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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100050g31.6873.mrna |
| Orig protein id | gnl|cribi|Naga_100050g31.6873 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:1000920..1003006 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1030 ID=rna1030|Name=rna1030|organism=Nannochloropsis gaditana|type=mRNA|length=1650bp
CAATCGTCCGAGGATAGAAAGCCGCAAGCTTCGGGCATGCGCAAGAAAGG
TCAGACGAGGGGCGAGGACGCGTCGGAGAACGACGAGGCGCAGGCGCTGG
CCGAGATCATGATGCCGCGAAAGCACCGGCGGGCCTACCAAGTCGCCCGC
CGGGGGGAGGCCAAGCAGAAGGAGAAGGTGGAGGCACTGGTGACCAAGCG
ACGCAAGCTGGAAGAGGCCGCGGGTGTGGCTGCTCCCCGTTATGCGACGA
GCAAGCGAAGGGCTGGGGCGAGGGGGACGACTGCGGTAGGAAAGGGTGGG
AGGGGGGCGAAGACGGGGGCGCGGGTCTCCACCAGGTAGACGCGGAGCGA
CCCGACGCCGAGAGCCCCACGTAGATGGGGAGTGGGCCGTGTTATGCGAG
ACTTCTCCGACTGGGACGTTGTGAGAGAGGGGCTAGCAAAACCTTGACGA
AGCTCCAAATAGAAATGTAAGTAAAGTATTACCCTACGAGCGCGGTTACC
AGCTTGAACAGTACTCAAGATGTTTGTTTTCACTTAGGTTACCTAGTGAG
GCGTTGAAGTGTGTCGTGTTATGTTGGCTGCGAAGACAACGATCTGACAA
GGTGCCCATCTCTGCAGTAAATAGTATTGCTCGTGCTTACGCGGAAGGCG
GAATGGCGCGGACATACGAAATTTATATGCGCATTGGCACTCAGGGCAAG
AAAATTAAAAAATAAAAAGATCGCGTGTACGAGGCTTCACATGAAAGGGG
GGACTGAAAAGTCCCTTGAATTTGATTGGATGTGACTCGAGCATGTCAGC
GCTCATGAACTTAAGCTGATGCTTAACCACCGAAGCCGTACAGAGTGCGG
CCCTGTCGCTTCAGAGCGTACACGACATCAAGAGCCGTGACGGTCTTGCG
GCGGGCGTGCTCAGTGTAGGTGACGGAATCACGGATGACGTTCTCCAGGA
AGACCTTGAGCACACCGCGGGTCTCCTCGTAGATGAGGCCCGAGATACGC
TTGACACCACCTCGGCGGGCCAAACGACGGATGGCGGGCTTGGTAATGCC
CTGGATGTTGTCACGCAACACCTTGCGGTGGCGCTTAGCGCCGCCTTTGC
CGAGGCCCTTGCCGCCCTTGCCGCGTCCAGACATGATTTGAGAGTTTGGG
TGTGTTGAACTGCCAAGATAGGAATATAAGACAATGAATGAGATTTTCAT
TAGACAAGATGTGTGAAGTCCCTCAAAAAGGATTTGAGACACCGTGCAAG
AGCGATTGTGTGTATGCACGGGCGCATGAGTGCTTTTATGTCGTACGATA
TGGGAACACGAGAAGTCGAGGGTTGGGCGGGAAGGGGGATGAGGGACTCA
CGAGACATATCGACCAGTGAGAACGACAGAAACGCACTTGCGATTTCTGA
TAGACAATTGATCTATCGAGGAAGAAAACTCTTTTTCTCTTTGTGGCCAT
GAGAAACAGTAGGATGCCTAAGATGGAAGCACAATCACGCAGACGCGGAG
TGGAAAGGGCACGACGGACGTGACTTTTGATTTGGCGAGGGTGTGGGGGA
GCAAAAGGAATAAAATGCACCAAGAACCGTTTAATTTCAAATACACATGA
GTGACGCCATTCCTAAAAACAACTAGACAGTCGTGTAGCCGCAAAAAACT back to topprotein sequence of rna1030 >rna1030-protein ID=rna1030-protein|Name=rna1030|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MRKKGQTRGEDASENDEAQALAEIMMPRKHRRAYQVARRGEAKQKEKVEA
LVTKRRKLEEAAGVAAPRYATSKRRAGARGTTAVGKGGRGAKTGARVSTR back to topmRNA from alignment at CM002456.1:1000920..1003006+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1030 ID=rna1030|Name=rna1030|organism=Nannochloropsis gaditana|type=mRNA|length=2087bp|location=Sequence derived from alignment at CM002456.1:1000920..1003006+ (Nannochloropsis gaditana)
TTGCGTTTGAGCGGAGGATCCATTCatctgggggggggggggaagggcac
cACTCCAAAGGGGGAAGGCATGTCAGGCACGTTCCCTCACCCGCCCCGTC
GGCGCCGCGAGGCGTCAGGGGGACACCCGGGGGTGGTTTCGGTCGATGCG
TGCATTCTGTTGACAGTTGGGTGGGAGAGAAATGGGTCCCTTGAAGGGGC
TCGGGACGGGTGCCTACGGTTTGCTCGCCTCGGCGATCGCGGGCACGGCG
AGTGATTAACAAGCGCCGTCCACATGTTGAGATTGTCGACCTCACTCGTG
GCGAGGCGGCCACGGATTTGccgcgggaagggaggaggagaagggatggg
aggtTGCAGCGGTGTGCGCGCGTCAGCTGAGCATGTCTGGTGCAtgtccc
cttttcccctcccgacTGACATGAGACTATCCTTCTTGTTCTCTACGTCC
TCCCACAGCCGCAAGCTTCGGGCATGCGCAAGAAAGGTCAGAcgaggggc
gaggacgcgTCGGAGAACGACGAGGCGCAGGCGCTGGCCGAGATCATGAT
GCCGCGAAAGCACCGGCGGGCCTACCAAGTCGCCCgccggggggaggcca
agcagaaggagaaggtggaggcactGGTGACCAAGCGACGCAAGCTGGAA
GAGGCCGCGGGTGTGGCTGCTCCCCGTTATGCGACGAGCAAGCGAAGGGC
tggggcgagggggacgaCTGCGgtaggaaagggtgggaggggggcgaaga
cGGGGGCGCGGGTCTCCACCAGGTAGACGCGGAGCGACCCGACGCCGAGA
GCCCCACGTAGATGGGGAGTGGGCCGTGTTATGCGAGACTTCTCCGACTG
GGACGTTGTGAGAGAGGGGCTAGCAAAACCTTGACGAAGCTCCAAATAGA
AATGTAAGTAAAGTATTACCCTACGAGCGCGGTTACCAGCTTGAACAGTA
CTCAAGATGTTTGTTTTCACTTAGGTTACCTAGTGAGGCGTTGAAGTGTG
TCGTGTTATGTTGGCTGCGAAGACAACGATCTGACAAGGTGCCCATCTCT
GCAGTAAATAGTATTGCTCGTGCTTACGCGGAAGGCGGAATGGCGCGGAC
ATACGAAATTTATATGCGCATTGGCACTCAGGGCAAGAAAattaaaaaat
aaaaagatcGCGTGTACGAGGCTTCACATGAAAGGGGGGACTGAAAAGTC
CCTTGAATTTGATTGGATGTGACTCGAGCATGTCAGCGCTCATGAACTTA
AGCTGATGCTTAACCACCGAAGCCGTACAGAGTGCGGCCCTGTCGCTTCA
GAGCGTACACGACATCAAGAGCCGTGACGGTCTTGCGGCGGGCGTGCTCA
GTGTAGGTGACGGAATCACGGATGACGTTCTCCAGGAAGACCTTGAGCAC
ACCGCGGGTCTCCTCGTAGATGAGGCCCGAGATACGCTTGACACCACCTC
GGCGGGCCAAACGACGGATGGCGGGCTTGGTAATGCCCTGGATGTTGTCA
CGCAACACCTTGCGGTGGCGCTTAGCGCCGCCTTTGCCGAggcccttgcc
gcccttgccgcGTCCAGACATGATTTGAGAGTTTGGGTGTGTTGAACTGC
CAAGATAGGAATATAAGACAATGAATGAGATTTTCATTAGACAAGATGTG
TGAAGTCCCTCAAAAAGGATTTGAGACACCGTGCAAGAGCGATTGTGTGT
ATGCACGGGCGCATGAGTGCTTTTATGTCGTACGATATGGGAACACGAGA
AGTCGAGGgttgggcgggaagggggatgagggactCACGAGACATATCGA
CCAGTGAGAACGACAGAAACGCACTTGCGATTTCTGATAGACAATTGATC
TatcgaggaagaaaactCTTTTTCTCTTTGTGGCCATGAGAAACAGTAGG
ATGCCTAAGATGGAAGCACAATCACGCAGACGCGGAGTGGAAAGGGCACG
ACGGACGTGACTTTTGATTTGGCGAGGGTGTGGGGGAGCAAAAGGAATAA
AATGCACCAAGAACCGTTTAATTTCAAATACACATGAGTGACGCCATTCC
TAAAAACAACTAGACAGTCGTGTAGCCGCAAAAAACT back to topCoding sequence (CDS) from alignment at CM002456.1:1000920..1003006+ >rna1030 ID=rna1030|Name=rna1030|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at CM002456.1:1000920..1003006+ (Nannochloropsis gaditana)
ATGCGCAAGAAAGGTCAGAcgaggggcgaggacgcgTCGGAGAACGACGA
GGCGCAGGCGCTGGCCGAGATCATGATGCCGCGAAAGCACCGGCGGGCCT
ACCAAGTCGCCCgccggggggaggccaagcagaaggagaaggtggaggca
ctGGTGACCAAGCGACGCAAGCTGGAAGAGGCCGCGGGTGTGGCTGCTCC
CCGTTATGCGACGAGCAAGCGAAGGGCtggggcgagggggacgaCTGCGg
taggaaagggtgggaggggggcgaagacGGGGGCGCGGGTCTCCACCAGG
TAG back to top
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