rna103, rna103 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna103
Unique Name	rna103
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2732
Alignment location	CM002455.1:279769..282026 -

Link to JBrowse

Properties


Property Name	Value
Product	Protein phosphatase 2C, manganese/magnesium aspartate binding site
Orig transcript id	gnl\|cribi\|Naga_100033g27.8430.mrna
Orig protein id	gnl\|cribi\|Naga_100033g27.8430
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:279769..282026 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100033g27	gene100	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30591.1	cds103	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna103	rna103-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:279769..282026-
coding sequence from alignment at CM002455.1:279769..282026-

mRNA sequence

>rna103 ID=rna103|Name=rna103|organism=Nannochloropsis gaditana|type=mRNA|length=2732bp
ATTTGACAGGTGACTGCACAGTGGCTGCAATTTGGAGGGCTTGGTATTGC
GTGGGAGCTGGTAAAGCAGATTTGTCGTCTTCACCGTCACGCACAGTACC
TGGAGGAAGCCCGTACATCAATTGTTCGGCTCCCGAAATAGCTTTTCTGA
AGGCTACGGCCTTTGTCAGATAGCATGCCCACCCCGTCCCGATTCCAAGG
CACACCAAGCCGCCTTGCGTCCTCTTCCTCCAACGTGAGCACGGTCAGCA
CGCCGCGCACCCCGAATGTGACCACACCGTCCAGACGTACTACTCTCTCC
TCCGTCTCCGGCGCCCGTCAGCAACAGCATGTATCCACCCTCACTGGTGG
CAGCAGCGCTGGTAAGCGTGATACATGTTTGGAAGAAATCCAGCGTTTGC
AGCAAAAACGCACCGAACGCCGCAGGTCCATGGAGGAAAAGCGTGCGGAA
CGGGCCAAGCACGAGAAACGCCTTCAAGACCAAGGGATGCCAGGGGATGT
CGATTTTCAATTGATGATAGGCGCCTTTCGGACGGAGTATGGTTTGGAGC
CACACCCTCACATCCCACCAGGGGACCTGAAGATATGCATTTGCGTGCGA
AAGCGGCCCATAAACGCCAAGGAGCGGAAGCGGAAGGACTACGACGCGGT
CACGTGCTTCAACCCCGTGGTGATGGTGCACGACTGCCGTCTCCGCGTGG
ACGGAATCACCAAGTACCTGGACAACACGGATTTCGCCTTCGACCACACC
TTCGACGAGGAGGACTCCACCGAGGCCCTCTACCGTTACACGGCGAAGCC
TCTCGTTCCCTTCGTTTTCCGACAGGGGCGGGCCACCTGCTTCGCCTACG
GCCAGACGGGCTCGGGAAAGACCTTCACCATGTGCGGCATCCAACAGCAG
GTGGTGGTGGATGTGTTCGCCCACCTGAGCCAGGCGCACGCAACGCAGCA
GGCGCCGGGGGGGTTGGGCGTCTATGTGAGCTACTTCGAGATCTACGGCG
GGCGGTGTCAGGACCTGCTCAACCACCGGCACAAGCTGCTGGTGCGGGAG
GACGGGAAGGGAGACGTGGTGATCGGAGAGCTGAGCGAAAAAGAGGCCAG
CTCGGAGGAGGAGTTATGGCGCCTGATCGAGGAAGGGAACCGGAACCGGA
CCACCCACGCGACCGAGGTGAACGATGTCTCCTCCCGCTCCCACGCCATA
TGCCAAGTCCTCCTCCGGGACCAAGATTCGGGGAAGCTGTGGGGGAAACT
CTCCCTGGTCGACTTGGCCGGCTCGGAACGGGGGGCGGACACGAAGAGCC
ACTGCCGGCAGCGGCGCTTGGAAAGTGCGGAGATCAACAAATCGCTGTTG
GCGCTCAAAGAGTGCATCCGGGCATTGGATGCGGGCGGCGGCACCCACGT
TCCTTACCGCGCGAGCAAGCTTACGTTGGTCTTGAAGGATTGCTTCACGA
AGGAAAAAGCACGCACCGTCATGATCGCCACCGTGTCCCCCAACGCCTCC
TCCGCCGATCATACCCTCAACACCCTCCGGTACGCAGACAGGGTCAAGCA
GAAAAAGGCGGAAGACTTTCACAACAGCGGGAGTGGGAGCAGTGTGGGCA
AAGGACTACGGACAGAGGGCTGCGGGGAAGGGCGGGCGGTGCGAGGGACG
GGTCTTGGGGGTGACTTTGAAGACGAGGAAAGGGAGGGGCGCGGGGGCGA
GGAAGGTGCCTCGGGGGACCGGGAGGACGAATTCGAGGACGAGGGGGAGG
ACGGGATGGAAGGCACCGAGCAGTCCTCGCCCGAGACCCCCATGAAGAGG
GCGGTCCTGGCTTCCTTTTCCTCCCCTCCCGCCACGGCCTCCCCCTTGCC
CCCCTCCTCCTCCTCCAAGCTTCGTCGGACGCCCCTCAGGACAGGCATGG
GCCCGCCCGTCCGCCTCGCCCCCAGCACGGCCTTGAAAGCGGCCCGGGGC
GCACACCACGGGGGCGTGGAAGGCTCCCACACCACGAGCCACCACGGCTC
TAGCCTCAGCTCAGGCAACACCGTCGCTGTGGCGCCGGTGTCGGCCACCG
AGAGAACTCCAGGGCGTCTTTCCCAGCCCCATCAGCCCGGAGACACAGGA
AGGGGGCTCCAAAATGCAAATATCAGCTCCCGGGAGGTGTTGCCACCCCC
GGGAGGCGAAAGGGACAAAGACAAGGCACCAGTTTCGCGTAAAATTCCCT
CCCAAGGCGACGATTCCTCGGGCGGAGAGGCCAGCCAGGCGGAGGCGGAA
AGCCTGGACGACCCGGACTTGGAGAGCCTCTACGACGAGGAGGACGCCCT
CTTGAATCTGCACATGAACGTGATCCAAGAGAACGCGGAGCTTCTGACGG
AGGAAGGAAGCTTGCTGCAGCAGATACAGGGCGATGGCGTCCAGGACTAC
GATCTCGACACGTACACGCAACGGCTGGAGGAAATTTTGGCGCGAAAGAT
GGATTTGATCGGGGATCTGAGGGAAAAAGTGGGGGAATTCCGGGCCCGTT
TACAGCAGGAAGAAAATGCTGGGAGGGTGAGGGGCGAAGGGATGGAGGGC
TAGTGAATAGGGGGTCACAGTGAGCGAGCGGTGAGACTGTAGTAACAATA
GCGAATCATAGCGAAGACGGAGCGCACACGCGCATCGTCCCTTTGGACCT
GGCGAACGGATGCACACGGTCGTCCTCGCGGGGCAGGGAAAGAGTAAAAA
CAACGGGTTTGACGCCCACATTGTCGTGTGCT

protein sequence of rna103

>rna103-protein ID=rna103-protein|Name=rna103|organism=Nannochloropsis gaditana|type=polypeptide|length=517bp
MTARHLTRHNRHQQLSNALTLRIVGLTCTANRRRNAPSIVPGFPFPPSQS
PYLGMHFYYNGLAGAGSYRRSIFTTAAALASAYYMGGLARGSASASCEAP
LPPPPPPSSSSFSSSPSSSSSTDGQDSQPRFIKFPLRRDSDGTAGRGATS
VTSIYPGKGHSIRRSSSSTSSPTGSSKASGGAGGPYTTSVVAFKGQRSYM
EDDFFISKDGSFAGVYDGHGGAAVSKYLRQNLNAQFLAALPDADMRRLGQ
EKVTEALATAFRVVDEAVVKVRHWAYMGSTAVVVVIHAEEAKAKEGVEEG
GRAGALKRTLIAANVGDSRAVLSRRGQAVDLTDDHKPNKPSELERVKALG
GTVRWYGLLEQDGSPMEGMGVYRINGNLAVARAFGDRSERPFVSSEAEIK
QLAVEEGDEFVILATDGLWDVMSSEEAVNFVHSVMSASVGALTEGVGDGV
GGAGAEGVAGQRPADMKIFDWTKQHADDRGIIRAAMMARKKKMARYLSEE
AFRRGTSDNVTVVVVWF

mRNA from alignment at CM002455.1:279769..282026-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna103 ID=rna103|Name=rna103|organism=Nannochloropsis gaditana|type=mRNA|length=2258bp|location=Sequence derived from alignment at CM002455.1:279769..282026- (Nannochloropsis gaditana)
CATCTGGCCGGTTTCCTAACTACTCGACACTTGTCACAGGACGGGAACCC
CACCACTTCACGCTTTGACGCAGGTTGTGAAGTACCCTGGAGCCTGCCCT
CCGAGATAGCCTCCTCCCTGCCCCCTCTGTAGCTGCCCGAGGCCCTACGT
TTTGAGAGTGAGACCGAGCAAACTGACGAAGCCTTTGACAGTCATCATCA
GTGTGCTGATAATAGGTTTCTGTGCGCTTCTCGTCCGGCTGAAGATTTCA
TTGTTGCATAAGCCGCACACGTCCGCTCTTAGCAGCCAAAACTTAGATTG
GGGGCCCGGGGCTTAATGACAGCCCGGCATCTGACGAGGCATAACCGTCA
CCAGCAGCTCAGCAACGCCCTTACTCTTAGGATCGTGGGTTTAACTTGCA
CAGCGAACCGGAGGAGGAACGCGCCGTCGATTGTGCCTGGGTTCCCTTTC
CCTCCTTCTCAGTCTCCCTACCTTGGCATGCACTTTTATTACAATGGCCT
TGCCGGGGCAGGCTCGTACCGACGCTCGATATTCACCACTGCGGCCGCCT
TAGCGTCCGCATATTACATGGGAGGTCTAGCCCGTGGGTCCGCATCAGCG
TCGTGTGAGGCACCATTACCTCCTCCCCCCCCTCCTTCCTCCTCCTCCTT
CTCCTCCTCGCCTTCCTCCTCTTCGTCCACCGATGGCCAAGACTCTCAGC
CCCGTTTCATAAAATTCCCCTTACGGCGTGATTCCGACGGCACGGCTGGA
AGGGGGGCTACTTCTGTCACCTCGATCTACCCAGGCAAAGGCCACAGCAT
ACGGCGCTCTTCGTCTTCCACCTCCTCCCCTACCGGCTCCTCCAAGGCCA
GCGGCGGCGCTGGCGGGCCCTACACCACGTCCGTCGTCGCTTTCAAAGGA
CAGAGGTCCTACATGGAGGACGATTTTTTTATTTCCAAGGACGGGTCTTT
CGCTGGCGTCTACGATGGGCATGGGGGAGCAGCTGTTTCGAAATACCTCC
GACAGAATCTGAACGCTCAATTCTTGGCGGCATTGCCGGACGCGGACATG
CGAAGGCTTGGACAGGAAAAGGTGACGGAGGCGTTGGCGACGGCCTTCCG
GGTGGTGGACGAGGCAGTGGTCAAGGTCCGGCACTGGGCCTATATGGGGT
CGACGGCTGTGGTGGTGGTGATTCACGCGGAGGAGGCCAAGGCAAAGGAG
GGGGTGGAGGAGGGCGGGCGGGCGGGCGCCTTGAAACGTACGTTGATCGC
GGCCAACGTAGGGGACTCGCGTGCCGTCCTGAGCCGTCGGGGCCAGGCTG
TGGACCTCACCGACGACCACAAACCTAACAAGCCCAGCGAGCTGGAGCGC
GTCAAGGCGCTGGGCGGGACGGTGCGATGGTACGGCTTGTTGGAACAGGA
CGGGTCTCCCATGGAGGGCATGGGCGTGTACCGGATCAACGGGAATCTGG
CCGTGGCTCGTGCCTTTGGGGACAGGAGCGAGCGCCCTTTTGTCTCGAGC
GAGGCGGAGATCAAGCAGCTGGCGGTGGAGGAGGGGGACGAGTTCGTCAT
TTTGGCCACGGACGGGCTGTGGGACGTGATGAGTTCGGAGGAAGCGGTGA
ATTTCGTCCACTCGGTGATGAGTGCCAGTGTCGGGGCCTTGACGGAAGGC
GTGGGCGACGGGGTGGGAGGGGCCGGGGCGGAAGGGGTTGCGGGGCAACG
GCCTGCGGACATGAAAATCTTCGACTGGACGAAACAGCACGCCGACGACA
GGGGAATCATCCGGGCGGCCATGATGGCGCGCAAGAAGAAAATGGCCCGG
TATTTGAGTGAGGAGGCGTTTCGGCGGGGCACCTCCGACAACGTGACTGT
GGTAGTCGTCTGGTTCTGAGTCCGGGTCAGTGGTGTGCCGCCACGATCAG
GGAGGTGACCTGGTAGTGGGTAGGAGTTCAGGTGGCACGCGCGCACCGGG
CAGATAAATGGCGGTGTGCCAAGTGCGTTGCGATGAGGAAAGGGGAGGTA
GCTGAGGATATCCACGAGGGCTGCGGGGCGGGGCAGTTCGGGGGAGGGGG
AGGGAGGGAGGGAGGGAGGAAGGGTATGGGCGCGACTGTGAAAGGCATAG
CGAACGGCAAGGCCCACGGTGAGGGCGTTTTATCTGCCGTCGGGGTCCGT
TGAGAGAGCGGATATTGGTTGGCGTGGGGATCGGTGGTACAGAAGGAAAG
CAAATAGGGGTGAGGGTAGCACAGGTCTCGCGGCGCCTGCCCCTGTTCTG
TGATGAGC

Coding sequence (CDS) from alignment at CM002455.1:279769..282026-

>rna103 ID=rna103|Name=rna103|organism=Nannochloropsis gaditana|type=CDS|length=1554bp|location=Sequence derived from alignment at CM002455.1:279769..282026- (Nannochloropsis gaditana)
ATGACAGCCCGGCATCTGACGAGGCATAACCGTCACCAGCAGCTCAGCAA
CGCCCTTACTCTTAGGATCGTGGGTTTAACTTGCACAGCGAACCGGAGGA
GGAACGCGCCGTCGATTGTGCCTGGGTTCCCTTTCCCTCCTTCTCAGTCT
CCCTACCTTGGCATGCACTTTTATTACAATGGCCTTGCCGGGGCAGGCTC
GTACCGACGCTCGATATTCACCACTGCGGCCGCCTTAGCGTCCGCATATT
ACATGGGAGGTCTAGCCCGTGGGTCCGCATCAGCGTCGTGTGAGGCACCA
TTACCTCCTCCCCCCCCTCCTTCCTCCTCCTCCTTCTCCTCCTCGCCTTC
CTCCTCTTCGTCCACCGATGGCCAAGACTCTCAGCCCCGTTTCATAAAAT
TCCCCTTACGGCGTGATTCCGACGGCACGGCTGGAAGGGGGGCTACTTCT
GTCACCTCGATCTACCCAGGCAAAGGCCACAGCATACGGCGCTCTTCGTC
TTCCACCTCCTCCCCTACCGGCTCCTCCAAGGCCAGCGGCGGCGCTGGCG
GGCCCTACACCACGTCCGTCGTCGCTTTCAAAGGACAGAGGTCCTACATG
GAGGACGATTTTTTTATTTCCAAGGACGGGTCTTTCGCTGGCGTCTACGA
TGGGCATGGGGGAGCAGCTGTTTCGAAATACCTCCGACAGAATCTGAACG
CTCAATTCTTGGCGGCATTGCCGGACGCGGACATGCGAAGGCTTGGACAG
GAAAAGGTGACGGAGGCGTTGGCGACGGCCTTCCGGGTGGTGGACGAGGC
AGTGGTCAAGGTCCGGCACTGGGCCTATATGGGGTCGACGGCTGTGGTGG
TGGTGATTCACGCGGAGGAGGCCAAGGCAAAGGAGGGGGTGGAGGAGGGC
GGGCGGGCGGGCGCCTTGAAACGTACGTTGATCGCGGCCAACGTAGGGGA
CTCGCGTGCCGTCCTGAGCCGTCGGGGCCAGGCTGTGGACCTCACCGACG
ACCACAAACCTAACAAGCCCAGCGAGCTGGAGCGCGTCAAGGCGCTGGGC
GGGACGGTGCGATGGTACGGCTTGTTGGAACAGGACGGGTCTCCCATGGA
GGGCATGGGCGTGTACCGGATCAACGGGAATCTGGCCGTGGCTCGTGCCT
TTGGGGACAGGAGCGAGCGCCCTTTTGTCTCGAGCGAGGCGGAGATCAAG
CAGCTGGCGGTGGAGGAGGGGGACGAGTTCGTCATTTTGGCCACGGACGG
GCTGTGGGACGTGATGAGTTCGGAGGAAGCGGTGAATTTCGTCCACTCGG
TGATGAGTGCCAGTGTCGGGGCCTTGACGGAAGGCGTGGGCGACGGGGTG
GGAGGGGCCGGGGCGGAAGGGGTTGCGGGGCAACGGCCTGCGGACATGAA
AATCTTCGACTGGACGAAACAGCACGCCGACGACAGGGGAATCATCCGGG
CGGCCATGATGGCGCGCAAGAAGAAAATGGCCCGGTATTTGAGTGAGGAG
GCGTTTCGGCGGGGCACCTCCGACAACGTGACTGTGGTAGTCGTCTGGTT
CTGA

Synonyms

Publications