rna10224, rna10224 (mRNA) Nannochloropsis gaditana

Overview
Namerna10224
Unique Namerna10224
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1427
Alignment locationKK037266.1:52442..52953 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100574g2.8361.mrna
Orig protein idgnl|cribi|Naga_100574g2.8361
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:52442..52953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100574g2gene9928Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10224rna10224-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20482.1cds10193Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10224 ID=rna10224|Name=rna10224|organism=Nannochloropsis gaditana|type=mRNA|length=1427bp
TCAGTACCTTTCGTGTCTAGATCGCGATATGACGTTTTTCAGGTTCATTG
TTCCGTCGGACGCGGATCCCAGGTTAGTGTTCTCTAGATGTATACGCCAG
ACAATAAGAAATTATGCGTGACAAGGTTTTTCCTAGCTGCACGCAATTCA
TGGTCATCTCCAAAGGTCGAAAATACTCAGTAGGTTGATCTCGAATTAAG
CTCTTTCCAAGAAGGCTGCCCATGCTCAGTCCGATAAATGCTACGACATT
TTATAAAATCCATGCCGGACGCCACATCTCCATCCTTACATCTATCTGTA
CGTTATTCGTAGAATCCAACAACTGGTTTATGCAGGGTTCTGACCTTCTT
TTGGCAACAATAGGCAGCGAGGGATGAGGATCGTCGGTGACTGTCGCCAA
GTCCAATATTTAACACCTTTTTCGTTATTCTTTCGTACTTTTGCGTGGTT
TTCCTTGCCCTTGCACGCGTCAACTCGACAATATCTTCTTCGCGTCTGAG
GATTCAATCACTGTTGCATTGAAGGGTCTATGGGGGATGGATGGGATAGT
TCAGTGGTTTACTTTCCAGAGGCTATCACCATCATGGTTCTTGAGAGTCA
GGTTGTGGATTACAATTATTTCCGAGAGTATCGAAGAGAGTGCCTTATCA
GGGATCAGTAGTCTCTATTCCTGCTTTTGTGGAGATCTGTGCACATTTCT
GTCGTCATGACCATGTCCAAAGCATACATTAGTTTCTTTGGAGGTATTTT
TGGGTTAGGACGGGGGAGTCAACCTCCTTCCCGTGGCACGTCCGATCCCC
AGATTCTTTGACAAGAGAAAACACTTGCCCGGCCTCACGACCATGGTCGA
AAGCTTTTTCCCACCACCAGACCCTTTTGACCTTGGACAGACGGAATACC
AGCGGACCAACATGGGGAGTGGGACCAATTCTCAAGGAAGTGTGGCCAAG
TTTGACATTGAAAAGGGCGTCAATCATGACGGCGCTGGGAAAGAGGACCT
GGCCGTCGCGGTGCATTCCGGCCCCGTGGAAGAATTCATGGAGATGCCAT
ACAATGCCACGAATGCCGAAGTGTTGGCGCATTATCAGGCCGACCCCGCC
ACGGGGCTCTCGCACGCGGAGGTCGAGACCCGTCGGCATCATTTCGGTCG
GAACGCCTTGAAAGGCCGACGCTCGGTTCACCCCCTCGTCTTGCTCCTCC
AACACCTCCTGAATGTGATGTCCTTGATCCTTTTTGTGGCCGTCGCCCTC
GCCTTGGCGGTGCAGGAGTGGATCGAGGCAGGGGTGATTGGCTTCATCAT
CGTCTTGAACACCGTCGTTGGTTTCGCCCAGGAGTATAGTTCAGAGAAGA
CCATGCAGGCCTTACGACGACTGAGTTCCCCCTTGGCGCGCGTGATCCGA
GAAGGGCGATCGGAGGAGGATGAATAG
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protein sequence of rna10224

>rna10224-protein ID=rna10224-protein|Name=rna10224|organism=Nannochloropsis gaditana|type=polypeptide|length=80bp
MMVIASGKSEPCINQLLDSTNNVQIDVRMEIMGSLLGKSLIRDQPTEYFR
PLEMTMNCVQLGKTLSRIISYCLAYTSREH
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mRNA from alignment at KK037266.1:52442..52953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10224 ID=rna10224|Name=rna10224|organism=Nannochloropsis gaditana|type=mRNA|length=512bp|location=Sequence derived from alignment at KK037266.1:52442..52953- (Nannochloropsis gaditana)
ATGATGGTGATAGCCTCTGGAAAGTAAACCACTGAACTATCCCATCCATC
CCCCATAGACCCTTCAATGCAACAGTGATTGAATCCTCAGACGCGAAGAA
GATATTGTCGAGTTGACGCGTGCAAGGGCAAGGAAAACCACGCAAAAGTA
CGAAAGAATAACGAAAAAGGTGTTAAATATTGGACTTGGCGACAGTCACC
GACGATCCTCATCCCTCGCTGCCTATTGTTGCCAAAAGAAGGTCAGAACC
CTGCATAAACCAGTTGTTGGATTCTACGAATAACGTACAGATAGATGTAA
GGATGGAGATGTGGCGTCCGGCATGGATTTTATAAAATGTCGTAGCATTT
ATCGGACTGAGCATGGGCAGCCTTCTTGGAAAGAGCTTAATTCGAGATCA
ACCTACTGAGTATTTTCGACCTTTGGAGATGACCATGAATTGCGTGCAGC
TAGGAAAAACCTTGTCACGCATAATTTCTTATTGTCTGGCGTATACATCT
AGAGAACACTAA
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Coding sequence (CDS) from alignment at KK037266.1:52442..52953-

>rna10224 ID=rna10224|Name=rna10224|organism=Nannochloropsis gaditana|type=CDS|length=729bp|location=Sequence derived from alignment at KK037266.1:52442..52953- (Nannochloropsis gaditana)
CATGGGCAGCCTTCTTGGAAAGAGCTTAATTCGAGATCAACCTACTGAGT
ATTTTCGACCTTTGGAGATGACCATGAATTGCGTGCAGCTAGGAAAAACC
TTGTCACGCATAATTTCTTATTGTCTGGCGTATACATCTAGAGAACACTA
AGTCAGAACCCTGCATAAACCAGTTGTTGGATTCTACGAATAACGTACAG
ATAGATGTAAGGATGGAGATATGATGGTGATAGCCTCTGGAAACATGGGC
AGCCTTCTTGGAAAGAGCTTAATTCGAGATCAACCTACTGAGTATTTTCG
ACCTTTGGAGATGACCATGAATTGCGTGCAGCTAGGAAAAACCTTGTCAC
GCATAATTTCTTATTGTCTGGCGTATACATCTAGAGAACACTAAGTCAGA
ACCCTGCATAAACCAGTTGTTGGATTCTACGAATAACGTACAGATAGATG
TAAGGATGGAGATATGATGGTGATAGCCTCTGGAAACATGGGCAGCCTTC
TTGGAAAGAGCTTAATTCGAGATCAACCTACTGAGTATTTTCGACCTTTG
GAGATGACCATGAATTGCGTGCAGCTAGGAAAAACCTTGTCACGCATAAT
TTCTTATTGTCTGGCGTATACATCTAGAGAACACTAAGTCAGAACCCTGC
ATAAACCAGTTGTTGGATTCTACGAATAACGTACAGATAGATGTAAGGAT
GGAGATATGATGGTGATAGCCTCTGGAAA
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Synonyms
Publications