCGT
GGGAGCCGCCTGGGCGGGGAAGGAGGCGGAGAGGGGCGAGGGGGGGCAGC
CGGGTGTCGCAGGCCGGGGCCAAGGGTTTCCGATGGCCGCCGCGAGTCCC
GTGAGCTCGAGCCTGCAGGAGAAGATCAACTCCTTGGCGTCGAGGCAGCG
CATGAACACGGACGTGAGACGGGCGATTTTTGCGAGCGTCATGACCGCCT
GCGACTACCAGGACGCCTTCGAACGCCTGATGCGCCTGAACTTGAGCGAC
AAGCAGGAACGGGAGGTGGTGCGGGTCATCGTGGATTGTCTGGGGCAGGA
GCGGGCCTACAATCCGTACTACGCGTACTTGCTAGGACGACTGTGCGAGT
ACCACGATAAATACAAATTCACCCTCCAGCTCACCTATTGGGACATTTTT
AAGGTATTGGACCAGGAGAATGCTGGCTTTGGAGCGGACGACGGGGAGGG
TCGGAGCACTCCGGGCGGGGAGAAGGTAGAGAGAAGGGCGGCAGGGGGCC
ACAAGGCCGTGAACCTTGCCAGGGCTCTCAGCCACCTGATCGCGAAGGGC
TGGCTCTCTCTGGCGGTGTTGAAGGTGGTGGACGTGGCGAGTGTCGGGGC
TGTGGCTGCGTCCTTTTTTCGTGTCTTTTGGGCCGATTTTCTGGACGAGA
GAAAGCAGCCGGACCAAGAGGTCCTGAGGGCGGTGCGGCGGGTGGCCGTG
TCGAAGGAGCCTTTCAGCCTGACCGAGACACTGACGGCCTGTCTGCACCG
GTTCGCCCTGGGTGAGAACTGGATCGGGGACACGGAGGAGAGGAAGAGGC
ACAAGAAGCGGGCCAAGTCTTTGGTGAGACTGCTGGAGAAGCTCTCAGTG
AGCCAGTTCATGGGAGAAGGGGACGTGGAGAGGGTGCGACGGGAGGGAGA
AGGTGGGTGGGGGACTGTGTAGGATCGTTAGAATGTAGATGCGCGTGAGA
GAGGTTAGCCTCAGGCGCACATGTGAGCAGTGCATGGTGTGAAGCACCAC
GGGAATTCTGTCACGATGAAACTGCCAGCGTAGCGCGGGAGTCACAGGCA
GCTAGGGAGGATGACAAAGGAGATTGCTTAGGACATACAGGAGTAATGTG
ACCTTGTAAAGGGGTCAAAATTTACATAAATCACATCTTATGATGT

Coding sequence (CDS) from alignment at CM002456.1:1005505..1007900-

>rna1033 ID=rna1033|Name=rna1033|organism=Nannochloropsis gaditana|type=CDS|length=2172bp|location=Sequence derived from alignment at CM002456.1:1005505..1007900- (Nannochloropsis gaditana)
ATGCCAGATTTCTGGAGCAGCGAGGAGGAGGAGGAGGAGGACGACGAGGA
GGTGGAGGAGGAAGAAGAGGAGGAAGAAGAGGAAAATGAGGAGGAAGAAG
AGGAGGAAGAGGAGGAGGAAGAAGAGGAGGAGGGAGGTGAAGAAGATGAT
GATGAGCATGCCGCCGGCTCCTGCTCCTCCGCCTCCGCCCCCCTCGAGCC
CTCCCCTGAGAGCCGGGAAGTGGTCGCCCACGCCTATCGCCCGGTGCGGG
GGGAGGACATCTACGGGCGGCCCCTTGAGGCCCCGGCAGGGACCGACGCC
CCGGGCAAGTACCTTCCCCCGCACTTGCGGTCCGGGCGGAGGACGGGGGA
GGGACAAGGAGGGGAGGATCCCGAGGACACCACGAGCGCCGAGTTTTTGC
TCCTTCGTCGCACCTTGAACGGGCTCGCGAACCGGGTTTCGGAGGCGAAC
CTGGAGACGAGCATCCGAGACGTCAGCGCCCTCTATGCACGGCACCCGCG
GAGGCGCATGCACGCGCTCCTGACCGAGAGGCTGCTGCAGACGTGCGTGA
GCGAAGCCCAGGTGATGAAGGGCTTGGTGCCCACGCACGCGGCCCTTGTG
GGGGGCGTGCACATGGCCGGAGGGGCCGGGGGAGGGGAGTTGGGGGCGCA
TGTGCTGGAGCGAGTCTGTCAGGAGTACCACACGGCGCGGAAGCGGCTGC
TGGCGATAGGGGAGGGGGAGGGAGGGGAGGACGAGGAGGAGAGGGAGGCT
ATCGAGGCGGGCCTGGCCCGCCGCCTGGACAACCTGGTCCTCATTCTTGC
CTACCTGTACTCCTTCGGGGTGGTGGCTTGCCCCCTCGTCTACGGCTTGA
TCCGTGAGCTGGTGGCCCCCCTGGGAGAGAGGGACGTGGAGCTCCTCCTC
CTGCTCCTGCGCACGGCCGGGCCTCAGCTGAGGGCGGACGACCCGCGGGC
GCTCAAGGACATCGTGCTGGCGGTGCAGGAGCGCGCGGCCTCGGTGGGGG
CCGGAGAGGGGGACGTCAACGCCCGGGTCCGGCACATGCTCGAGACCCTG
AACGACTTGAAGAACAACAAGCGCCGACAGGCCCAGCTCCAGGAAGGGGA
ACGCACGCAGCGTCTTCGCAAGCTGGTGCTCCGGGCGAGGAGCGGCGGGA
TGGTCGGCAAAGGCCAGGGCGGGGGAGGGGGCGGGGAGACCCTGCACGTC
TCTTGGGAGGACATGCGCGACTCGGCCTCCCGCGGCCGGTGGTGGCGCGT
GGGAGCCGCCTGGGCGGGGAAGGAGGCGGAGAGGGGCGAGGGGGGGCAGC
CGGGTGTCGCAGGCCGGGGCCAAGGGTTTCCGATGGCCGCCGCGAGTCCC
GTGAGCTCGAGCCTGCAGGAGAAGATCAACTCCTTGGCGTCGAGGCAGCG
CATGAACACGGACGTGAGACGGGCGATTTTTGCGAGCGTCATGACCGCCT
GCGACTACCAGGACGCCTTCGAACGCCTGATGCGCCTGAACTTGAGCGAC
AAGCAGGAACGGGAGGTGGTGCGGGTCATCGTGGATTGTCTGGGGCAGGA
GCGGGCCTACAATCCGTACTACGCGTACTTGCTAGGACGACTGTGCGAGT
ACCACGATAAATACAAATTCACCCTCCAGCTCACCTATTGGGACATTTTT
AAGGTATTGGACCAGGAGAATGCTGGCTTTGGAGCGGACGACGGGGAGGG
TCGGAGCACTCCGGGCGGGGAGAAGGTAGAGAGAAGGGCGGCAGGGGGCC
ACAAGGCCGTGAACCTTGCCAGGGCTCTCAGCCACCTGATCGCGAAGGGC
TGGCTCTCTCTGGCGGTGTTGAAGGTGGTGGACGTGGCGAGTGTCGGGGC
TGTGGCTGCGTCCTTTTTTCGTGTCTTTTGGGCCGATTTTCTGGACGAGA
GAAAGCAGCCGGACCAAGAGGTCCTGAGGGCGGTGCGGCGGGTGGCCGTG
TCGAAGGAGCCTTTCAGCCTGACCGAGACACTGACGGCCTGTCTGCACCG
GTTCGCCCTGGGTGAGAACTGGATCGGGGACACGGAGGAGAGGAAGAGGC
ACAAGAAGCGGGCCAAGTCTTTGGTGAGACTGCTGGAGAAGCTCTCAGTG
AGCCAGTTCATGGGAGAAGGGGACGTGGAGAGGGTGCGACGGGAGGGAGA
AGGTGGGTGGGGGACTGTGTAG

Synonyms

Publications