rna10287, rna10287 (mRNA) Nannochloropsis gaditana

Overview
Namerna10287
Unique Namerna10287
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1121
Alignment locationKK037269.1:43420..44170 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100942g2.6325.mrna
Orig protein idgnl|cribi|Naga_100942g2.6325
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037269.1supercontigKK037269.1:43420..44170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100942g2gene9988Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10287rna10287-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20417.1cds10256Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10287 ID=rna10287|Name=rna10287|organism=Nannochloropsis gaditana|type=mRNA|length=1121bp
GCTAACACCACGCGCACGGCGCATCATTAAAATGGTGTCATATCCATCTC
TCACTCGCTTGTCCACTCTTTTGCGCGTCGGAGGGAGCACAGGCGTTCTT
CATCATGCGTCTCTCGTTCAGCTTTTTCTTGGCCGTCGCGGCGACCACTC
AGGCTTTTGTCCCTGGTCCCGTCCGCCTCCCTTCAAGAGGCGCGTCTCTT
ATGGCACCAGAAGTCGGGCGTACAGCTGGCTGGAGCCGCCTCATGGCCAT
GAAAGATGTCGGTGTAGGGATAATCGGTGCCGGTCGCATTGGCATCGTGC
ACTTGGAAGCTCTAGCTGGCTGCCCTAGCGCCATCCCGGTTATCATCTCC
AACCCCACTGTGGCGAAGGCTCAAGAGGCAGCCGTCAAATTCAATGTCAG
GGAGTTCACAGACGACGCCATGAAGGTGATCCAGCACCCAGACGTAGATG
CTGTGTGGATCTGCTCCCCTTCTCAATATCATGCCGACCAGATCAAGGCC
TGTGCAGCGGCCGGCAAGCACGTTTTCTGCGAGAAGCCCATTGCGACGGG
CCTTGCTGAGACGATCGAGGCCATCAATACCTGCCGCGAGGCGGGCGTCA
AGCTCATGACAGCCCTCCAGCGCCGCTTCGACCCGAATTTCGCCCGAGTC
AAGCGAGCCATTCTCGAAGGAGAAGTCGGTAACGTGGTCAGCGTGAAGCT
CACGTCCCGCGACCCCTCTCCCCCGCCCTTCGAGTACGTCCGAGGCGGTG
GCGGCATCTTCAAGGACATGGCGGTGCACGACCTTGACATGTCTCGCTTC
CTGATGGGCACCGAGCCCGAGTCCATCCTGGCGCTCGGCTCCTGCCACAT
CGACGAACGGATCGGCTCCCTCCCCGGCGCCGAAGCCTTCGACACGGCTG
TGGTCATCGTCAAGTACCCGGGCGGCAAGACCGCCACCATTGACGTGTGT
CGCCAGGCCCCGTACGGCTATGACCAGCGGGCGGAGGTTTTGGGCCTGAA
GGGCATGATTGCCACCGACAACATGTACCCCAACACGGCACGCATCTTTA
CCAAGGACTCGACGCGTAACGCGGACTTGCCCTACGACTTTTTCATGTCC
CGCTACAAGGACGCCTATCTG
back to top

protein sequence of rna10287

>rna10287-protein ID=rna10287-protein|Name=rna10287|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MDATVCAPMRSMAEQSPLNACLGIRLVVSNIKDICRQYPSSTIQDMLRVV
DDSLAFLEHVQAEEWLRAALRGGGTDVLKVVDDIPPSLASASGISLGRSS
THASGAIDGRVTALKHLLDGEFSGLSARYCPGKSESISWTKLRRPDSGTL
SWGKEWQQSLCAPHTACGRCHLRRSGAILGAVESSTKPVGTLRAQSQQPN
KRQRRRRAPIQRFQEGPRS
back to top

mRNA from alignment at KK037269.1:43420..44170+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10287 ID=rna10287|Name=rna10287|organism=Nannochloropsis gaditana|type=mRNA|length=751bp|location=Sequence derived from alignment at KK037269.1:43420..44170+ (Nannochloropsis gaditana)
ATGGATGCCACGGTATGTGCTCCAATGAGGTCCATGGCTGAACAAAGTCC
GCTGAATGCATGCCTTGGGATTCGTCTGGTGGTCTCCAATATTAAAGATA
TCTGCCGTCAATACCCATCATCCACGATCCAAGACATGTTGAGAGTCGTG
GATGACAGCCTCGCTTTTCTTGAGCACGTGCAGGCTGAGGAGTGGCTCCG
AGCAGCtctgcgaggagggggaacggaTGTGTTGAAGGTGGTCGACGACA
TCCCACCGAGTCTTGCCTCCGCATCCGGAGTACGCAGGAGACGACAAATA
GGGAAAGTGGCCTTCTGAAGCCTTCGACGATTGGCCGGAGAAGATTTGGG
GCATTTATGGAAAGATATAGATTAGCCTTGGCCGTTCCTCGACACATGCC
AGTGGAGCAATTGACGGACGAGTAACTGCGCTCAAACACCTTCTGGATGG
CGAGTTCAGTGGACTCTCCGCTCGGTACTGTCCTGGAAAATCCGAGTCAA
TATCCTGGACAAAGCTTCGCAGACCTGATTCAGGCACTCTGTCGTGGGGA
AAAGAGTGGCAGCAGAGTTTGTGCGCCCCTCACACGGCCTGCGGTAGATG
CCACTTGAGACGCAGTGGGGCTATTTTAGGGGCTGTGGAAAGTAGCACCA
AGCCTGTCGGAACTTTGCGGGCCCAATCGCAGCAACCAAACAAGCGCCAA
AGGCGACGTAGAGCGCCTATCCAAAGATTTCAGGAAGGCCCTCGGTCATA
A
back to top

Coding sequence (CDS) from alignment at KK037269.1:43420..44170+

>rna10287 ID=rna10287|Name=rna10287|organism=Nannochloropsis gaditana|type=CDS|length=1320bp|location=Sequence derived from alignment at KK037269.1:43420..44170+ (Nannochloropsis gaditana)
ATGGATGCCACGGTATGTGCTCCAATGAGGTCCATGGCTGAACAAAGTCC
GCTGAATGCATGCCTTGGGATTCGTCTGGTGGTCTCCAATATTAAAGATA
TCTGCCGTCAATACCCATCATCCACGATCCAAGACATGTTGAGAGTCGTG
GATGACAGCCTCGCTTTTCTTGAGCACGTGCAGGCTGAGGAGTGGCTCCG
AGCAGCtctgcgaggagggggaacggaTGTGTTGAAGGTGGTCGACGACA
TCCCACCGAGTCTTGCCTCCGCATCCGGAATTAGCCTTGGCCGTTCCTCG
ACACATGCCAGTGGAGCAATTGACGGACGAGTAACTGCGCTCAAACACCT
TCTGGATGGCGAGTTCAGTGGACTCTCCGCTCGGTACTGTCCTGGAAAAT
CCGAGTCAATATCCTGGACAAAGCTTCGCAGACCTGATTCAGGCACTCTG
TCGTGGGGAAAAGAGTGGCAGCAGAGTTTGTGCGCCCCTCACACGGCCTG
CGGTAGATGCCACTTGAGACGCAGTGGGGCTATTTTAGGGGCTGTGGAAA
GTAGCACCAAGCCTGTCGGAACTTTGCGGGCCCAATCGCAGCAACCAAAC
AAGCGCCAAAGGCGACGTAGAGCGCCTATCCAAAGATTTCAGGAAGGCCC
TCGGTCATAAATGGATGCCACGGTATGTGCTCCAATGAGGTCCATGGCTG
AACAAAGTCCGCTGAATGCATGCCTTGGGATTCGTCTGGTGGTCTCCAAT
ATTAAAGATATCTGCCGTCAATACCCATCATCCACGATCCAAGACATGTT
GAGAGTCGTGGATGACAGCCTCGCTTTTCTTGAGCACGTGCAGGCTGAGG
AGTGGCTCCGAGCAGCtctgcgaggagggggaacggaTGTGTTGAAGGTG
GTCGACGACATCCCACCGAGTCTTGCCTCCGCATCCGGAATTAGCCTTGG
CCGTTCCTCGACACATGCCAGTGGAGCAATTGACGGACGAGTAACTGCGC
TCAAACACCTTCTGGATGGCGAGTTCAGTGGACTCTCCGCTCGGTACTGT
CCTGGAAAATCCGAGTCAATATCCTGGACAAAGCTTCGCAGACCTGATTC
AGGCACTCTGTCGTGGGGAAAAGAGTGGCAGCAGAGTTTGTGCGCCCCTC
ACACGGCCTGCGGTAGATGCCACTTGAGACGCAGTGGGGCTATTTTAGGG
GCTGTGGAAAGTAGCACCAAGCCTGTCGGAACTTTGCGGGCCCAATCGCA
GCAACCAAACAAGCGCCAAAGGCGACGTAGAGCGCCTATCCAAAGATTTC
AGGAAGGCCCTCGGTCATAA
back to top
Synonyms
Publications