rna10260, rna10260 (mRNA) Nannochloropsis gaditana

Overview
Namerna10260
Unique Namerna10260
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length737
Alignment locationKK037268.1:14239..15515 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101169g2.9867.mrna
Orig protein idgnl|cribi|Naga_101169g2.9867
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037268.1supercontigKK037268.1:14239..15515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101169g2gene9962Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20444.1cds10229Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10260rna10260-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10260 ID=rna10260|Name=rna10260|organism=Nannochloropsis gaditana|type=mRNA|length=737bp
CCTCCTCGCTCCCTCCCCCGCCCCCCCTGCCGGCAGGTCTTCGAGCTCAT
GGAAGGCCTCGGCGTAGCTCCGGACGCTTTCTCCTTGAACAGTCTCCTCG
CTCACACCCTCCGTCTTCACCGACAGCCCCAGACTTCCCCCCCTCCTTCC
TTGTCCCCTCCCCTGCCACCCTCCCCTTCCCCCTTGTCGCTCCTGAAAGG
CTTGCTCAGCTCGTTCCCTACCTTAACCCCCAATATGAACACGTTTCGCG
CCATTTTGGAGGCGTGTGGGACAAGAGGGCTTCTAGAGCTCTGTGAGTAC
ATGGAGGGAAGAAGCCAAGGGAGGGAGGGACGGGGGGAGGGAGGGAGGGA
GGAAGGGAGGGAGGGAGAACGGGTGGCCCCGGAGGTGTACAGACTGTTGC
TGCAGCGACTGGATGGCGAGGAAGGGGAGGAGGGCTTGAGAAGGGGCTGG
AGGTTGTTAGCGAAGACTTGGGATGAGCTTCAGTAGGAGTGGGGGAGAAC
AACCTAGCTGTGAGGAGGGGGGAGGGAAGGAGGGGGCAAGCGCTAGGAAA
CGGCCGTGGAGAAGGAAAGGAGGAGAAGGAGGGCGAAGGGCATGATGGGA
GGGAAGGTGATGCACGAATGGGAAGGGATTGCAAAGACGGAACGAGCGCC
TAGGGGGGCAGGCGAGGAGATAACGGCTGTCTCGATGCAGTGGAGGGCGC
ACGAGGGCGAAGGAAGGGACCACGGTCGAAAGAAACA
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protein sequence of rna10260

>rna10260-protein ID=rna10260-protein|Name=rna10260|organism=Nannochloropsis gaditana|type=polypeptide|length=361bp
MHRLNIILCTMMTSSSRVGHSLWHARSLRTSVLLSSKSTTVTDARRLQEN
VPIRLGGFAAFSTRNIKLLSRKIRRRGAGLPHQQRYGKALRATQSSQAEE
SSEGSNTNDLPSSIESMQPVSASSPQIGSCLPQNLISSTLLPLDLSTYRQ
LLSQAPSPSEALALLKEMHDGGLTVDPEALLCVMRLCAGHPDYFASTLHL
HAQLLAFPSPSSLPSPLPPSSPSDDPPGVFPFSNFTLISKAFITSEEKPV
DGPEKGQWENGCRGSRIPKVDADVTPVEGIATAAAIRESYGLALAACIYV
GGRQGDGHARHLLWEMRAHGVAPNLVMYRELARTGLAVGEGGREGGEGWE
EGEDWWGYADF
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mRNA from alignment at KK037268.1:14239..15515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10260 ID=rna10260|Name=rna10260|organism=Nannochloropsis gaditana|type=mRNA|length=1277bp|location=Sequence derived from alignment at KK037268.1:14239..15515- (Nannochloropsis gaditana)
AATGCACAGATTGAATATTATCTTGTGTACGATGATGACCTCGTCTTCGC
GCGTGGGTCATTCCTTGTGGCACGCCCGCTCGCTTCGAACATCCGTTCTG
TTGTCCTCTAAGAGTACGACAGTAACTGATGCGAGACGGCTCCAGGAGAA
TGTCCCCATTAGACTGGGTGGTTTCGCTGCCTTTAGTACCCGCAATATAA
AATTGCTTAGCCGAAAAATCCGCCGCCGAGGTGCTGGACTCCCCCATCAA
CAACGGTATGGAAAGGCGCTACGAGCAACGCAGTCGTCTCAAGCGGAGGA
GAGCAGCGAAGGATCGAACACAAACGATCTACCCTCATCAATCGAGTCAA
TGCAGCCCGTCTCTGCTTCATCTCCTCAAATCGGGTCGTGTCTTCCCCAA
AACTTGATATCCTCCACTCTGCTGCCGCTCGACCTGAGTACTTACCGTCA
GCTCCTCTCCCAAGCTCCCTCACCCTCCGAAGCCCTAGCCCTTCTCAAAG
AAATGCATGATGGAGGACTCACGGTGGACCCAGAGGCTCTTCTCTGTGTG
ATGCGTTTGTGCGCAGGACACCCAGATTACTTTGCCAGCACGCTACACTT
GCATGCTCAACTTTTGGCCTTCCCCTCTCCATCTTCCCTTCCTTCTCCCC
TCCCTCCTTCGTCACCTTCTGATGATCCTCCAGGCGTCTTTCCTTTCTCT
AATTTCACTCTCATTTCAAAAGCATTTATCACTTCGGAGGAAAAGCCTGT
GGATGGGCCAGAAAAAGGGCAATGGGAGAACGGATGCCGAGGGTCACGAA
TTCCAAAAGTAGATGCTGACGTCACTCCCGTTGAGGGCATTGCCACAGCC
GCCGCTATACGAGAGAGCTACGGCCTTGCCCTGGCCGCTTGCATATACGT
GGGCGGCAGGCAGGGCGACGGGCACGCCCGCCATCTTTTGTGGGAGATGC
GGGCGCACGGGGTGGCTCCCAACCTGGTCATGTACCGGGAGTTGGCAAGA
ACCGGACTGGCCGTGGGGGAGGGAGGGAGGGAGGGAGGGGAAGGCTGGGA
GGAGGGAGAGGATTGGTGGGGCTACGCGGATTTTTAGGAAGCTGCTGGCG
ATGGTTCCGGCGGAGGCTTCGCTTGCTGGGCAGGTTCAGGATCAAGCGTT
TCCCTCTCCCTCGTCCTCCTCGCTTCCCTCCCCTCCCTCCTTCCCCCCCT
CCTTCCCTTCCTCCCCCTTCGCGGCTGCCCCCGCCCAGGCACGGAAGGGC
TTGATCGTCCAATGTAGGGACCGGGAG
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Coding sequence (CDS) from alignment at KK037268.1:14239..15515-

>rna10260 ID=rna10260|Name=rna10260|organism=Nannochloropsis gaditana|type=CDS|length=1086bp|location=Sequence derived from alignment at KK037268.1:14239..15515- (Nannochloropsis gaditana)
ATGCACAGATTGAATATTATCTTGTGTACGATGATGACCTCGTCTTCGCG
CGTGGGTCATTCCTTGTGGCACGCCCGCTCGCTTCGAACATCCGTTCTGT
TGTCCTCTAAGAGTACGACAGTAACTGATGCGAGACGGCTCCAGGAGAAT
GTCCCCATTAGACTGGGTGGTTTCGCTGCCTTTAGTACCCGCAATATAAA
ATTGCTTAGCCGAAAAATCCGCCGCCGAGGTGCTGGACTCCCCCATCAAC
AACGGTATGGAAAGGCGCTACGAGCAACGCAGTCGTCTCAAGCGGAGGAG
AGCAGCGAAGGATCGAACACAAACGATCTACCCTCATCAATCGAGTCAAT
GCAGCCCGTCTCTGCTTCATCTCCTCAAATCGGGTCGTGTCTTCCCCAAA
ACTTGATATCCTCCACTCTGCTGCCGCTCGACCTGAGTACTTACCGTCAG
CTCCTCTCCCAAGCTCCCTCACCCTCCGAAGCCCTAGCCCTTCTCAAAGA
AATGCATGATGGAGGACTCACGGTGGACCCAGAGGCTCTTCTCTGTGTGA
TGCGTTTGTGCGCAGGACACCCAGATTACTTTGCCAGCACGCTACACTTG
CATGCTCAACTTTTGGCCTTCCCCTCTCCATCTTCCCTTCCTTCTCCCCT
CCCTCCTTCGTCACCTTCTGATGATCCTCCAGGCGTCTTTCCTTTCTCTA
ATTTCACTCTCATTTCAAAAGCATTTATCACTTCGGAGGAAAAGCCTGTG
GATGGGCCAGAAAAAGGGCAATGGGAGAACGGATGCCGAGGGTCACGAAT
TCCAAAAGTAGATGCTGACGTCACTCCCGTTGAGGGCATTGCCACAGCCG
CCGCTATACGAGAGAGCTACGGCCTTGCCCTGGCCGCTTGCATATACGTG
GGCGGCAGGCAGGGCGACGGGCACGCCCGCCATCTTTTGTGGGAGATGCG
GGCGCACGGGGTGGCTCCCAACCTGGTCATGTACCGGGAGTTGGCAAGAA
CCGGACTGGCCGTGGGGGAGGGAGGGAGGGAGGGAGGGGAAGGCTGGGAG
GAGGGAGAGGATTGGTGGGGCTACGCGGATTTTTAG
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Synonyms
Publications