rna10214, rna10214 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10214
Unique Name	rna10214
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1524
Alignment location	KK037266.1:21410..22577 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100382g2.7174.mrna
Orig protein id	gnl\|cribi\|Naga_100382g2.7174
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037266.1	supercontig	KK037266.1:21410..22577 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100382g2	gene9917	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20488.1	cds10183	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10214	rna10214-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037266.1:21410..22577-
coding sequence from alignment at KK037266.1:21410..22577-

mRNA sequence

>rna10214 ID=rna10214|Name=rna10214|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp
TGTCCGGGTATTCTTTCCCGACATTGGGGAGACGCCGCAGAAAAGTCCCA
CTCCCGAGCTCATGGATTGCTCCCTGACCGCTGCCAGCATCTGGCATCAG
TTGACGGAAGTCTGGTTCGTCGCCCACGCTCTGGGCTGGTGGGGGAAAAT
GGTCATGTTCCGTGACTGGGGCGTGTGCTGGATCCTCTCCTTGGGTTTTG
AAGTTTTGGAGTGCACCCTCCAATTCTTGATCCCGGAGTTCAAAGAATGC
TGGTGGGACAGCCTGTTGATCGACGTTTTGGGCGCGAATTTGCTGGGGAT
GGGCGCTGGGTGGCTGACGTTACAGGCCTTGGAGACCCACGCCTTCGACT
GGTCAGGGACGCAGGACCAACGGGTGGGGCGGGCTCGACGCCTTATTCAG
CGCCTTTCGCCATATTCCTTCACGCGCTACCGCTGGTCGATGTTTTCCTC
CTTCAAGCGTTTCCTACAGGTCATCGTCCTCCTCCTTGTCACTCTTTTGA
TGGAGCTGAACGCCTTCATGCTTCTTCACACGCTGCAGATCCCCAAAAAT
TCGGCTTTCAACAAAATCCGCCTCAGCCTCGTCGCCCTCCTTGCCTTCCC
TGCAGCTGCCGAGTACTACGATTTCATCGCAAATCCATATCAGTCAAGAT
TGGGGCCCAACGCCTGGTGCATGATGGCGGTCATGCAGCTCGAGGTGGTG
GTTTGGCTAAAGTTCTGGCCCTCCACCTTCCTCATCAGAACCCCGCCGCC
TGAGATCGGCTACCCTTGGCTAGCCACCCTACTTCTACTTGGCCTCTGGA
TGCTCCTGTCCTTGACCTTGGTCAAAGAGCAGGACCTCGGCCGCCGCCTG
CTGGGGTCGGGGGGGAGGAATGGGAAAAAGCACAACGGAGGGCGAGGAGA
GCGGCGGAGAAAGTCGAAGGGAGAGAAGGAAGAAGAAGAGGAAGAAGAGG
AGGGAGAGGAGGGAGAGGAGGAGGAGGAGGCTTTAAATGGTGGTAAAGAA
AAGAGAGCGGAAGGTCTGGGAAATTTGACCGGCAAGGAGGTCACCGTGGG
CGTGGTGCAAGAAATAGTTGACATGGTCTTCTTCCTTTCCTTCCTCCCAC
TCTTGTATTTGATACGGCAATGGGTTTTCTAGCCCGCCTCTAAGACCAGG
AGAAATGGTAGGAAAGTCATCAAGTGGAGACGCCGTGTAGCAAGCCTATG
TAAGAAAAATGAATCGCAATTGTTTGGATTGCGCTTGGAGGTGCTGCTCG
TTAGGACTCTCATGATTGGCCTGGAGGATGCCAGGATCGCGTCATGCGAC
AAGGGAGAGAAAGAGATGCCCAAATAGAGGACGACGGGATGGAAAGAAAT
CGAGGGTTAGAAAAAAGCGAGGGTGAGTGAAAAAGGGTTGTATGTAAAGA
GAAGAGTGACACAGTGGCTGGTGCAAGTCTATTCAGAGGTAGGCGAGGAA
ATGCAATGAGCATTCCCATATCACACCTAGGCGCATTCATTGAAAAGAAA
TAGAAAAAGTAGATTTGGAGTGTG

protein sequence of rna10214

>rna10214-protein ID=rna10214-protein|Name=rna10214|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MPGMGRDQAGQSPFPGIAVGAFPCIWPQNGTTSPKIAVPVHARHASSGPT
ERFRQTDPPEAYGSEDAFTPFLSSFALFMATATSCVDAYGSMPGANCSNV
LWATLGVSPMQRSASE

mRNA from alignment at KK037266.1:21410..22577-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10214 ID=rna10214|Name=rna10214|organism=Nannochloropsis gaditana|type=mRNA|length=1168bp|location=Sequence derived from alignment at KK037266.1:21410..22577- (Nannochloropsis gaditana)
GTGACCATATTGTTTGCTACATCGCCAATCTATCATGAATGGATTTGTCT
GGCCGAATTGTTTCAAATTCTGTATACAGCATAGCTAGGATGGCTTTCAA
GAGCTCATACTTCTCAACACCACCCTCTAAACCAGGACAAGAAATGTTTT
TCCGGAACACACGCCAATGCCTAGATCCTTAGCCGCCGTTAGTCGTCCAC
ATCGCCGCAGCAGCGACAACGAGGCTGAAGTGCATGGTTTTGAGGCGCTT
GTGGAGGCTGCCTGTGGTATCAGTGCAGAATCGCTAATAGAAAAATAACT
TTACTCGTTGAAGGTGCTGTCAAGCCCCCCTTGTTGTCAAGGTAGCTCCC
GGCTGAAGGCAACCTTTGAACGTCGATCTATTTGGCGCCGAAGGTATTTC
CCGAGAAGTACCGATCTACGACAAATCAACAAGCACACATGCCTGGCATG
GGCAGAGATCAGGCGGGACAATCCCCGTTTCCAGGTATAGCAGTAGGTGC
CTTTCCCTGTATTTGGCCGCAAAATGGCACGACGTCCCCTAAGATTGCCG
TGCCTGTCCACGCACGACACGCTTCCTCTGGACCCACCGAGAGGTTCAGG
CAGACAGACCCTCCCGAAGCCTATGGAAGTGAGGACGCATTTACACCGTT
CCTGTCCTCCTTTGCTCTGTTTATGGCCACCGCGACATCCTGCGTCGATG
CCTACGGGTCTATGCCCGGAGCAAATTGCTCTAACGTCTTATGGGCCACG
CTAGGAGTCAGTCCCATGCAGAGATCGGCCTCTGAATGAAAAACTTCCTT
CTCAATCTACATACCATCATGGTTCCGTGATCATGCCCAGTAAGTTGGAT
CTTCTCCACACCACACAATGCAGCGTGGCATCGGGGTGAGGAGCGTCATT
CCCAATGGCAAGGACAAGGGATCTTCGTTTCAGCGACCAAGGTGATATGC
AGGATAATGCGTGGATCGATGGAAGGGATCATTGTTATCTATAGCCATTG
GCAATATTTGGGCTCCTCCCGCCTCATACCAACCGTGCCTATCGAGAGGG
CACACTCGAGGTTTGCCAGTGTAATGACTACGTATGGCGGGCGGTGTTAG
GAATACTGAAGCCGGAAGGTATTAGCAAGTAAATGTACAGCAGCTTTAAC
AAGGACATTTCAAGAGCT

Coding sequence (CDS) from alignment at KK037266.1:21410..22577-

>rna10214 ID=rna10214|Name=rna10214|organism=Nannochloropsis gaditana|type=CDS|length=351bp|location=Sequence derived from alignment at KK037266.1:21410..22577- (Nannochloropsis gaditana)
ATGCCTGGCATGGGCAGAGATCAGGCGGGACAATCCCCGTTTCCAGGTAT
AGCAGTAGGTGCCTTTCCCTGTATTTGGCCGCAAAATGGCACGACGTCCC
CTAAGATTGCCGTGCCTGTCCACGCACGACACGCTTCCTCTGGACCCACC
GAGAGGTTCAGGCAGACAGACCCTCCCGAAGCCTATGGAAGTGAGGACGC
ATTTACACCGTTCCTGTCCTCCTTTGCTCTGTTTATGGCCACCGCGACAT
CCTGCGTCGATGCCTACGGGTCTATGCCCGGAGCAAATTGCTCTAACGTC
TTATGGGCCACGCTAGGAGTCAGTCCCATGCAGAGATCGGCCTCTGAATG
A

Synonyms

Publications