rna10270, rna10270 (mRNA) Nannochloropsis gaditana

Overview
Namerna10270
Unique Namerna10270
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length652
Alignment locationKK037268.1:43282..44067 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101618g1.5781.mrna
Orig protein idgnl|cribi|Naga_101618g1.5781
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037268.1supercontigKK037268.1:43282..44067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101618g1gene9974Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10270rna10270-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20434.1cds10239Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10270 ID=rna10270|Name=rna10270|organism=Nannochloropsis gaditana|type=mRNA|length=652bp
CCACCAGGCTGCTGCAGGTGTCAATATTGTGTGGGGATGATGCCGTCAAC
TACGGGCAGAACACGCCTCCTGTAGGGTCTTACAGTGCCCTACGATCTTC
TGACTGAGCAATCAGGCACCGCAAGCACAGTAATGCACCATGCTGCATGC
ATTTCTCCTTCACCTTCCTACCAGTCCCAAAAAAATGAAAAAGAGCACAA
TCAACGAAGCCTGATGAGAAATCAAGTCCGGCCACGGCCCGCCCGGGGCG
GAGAAAGGCAGTTGTCTGAGGAAGCTGCAACCCCACATTGTCACGTACCA
TCAACACCAGCGTCAGATTTTTACGATATATCATCTCCTCCCAATCCTGC
GTGGCCGTCGCGCGTGCAAATGGTCGCTTCCCTGCCCGCACAGGCCGCAC
TTGTCAATCCAAAGCATGTAACTGTTCCCCGTCACAACTATCCTTTTACC
CACAATCGGGCCATGCCCTCCCGTGCGAGTGGTTTGGAAGAAGGGGAGGA
GGGCGAGGGGGAGGACGCGGGGGAGGAGGGGAGGAAACAGCTCCGGGTGG
GGTCTCCATCGGCCATGATGGGATGGATGCTGACAGGGGACAAGGTAAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAG
GG
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protein sequence of rna10270

>rna10270-protein ID=rna10270-protein|Name=rna10270|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MILRSSTMEGSVATSGTKSQRRHTLPSSSSIFPIRVLLASYFVLAALADD
PLINMYMRGSGDRVPGNFPYALHFVPDIPAWSTGELWFAVLSDTGLHDLQ
RQCGQDRSHPR
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mRNA from alignment at KK037268.1:43282..44067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10270 ID=rna10270|Name=rna10270|organism=Nannochloropsis gaditana|type=mRNA|length=786bp|location=Sequence derived from alignment at KK037268.1:43282..44067- (Nannochloropsis gaditana)
ATGATTTTGAGAAGTAGTACTATGGAGGGTAGTGTCGCGACGTCCGGCAC
AAAGAGCCAGCGCCGCCATACCCTTCCTTCTTCTTCCTCAATATTCCCGA
TCCGTGTGCTCCTTGCCTCTTACTTCGTGCTCGCTGCCCTCGCAGACGAT
CCTCTGATCAACATGTACATGCGTGGCAGTGGTGACAGGGTGCGTGCCTG
CCTTCATCCTACCCTCTTACATCCCGACCGCTCTTAGAGGCTCTACCTCC
CTTCCCATGTACTCTCCTCCCTTCCTCCCTCGCTCCATCCATCTCTTGAA
GACACTCTCAACAAGCATATCTTGCCTTCTGTATTTTTCTCTCTTTCTTT
GTCTCCCTTGCTATCACCGGTCCGCTGGTTCATGTTCTAAGGGCCTCGGC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGCTCTTCCATCGTGCTAGG
TTCCCGGTAACTTCCCCTACGCCCTTCACTTTGTACCTGATATACCCGCA
TGGTCCACGGGGGAGCTCTGGTTCGCGGTCCTCAGCGACACAGGTGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGAGGACGGGAAAAAGAAAGGACAAT
TGACGTCGGCACCCCTTGTAGGAATGTGAAAGCCTCCCTTTACGCTCCCT
CCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCGAGGCCTCCACGACCTG
CAACGGCAGTGCGGCCAAGACGTTGGGCTAACCGAAGAAAACCGCATCAC
TTTCTCTTCCACTTTTAGCGGAGTCACCCGCGTTAA
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Coding sequence (CDS) from alignment at KK037268.1:43282..44067-

>rna10270 ID=rna10270|Name=rna10270|organism=Nannochloropsis gaditana|type=CDS|length=1344bp|location=Sequence derived from alignment at KK037268.1:43282..44067- (Nannochloropsis gaditana)
CGGAGTCACCCGCGTTAAGCCTCCACGACCTGCAACGGCAGTGCGGCCAA
GACGTTCCCGGTAACTTCCCCTACGCCCTTCACTTTGTACCTGATATACC
CGCATGGTCCACGGGGGAGCTCTGGTTCGCGGTCCTCAGCGACACAGATG
ATTTTGAGAAGTAGTACTATGGAGGGTAGTGTCGCGACGTCCGGCACAAA
GAGCCAGCGCCGCCATACCCTTCCTTCTTCTTCCTCAATATTCCCGATCC
GTGTGCTCCTTGCCTCTTACTTCGTGCTCGCTGCCCTCGCAGACGATCCT
CTGATCAACATGTACATGCGTGGCAGTGGTGACAGGCGGAGTCACCCGCG
TTAAGCCTCCACGACCTGCAACGGCAGTGCGGCCAAGACGTTCCCGGTAA
CTTCCCCTACGCCCTTCACTTTGTACCTGATATACCCGCATGGTCCACGG
GGGAGCTCTGGTTCGCGGTCCTCAGCGACACAGATGATTTTGAGAAGTAG
TACTATGGAGGGTAGTGTCGCGACGTCCGGCACAAAGAGCCAGCGCCGCC
ATACCCTTCCTTCTTCTTCCTCAATATTCCCGATCCGTGTGCTCCTTGCC
TCTTACTTCGTGCTCGCTGCCCTCGCAGACGATCCTCTGATCAACATGTA
CATGCGTGGCAGTGGTGACAGGCGGAGTCACCCGCGTTAAGCCTCCACGA
CCTGCAACGGCAGTGCGGCCAAGACGTTCCCGGTAACTTCCCCTACGCCC
TTCACTTTGTACCTGATATACCCGCATGGTCCACGGGGGAGCTCTGGTTC
GCGGTCCTCAGCGACACAGATGATTTTGAGAAGTAGTACTATGGAGGGTA
GTGTCGCGACGTCCGGCACAAAGAGCCAGCGCCGCCATACCCTTCCTTCT
TCTTCCTCAATATTCCCGATCCGTGTGCTCCTTGCCTCTTACTTCGTGCT
CGCTGCCCTCGCAGACGATCCTCTGATCAACATGTACATGCGTGGCAGTG
GTGACAGGCGGAGTCACCCGCGTTAAGCCTCCACGACCTGCAACGGCAGT
GCGGCCAAGACGTTCCCGGTAACTTCCCCTACGCCCTTCACTTTGTACCT
GATATACCCGCATGGTCCACGGGGGAGCTCTGGTTCGCGGTCCTCAGCGA
CACAGATGATTTTGAGAAGTAGTACTATGGAGGGTAGTGTCGCGACGTCC
GGCACAAAGAGCCAGCGCCGCCATACCCTTCCTTCTTCTTCCTCAATATT
CCCGATCCGTGTGCTCCTTGCCTCTTACTTCGTGCTCGCTGCCCTCGCAG
ACGATCCTCTGATCAACATGTACATGCGTGGCAGTGGTGACAGG
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Synonyms
Publications