rna10256, rna10256 (mRNA) Nannochloropsis gaditana

Overview
Namerna10256
Unique Namerna10256
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length438
Alignment locationKK037268.1:10403..11680 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101516g2.2191.mrna
Orig protein idgnl|cribi|Naga_101516g2.2191
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037268.1supercontigKK037268.1:10403..11680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101516g2gene9958Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10256rna10256-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20448.1cds10225Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10256 ID=rna10256|Name=rna10256|organism=Nannochloropsis gaditana|type=mRNA|length=438bp
ATGCATCATTCCTTTCATGGGAACGGCACTGCCATGCGAGTTGAAATCGT
TGGGAGGGACGGCAACGTTCTCCACACCCAGATATTGCGGCAGAAGAGGG
TGGTGGAGAAGACGGGCGGGGGTGCGGAGGGGGTGTTGGAGGTGAAATCA
AGGGACAGGAGGATGCCGGTAGAGATGTGCTTAGGATGGTTGAGGAATCT
CCGAGGGTTGGAAAATGAAAATGGTAGATATACCTGCGTGAAAAGGCCGT
GTAGATCTAGGAACGTGGCATGTCGTGAGGAGAGGGCGAGGGGCCATCGA
AACACCCTAATAAATCTCACCATAACCCCTTTGAAAGCCACGAGAAGGCA
GACAGTGCGTGAATCCATGGCAATACGAAACTCGTTGTACAAAATAAGAT
GCAAATATCAATCCTTGTTGGGAGAGACGTGGATGTGA
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protein sequence of rna10256

>rna10256-protein ID=rna10256-protein|Name=rna10256|organism=Nannochloropsis gaditana|type=polypeptide|length=330bp
MAPFLKILPCAGTFAFSDVSLLDAGDQQVLPPRGLPTRFQAWSFFPVVSS
PPGHDKEEALIPGPLSMASLPHTPGDSTSLPLLHVGTGLPGLEGEQGNGQ
EGNNASVAGMLQSRRPSAVPEPSEGPWAGLDGWESRRMSREVASMLKRMD
AEARTKGEKPGSLATRAQRALNRQQMVLVTTAEAGVIELARARVAEEREK
AALRSPLLQSTVAAQGEREGGGAARLALPAPETLVEEREVSKRMMAKVMS
REARARGGGRERPGPALPKGSWVGRVQAAYAKCEKVRLTVEETKDWDALV
EEVGAEGEAGGREKTEAPGREGGREGGREG
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mRNA from alignment at KK037268.1:10403..11680+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10256 ID=rna10256|Name=rna10256|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp|location=Sequence derived from alignment at KK037268.1:10403..11680+ (Nannochloropsis gaditana)
GCACTGGAATGCTCCGACGTTCCCAAATTGAAGCCTAAACCTCCCTCTTG
CCACGttgcaggaagagaagaggcgCGCAAGGACCCTCTCTGGTCATGTG
CAGTGGGTAAATATACCTTAATACAGAAACGCTGTGCAGAGTTGGCTTGT
CGCAAAACTGCGTCTGTGTGTTGTAACACAACACTTGCCATGATTCGCTC
ACTTCCAGCAGTGCAGGCGAGACTTCTCAGAGGAAAACGTCTGCTTTTAC
TTCGAGTCCCTCATGAGCTCAGTCCTTTGACATTGTTATGGCGCCTTTTC
TGAAGATTTTACCATGCGCTGGCACCTTTGCTTTCTCTGATGTCTCTCTT
TTGGATGCAGGGGACCAACAGGTGCTCCCACCACGAGGCCTCCCTACACG
CTTTCAGGCCTGGAGCTTCTTTCCGGTTGTTTCTTCGCCCCCTGGCCACG
ATAAAGAGGAAGCATTGATACCCGGTCCACTCTCCATGGCATCCCTCCCG
CATACCCCGGGTGACAGTACCTCGTTGCCGCTGCTTCACGTCGGCACTGG
CCTTCCcggcttggagggggagcagggcaacgggcaggagggaaacaACG
CCAGCGTGGCAGGGATGTTGCAATCCCGTCGGCCCTCTGCAGTGCCTGAA
CCCTCCGAAGGGCCCTGGGCCGGGTTGGACGGGTGGGAGAGCCGGAGGAT
GAGCCGGGAAGTCGCGTCCATGCTCAAGCGCATGGACgcggaggcgagga
cgaagggggagaaaccGGGGAGTTTGGCCACGCGGGCGCAGAGGGCCTTG
AACCGGCAGCAGATGGTTTTGGTGACGACGGCAGAAGCGGGCGTCATCGA
GCTGGCGCGAGCGCGCGTggccgaggagagggagaaggcagcgCTTCGGT
CGCCGTTGTTGCAGTCGACGGTGGCTGcacagggggaaagggaaggaggg
ggggcggcgcggCTGGCGTTGCCCGCGCCGGAgaccttggtggaggagcg
ggaagtGAGCAAGAGGATGATGGCCAAAGTGATGTCCCGGGAGGCTCGag
cgcgcggaggagggagggaaaggccggGGCCCGCGTTGCCCAAGGGCTCG
TGGGTGGGGCGGGTGCAAGCTGCTTACGCCAAATGCGAGAAGGTGAGgct
gacggtggaggaaaccAAGGACTGGGAcgccctggtggaggaggtggggg
cggagggggaggcgggcgggagggagaagaccgaggcgccggggagggag
ggcgggagggagggcgggagggagggac
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Coding sequence (CDS) from alignment at KK037268.1:10403..11680+

>rna10256 ID=rna10256|Name=rna10256|organism=Nannochloropsis gaditana|type=CDS|length=991bp|location=Sequence derived from alignment at KK037268.1:10403..11680+ (Nannochloropsis gaditana)
ATGGCGCCTTTTCTGAAGATTTTACCATGCGCTGGCACCTTTGCTTTCTC
TGATGTCTCTCTTTTGGATGCAGGGGACCAACAGGTGCTCCCACCACGAG
GCCTCCCTACACGCTTTCAGGCCTGGAGCTTCTTTCCGGTTGTTTCTTCG
CCCCCTGGCCACGATAAAGAGGAAGCATTGATACCCGGTCCACTCTCCAT
GGCATCCCTCCCGCATACCCCGGGTGACAGTACCTCGTTGCCGCTGCTTC
ACGTCGGCACTGGCCTTCCcggcttggagggggagcagggcaacgggcag
gagggaaacaACGCCAGCGTGGCAGGGATGTTGCAATCCCGTCGGCCCTC
TGCAGTGCCTGAACCCTCCGAAGGGCCCTGGGCCGGGTTGGACGGGTGGG
AGAGCCGGAGGATGAGCCGGGAAGTCGCGTCCATGCTCAAGCGCATGGAC
gcggaggcgaggacgaagggggagaaaccGGGGAGTTTGGCCACGCGGGC
GCAGAGGGCCTTGAACCGGCAGCAGATGGTTTTGGTGACGACGGCAGAAG
CGGGCGTCATCGAGCTGGCGCGAGCGCGCGTggccgaggagagggagaag
gcagcgCTTCGGTCGCCGTTGTTGCAGTCGACGGTGGCTGcacaggggga
aagggaaggagggggggcggcgcggCTGGCGTTGCCCGCGCCGGAgacct
tggtggaggagcgggaagtGAGCAAGAGGATGATGGCCAAAGTGATGTCC
CGGGAGGCTCGagcgcgcggaggagggagggaaaggccggGGCCCGCGTT
GCCCAAGGGCTCGTGGGTGGGGCGGGTGCAAGCTGCTTACGCCAAATGCG
AGAAGGTGAGgctgacggtggaggaaaccAAGGACTGGGAcgccctggtg
gaggaggtgggggcggagggggaggcgggcgggagggagaagaccgaggc
gccggggagggagggcgggagggagggcgggagggagggac
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Synonyms
Publications