rna10294, rna10294 (mRNA) Nannochloropsis gaditana

Overview
Namerna10294
Unique Namerna10294
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length204
Alignment locationKK037270.1:19112..19588 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101362g2.1222.mrna
Orig protein idgnl|cribi|Naga_101362g2.1222
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037270.1supercontigKK037270.1:19112..19588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101362g2gene9995Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10294rna10294-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20411.1cds10263Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10294 ID=rna10294|Name=rna10294|organism=Nannochloropsis gaditana|type=mRNA|length=204bp
ATGCGCCCGGAACGAGCGTCCAGCCGCCCTTACAAGGCACTCCTGTCTCA
GGCCATACATCCGGGTATGCCCCCTCCGGCACTCACGGGCATGCCTATTC
GTACCAGCAGCAACAGCCAGGTCACTCGCAGCACCCGCGACCCACAGGCA
CTTACTCGACCGGATATGGGCCGGGGCATACAAGCAACGTGCCGGCGCAC
GTAA
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protein sequence of rna10294

>rna10294-protein ID=rna10294-protein|Name=rna10294|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MVFAGVWPLSTVGTTPAARDSPASNTRHETDVSVQASDSTPSSSFPSVAA
DGSTPNHVTHHPALSDMVAPLAPEALLDAVNEGSVSLVNSLLSQEPSLAN
HRDGFGQVSGCVREDK
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mRNA from alignment at KK037270.1:19112..19588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10294 ID=rna10294|Name=rna10294|organism=Nannochloropsis gaditana|type=mRNA|length=477bp|location=Sequence derived from alignment at KK037270.1:19112..19588+ (Nannochloropsis gaditana)
GGCTTTTCGCGTTTTCATCACGCGTTGAAATTTTGGTTGACATTCTGACC
GAATCCTAAAACATTACAACATTAAAGGGTGGTTTCCCCTGTACAGAGGG
TCCAAAGATAGAAGATGGTATTTGCGGGTGTGTGGCCTTTGTCGACTGTT
GGCACAACTCCTGCAGCACGGGACTCTCCTGCGAGCAACACACGCCATGA
GACAGATGTATCTGTGCAAGCCTCGGATTCAacgccatcttcttctttcc
ctagCGTGGCCGCGGATGGCAGCACTCCGAACCATGTGACTCATCACCCT
GCCCTCAGTGACATGGTGGCCCCCTTGGCGCCAGAGGCCTTACTGGACGC
GGTCAACGAAGGAAGCGTCAGTCTCGTGAATTCTCTGTTGTCGCAGGAGC
CCTCCCTGGCCAATCACAGGGATGGCTTCGGTCAGGTGAGTGGTTGTGTG
AGAGAGGACAAATGAGGCAGGTCGGGA
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Coding sequence (CDS) from alignment at KK037270.1:19112..19588+

>rna10294 ID=rna10294|Name=rna10294|organism=Nannochloropsis gaditana|type=CDS|length=351bp|location=Sequence derived from alignment at KK037270.1:19112..19588+ (Nannochloropsis gaditana)
ATGGTATTTGCGGGTGTGTGGCCTTTGTCGACTGTTGGCACAACTCCTGC
AGCACGGGACTCTCCTGCGAGCAACACACGCCATGAGACAGATGTATCTG
TGCAAGCCTCGGATTCAacgccatcttcttctttccctagCGTGGCCGCG
GATGGCAGCACTCCGAACCATGTGACTCATCACCCTGCCCTCAGTGACAT
GGTGGCCCCCTTGGCGCCAGAGGCCTTACTGGACGCGGTCAACGAAGGAA
GCGTCAGTCTCGTGAATTCTCTGTTGTCGCAGGAGCCCTCCCTGGCCAAT
CACAGGGATGGCTTCGGTCAGGTGAGTGGTTGTGTGAGAGAGGACAAATG
A
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Synonyms
Publications