rna10222, rna10222 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10222
Unique Name	rna10222
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	258
Alignment location	KK037266.1:49312..50366 +

Link to JBrowse

Properties


Property Name	Value
Product	lpxtg-motif cell wall anchor domain protein
Orig transcript id	gnl\|cribi\|Naga_100574g3.8362.mrna
Orig protein id	gnl\|cribi\|Naga_100574g3.8362
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037266.1	supercontig	KK037266.1:49312..50366 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100574g3	gene9926	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10222	rna10222-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20483.1	cds10191	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037266.1:49312..50366+
coding sequence from alignment at KK037266.1:49312..50366+

mRNA sequence

>rna10222 ID=rna10222|Name=rna10222|organism=Nannochloropsis gaditana|type=mRNA|length=258bp
ATGTCTTCCGACGATGTCTTTTCTATAGTCATCATCTCGTACTCTCCCAA
TCGAAACGGAAAAGGACAGAGAGATACCGGTCACAAGAATTATAAGCATT
GGAAAAATATCAAGTTATTTTCGATCATGGGTGACGGTAGCTGGCTGCAT
TTACTCATGAACTTGTCTACAGGGAGTCGTGCGAAGTTATTGAAGGAAAA
TAAGAGGCCAAAGTTAAATACTAAGTTGAAAGATTTCATTTCTAGTATAC
TCGCTTAA

protein sequence of rna10222

>rna10222-protein ID=rna10222-protein|Name=rna10222|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
MSPTADPTPDASTTAPSPRPTVTPALTPTKQPTVGPTVAPTMQPTVAPTM
APTIQPTAAQTVAPTMQPTVAPTMAPTMQPTAAPTVAPTMQPTAAPTMVP
AMQPTAAPTMVPTMQPTAAPTMVPTMQPTAAPTMAPTMQPTAAPTMAPTM
QPTAAPTMVPTMQPTAAPTVAPTIQPTAAPTMVPTMQPTAAPTMVPTMQP
TAAPTMVPTMQPTAAPTVAPTMQPTAAPTMAPTMRPTAAPTMVPTMRPTA
FPTMAPTLLPTEPPSSDT

mRNA from alignment at KK037266.1:49312..50366+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10222 ID=rna10222|Name=rna10222|organism=Nannochloropsis gaditana|type=mRNA|length=1055bp|location=Sequence derived from alignment at KK037266.1:49312..50366+ (Nannochloropsis gaditana)
ATGTCTCCTACCGCTGATCCAACCCCTGATGCATCGACGACAGCTCCTAG
TCCACGACCAACCGTGACTCCGGCCCTGACTCCTACCAAACAACCCACAG
TAGGTCCAACGGTGGCTCCCACAATGCAGCCGACGGTAGCCCCAACCATG
GCACCTACAATACAGCCAACGGCAGCTCAGACGGTGGCCCCCACAATGCA
GCCGACGGTTGCCCCAACCATGGCGCCTACAATGCAGCCCACGGCAGCCC
CGACGGTGGCACCTACGATGCAGCCGACTGCAGCTCCAACCATGGTTCCT
GCGATGCAGCCCACGGCAGCTCCAACCATGGTACCTACGATGCAGCCGAC
GGCAGCTCCGACGATGGTACCTACGATGCAGCCGACGGCAGCCCCAACCA
TGGCACCTACGATGCAGCCGACGGCAGCTCCAACCATGGCACCTACAATG
CAGCCCACGGCAGCTCCAACCATGGTACCTACGATGCAGCCAACCGCAGC
TCCGACGGTGGCTCCCACAATTCAGCCCACGGCAGCCCCGACCATGGTAC
CTACAATGCAGCCGACGGCAGCTCCAACCATGGTACCTACGATGCAGCCG
ACGGCAGCTCCAACCATGGTACCTACGATGCAGCCAACGGCAGCTCCGAC
GGTGGCTCCCACAATGCAGCCGACGGCAGCTCCAACCATGGCACCTACGA
TGCGGCCGACGGCAGCTCCGACCATGGTACCTACGATGCGGCCGACGGCA
TTTCCTACCATGGCACCCACTTTGCTACCCACTGAACCTCCCTCATCAGA
TGTAACATGCACCGGTGATATAGTTGGTGGGATTTTCATGTATCGCTGCG
GCCCGTATGTTGCCTGCGCATTTTCGGACGAAATTTCGGCTTCAGATGCC
GAAGACTGCGCGAAAGATTGTGTGACTGGTTTAAGAGCTTATATTTCAAG
TTTCAACACTTCGGATTCTACCTGCAGATGCACGACACAGGCACAATATG
ACACGTCACGTATCACTTCCTCTGAAGACAATATTCTTTTCTCGCTAAGA
CCTGA

Coding sequence (CDS) from alignment at KK037266.1:49312..50366+

>rna10222 ID=rna10222|Name=rna10222|organism=Nannochloropsis gaditana|type=CDS|length=1614bp|location=Sequence derived from alignment at KK037266.1:49312..50366+ (Nannochloropsis gaditana)
ATGTCTCCTACCGCTGATCCAACCCCTGATGCATCGACGACAGCTCCTAG
TCCACGACCAACCGTGACTCCGGCCCTGACTCCTACCAAACAACCCACAG
TAGGTCCAACGGTGGCTCCCACAATGCAGCCGACGGTAGCCCCAACCATG
GCACCTACAATACAGCCAACGGCAGCTCAGACGGTGGCCCCCACAATGCA
GCCGACGGTTGCCCCAACCATGGCGCCTACAATGCAGCCCACGGCAGCCC
CGACGGTGGCACCTACGATGCAGCCGACTGCAGCTCCAACCATGGTTCCT
GCGATGCAGCCCACGGCAGCTCCAACCATGGTACCTACGATGCAGCCGAC
GGCAGCTCCGACGATGGTACCTACGATGCAGCCGACGGCAGCCCCAACCA
TGGCACCTACGATGCAGCCGACGGCAGCTCCAACCATGGCACCTACAATG
CAGCCCACGGCAGCTCCAACCATGGTACCTACGATGCAGCCAACCGCAGC
TCCGACGGTGGCTCCCACAATTCAGCCCACGGCAGCCCCGACCATGGTAC
CTACAATGCAGCCGACGGCAGCTCCAACCATGGTACCTACGATGCAGCCG
ACGGCAGCTCCAACCATGGTACCTACGATGCAGCCAACGGCAGCTCCGAC
GGTGGCTCCCACAATGCAGCCGACGGCAGCTCCAACCATGGCACCTACGA
TGCGGCCGACGGCAGCTCCGACCATGGTACCTACGATGCGGCCGACGGCA
TTTCCTACCATGGCACCCACTTTGCTACCCACTGAACCTCCCTCATCAGA
TACCTGAATGTCTCCTACCGCTGATCCAACCCCTGATGCATCGACGACAG
CTCCTAGTCCACGACCAACCGTGACTCCGGCCCTGACTCCTACCAAACAA
CCCACAGTAGGTCCAACGGTGGCTCCCACAATGCAGCCGACGGTAGCCCC
AACCATGGCACCTACAATACAGCCAACGGCAGCTCAGACGGTGGCCCCCA
CAATGCAGCCGACGGTTGCCCCAACCATGGCGCCTACAATGCAGCCCACG
GCAGCCCCGACGGTGGCACCTACGATGCAGCCGACTGCAGCTCCAACCAT
GGTTCCTGCGATGCAGCCCACGGCAGCTCCAACCATGGTACCTACGATGC
AGCCGACGGCAGCTCCGACGATGGTACCTACGATGCAGCCGACGGCAGCC
CCAACCATGGCACCTACGATGCAGCCGACGGCAGCTCCAACCATGGCACC
TACAATGCAGCCCACGGCAGCTCCAACCATGGTACCTACGATGCAGCCAA
CCGCAGCTCCGACGGTGGCTCCCACAATTCAGCCCACGGCAGCCCCGACC
ATGGTACCTACAATGCAGCCGACGGCAGCTCCAACCATGGTACCTACGAT
GCAGCCGACGGCAGCTCCAACCATGGTACCTACGATGCAGCCAACGGCAG
CTCCGACGGTGGCTCCCACAATGCAGCCGACGGCAGCTCCAACCATGGCA
CCTACGATGCGGCCGACGGCAGCTCCGACCATGGTACCTACGATGCGGCC
GACGGCATTTCCTACCATGGCACCCACTTTGCTACCCACTGAACCTCCCT
CATCAGATACCTGA

Synonyms

Publications