rna1027, rna1027 (mRNA) Nannochloropsis gaditana

Overview
Namerna1027
Unique Namerna1027
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length930
Alignment locationCM002456.1:996484..998218 +

Link to JBrowse

Properties
Property NameValue
Producthistone 3
Orig transcript idgnl|cribi|Naga_100050g33.6879.mrna
Orig protein idgnl|cribi|Naga_100050g33.6879
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:996484..998218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100050g33gene990Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1027rna1027-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29656.1cds1026Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1027 ID=rna1027|Name=rna1027|organism=Nannochloropsis gaditana|type=mRNA|length=930bp
TTTCGTGTTTGCTCTTTGCTTTCCTGCCTGTCATCTAAGAATACATGATG
CCTATGTGGTCTCAGTGCACTTTTGACATTTACTGCCTGGCTTTGAAGAC
TCCTCTGTCGCACCTGTCACCTTTTTCTTATACGTAGGGCGAACTTTTGT
TTCTGCCTGTCAAGTCAAATGTGATTCAGTTAATGCAGGTCTCAGGCCGC
TTACCCTTCCATGGTGTAACTAACCCTGAAGTAACCTTCGAACGGAATAC
GGAAGCTGTGCAAAGCCCAATGTTTTTAAAAACCGCATACATTTAACGAT
TGTGCCCTCCGATGTCCCCTTCAGCTCTCTAGCTATGAGGGGGTACATGG
TCCTCATGTGTTCGAAATCTGACCTTGTCTACTCTTCACACACAGAAAAC
CTCTTAACTACTCTCATCAACAATGGCTGGCAAAGGCAAAGGTGGCCGTG
GCTCCGGCAAGAAGGGTGTGTCCCGTTCCTCCAAGGCTGGTCTCCAGTTC
CCCGTAGGCCGTATCTCCCGCTTCCTCAAGAAGGGACGTTACGCGGCCCG
CGTCGGCTCTGGTGCCCCCGTGTACCTGGCTGCTGTCCTCGAGTATCTGA
CGGCTGAAATTCTCGAGCTGGCTGGAAACGCCGCTCGCGACAACAAGAAG
ACCCGCATCATCCCCCGCCACGTCCAGCTTGCTGTCCGCAACGACGAGGA
GCTCAACAAGCTTCTTGGCGGTGTGACCATCGCTTCCGGTGGTGTCCTCC
CCAACATCCACTCTGTCCTTCTCCCCAAGACCAAGGCGAAGAAGTCGGCG
TAAATCACCTACAACCCTTAAAAAGACAACCATCAGAGGCCTTTTCAGGC
CTCACTATGTTAAACATACCGATCACCTGCTTTGTTTCGTTACTTTTCGT
GTGAAGCTTGTTACCTGTACTTGTTCGATC
back to top

protein sequence of rna1027

>rna1027-protein ID=rna1027-protein|Name=rna1027|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEATEAY
LVGLFEDTNLAAIHAKRVTIMPKDVQLARRIRGERS
back to top

mRNA from alignment at CM002456.1:996484..998218+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1027 ID=rna1027|Name=rna1027|organism=Nannochloropsis gaditana|type=mRNA|length=1735bp|location=Sequence derived from alignment at CM002456.1:996484..998218+ (Nannochloropsis gaditana)
AGGGTGGACGTGTCGGAGGTacctcttttcttttctgtcTGTCCCCCCTT
AggccccgcctccgtccctccaaGTTCCACTCTGCATCTGCATACTCAAA
ACTTGATGATGAGTGCCGTGCGGTATTTCTTTTTGTCCATGACCAAGGAG
GGCTCTTCTGACATGAAGCAACCGGAGACGAGGCTCCTTCAGTGATCTCT
CTATTGCTACCCATTGAAAGATTCCTCGTCAGCCTCTTAATGTGTATAGA
GTAGTGTAGGAGGCATGAAAACTGACTGTAAAATTAATGGTGGCGCCCTC
GAATTATGCTCTGAGTCTGACGTGCTCATATCACGCCATTATCCAACACA
GCTTTAACTCCAGCAATGGCCCGCACCAAGCAAACTGCCCGTAAGTCCAC
CGGCGGCAAGGCGCCCCGCAAGCAGCTCGCCACCAAGGCGGCGCGCAAGT
CCGCACCCGCCACCGGCGGTGTGAAGAAGCCCCACCGTTACCGCCCTGGA
ACTGTGGCCCTCCGTGAGATTCGCCGCTACCAGAAGAGCACGGAGCTCCT
CATCCGCAAGCTGCCCTTCCAGCGCCTGGTCCGTGAGATCGCTCAGGACT
TCAAGACAGACCTGCGATTCCAGGGGTctgccgtccttgccctgcAGGAG
GCCACTGAGGCTTACCTTGTGGGTCTCTTCGAGGACACCAACTTGGCTGC
CATCCACGCCAAGCGTGTGACGATCATGCCCAAGGATGTGCAGCTCGCCC
GTCGCATCCGTGGAGAGCGATCTTAAGATGATCCTACCTCCAGCAATCTT
TGTATAAATTGAAACATACAAAGCAAAACTCCCAGGGTTCTATTGAACCC
CTCATGTACATGGACGACGCCGCGCCTTCCCTTTTGTCTGACTTTACTTT
GTAGTGTGGCCTTTGTGTCCGAGTTATATCTTTCCCACAAATATGGTCTT
TGACCACCTACATACCGTTTTTATTCCAAGGGTGACAAGAACTGCTCGAC
AGACATGGCTCATCTGGTTGTCAATGGTGAGGTTTTCCGCTACTTCCTAT
TTTCGATTCATCTGCGTGGCCACATGGTTTCATGCGATGGACAATTTTAT
CCACAGGATTTTTTTAGTATGCTATCGACAGCGTGTATCATCCGGAGCCT
CCAGGTACTTCTCGACCACCATCTTCTGAGGTGCATTGTAATTTTCAGGC
CGAGCGAAAGGAGCAAGTGGAGTCACTCAGCGGTAAACTACTTACTTATC
TTCATAGAAGAGCCGTAATAAGAAAAGATCacgcgggaaaaaaaaacaag
ggCTTTCAAATTGAGCAAATTTCGATTGAGAGGAGTATATTATGGTGGAA
GAATATATATGGGAGGTATTGTTGGTTTTTAATCTTTATAAGATTTGTCT
TTTTAGTATGAAAGCGCTGTTGTGCAAACATCTCTGTTCACATTGCGTTC
TAGGAAGTCTTTCCTGACTTCAAAAGTCCTTTCCCGGAACAATGACGGAA
AATCGGAGTCTCGCACGCAAGAAACGAAGTGAAGATACTTTATGGCAGAC
CGTACTACCCCTTTAAATCAACAAAATGAATGAACGTTGTGATCAAATAC
ATGAATATCTACGTGTCTTAATCTCTATTCAACAGTTGATCGTTCGCTTC
GTGTTCTATTATCTTGTCAAAATCCCTTTGTTTTGGGTGGTACATGATTA
CCTCGCCCACCCTCCACTCACTGGCACTCGTTTCT
back to top

Coding sequence (CDS) from alignment at CM002456.1:996484..998218+

>rna1027 ID=rna1027|Name=rna1027|organism=Nannochloropsis gaditana|type=CDS|length=411bp|location=Sequence derived from alignment at CM002456.1:996484..998218+ (Nannochloropsis gaditana)
ATGGCCCGCACCAAGCAAACTGCCCGTAAGTCCACCGGCGGCAAGGCGCC
CCGCAAGCAGCTCGCCACCAAGGCGGCGCGCAAGTCCGCACCCGCCACCG
GCGGTGTGAAGAAGCCCCACCGTTACCGCCCTGGAACTGTGGCCCTCCGT
GAGATTCGCCGCTACCAGAAGAGCACGGAGCTCCTCATCCGCAAGCTGCC
CTTCCAGCGCCTGGTCCGTGAGATCGCTCAGGACTTCAAGACAGACCTGC
GATTCCAGGGGTctgccgtccttgccctgcAGGAGGCCACTGAGGCTTAC
CTTGTGGGTCTCTTCGAGGACACCAACTTGGCTGCCATCCACGCCAAGCG
TGTGACGATCATGCCCAAGGATGTGCAGCTCGCCCGTCGCATCCGTGGAG
AGCGATCTTAA
back to top
Synonyms
Publications