rna10211, rna10211 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10211
Unique Name	rna10211
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	666
Alignment location	KK037266.1:11478..12029 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100371g1.368.mrna
Orig protein id	gnl\|cribi\|Naga_100371g1.368
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037266.1	supercontig	KK037266.1:11478..12029 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100371g1	gene9914	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20494.1	cds10180	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10211	rna10211-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037266.1:11478..12029-
coding sequence from alignment at KK037266.1:11478..12029-

mRNA sequence

>rna10211 ID=rna10211|Name=rna10211|organism=Nannochloropsis gaditana|type=mRNA|length=666bp
ATGCGCCAAGAAGCCTCAGGACTCTTTCAGGCGGGCGTTTTCTACCCGTC
CTTTGCCTACCGAGGGGACGAACGCCTGGAGAAGAAGAACGTGTGGAATT
TCGAGCTGGACGGCCACGAATGGGACTACGCGCCTTCCCTCCTCATGTAC
ACTCGTGAAATCCTCCTGCATCTTCCTCCCCTCCTCAACAGCCTCTCCCT
TCCCTTGCCCGTCCCTCCCTCCCGCTCTCCCTCCCGCCCTCCCTCCCTCC
TTCGCCTCAGCCCGCGGGGCTATGCCAACAAGATCGCCGTCAGTACTGGG
GGAGGCTCTCATTTCTTGCGGCACACCGACAATAACAACGGGGACTCGAG
GAAGGTGACCCTCGTATACTACCTTAATCCAGAATGGCCGTCCGGGAATG
GCGGACAGCTGCGGCTTTATCCTCGAAGTGGGGCATACGGACAAGAGGAA
GGCTTAAAGAATACAAGCGGGGGGGAAGGAACGGAGGCGGATGGAGGGGA
GGAAGGCCATGTTGACGTATGGCCGGAGGGAGATACCCTTGTCATGTTTC
TGAGCGAGGAGCTAGAGCATGAGGTGCTTCCAAACTGGAGCGAGGAGGAG
AAGGATCATCGATGGACATACACACTGTGGCTAGTAGAAGAGGGAGGCTG
TGAAGGGGAGTCTTGA

protein sequence of rna10211

>rna10211-protein ID=rna10211-protein|Name=rna10211|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MLPKSAGHSVMKRAGYPAKRIVTTHGERTAAGVSLVVRALFAVSRPETRS
NAGVVGAFDGRRQHRRRSFPSGQDLCPSLPSHRMLRKRARGGVSSQLVCG
RPVLASFFSSSSSSSSSSSSSSSFSSSSTPRNAADEARRTFFAQLGFGNV
VAARLQAEKEAIKVSDEEGDIEEGGADGRHASP

mRNA from alignment at KK037266.1:11478..12029-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10211 ID=rna10211|Name=rna10211|organism=Nannochloropsis gaditana|type=mRNA|length=552bp|location=Sequence derived from alignment at KK037266.1:11478..12029- (Nannochloropsis gaditana)
ATGCTGCCCAAGAGCGCCGGTCACTCGGTGATGAAAAGGGCAGGATATCC
AGCGAAAAGGATAGTCACGACACACGGAGAGAGGACCGCAGCTGGCGTTA
GCTTGGTCGTGCGAGCTTTGTTTGCTGTTTCACGACCAGAAACACGGAGT
AATGCCGGGGTGGTGGGTGCTTTTGACGGACGAAGACAGCACAGGCGACG
GAGTTTCCCTTCAGGGCAGGATTTATGTCCGTCTCTCCCGTCACATAGAA
TGCTGAGAAAGCGTGCTCGTGGCGGCGTTTCTTCCCAACTCGTTTGCGGT
CGCCCCGTGCTCGCATCTTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCTTCCTTTTCCTCTTCCTCAACCCCGCGAAATGCGG
CGGACGAAGCCAGACGGACGTTCTTTGCACAGTTGGGCTTTGGGAACGTG
GTGGCGGCACGATTGCAGGCAGAAAAAGAGGCGATAAAGGTGAGTGATGA
GGAGGGCGATATCGAGGAAGGGGGGGCAGATGGACGGCACGCATCTCCCT
GA

Coding sequence (CDS) from alignment at KK037266.1:11478..12029-

>rna10211 ID=rna10211|Name=rna10211|organism=Nannochloropsis gaditana|type=CDS|length=552bp|location=Sequence derived from alignment at KK037266.1:11478..12029- (Nannochloropsis gaditana)
ATGCTGCCCAAGAGCGCCGGTCACTCGGTGATGAAAAGGGCAGGATATCC
AGCGAAAAGGATAGTCACGACACACGGAGAGAGGACCGCAGCTGGCGTTA
GCTTGGTCGTGCGAGCTTTGTTTGCTGTTTCACGACCAGAAACACGGAGT
AATGCCGGGGTGGTGGGTGCTTTTGACGGACGAAGACAGCACAGGCGACG
GAGTTTCCCTTCAGGGCAGGATTTATGTCCGTCTCTCCCGTCACATAGAA
TGCTGAGAAAGCGTGCTCGTGGCGGCGTTTCTTCCCAACTCGTTTGCGGT
CGCCCCGTGCTCGCATCTTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCTTCCTTTTCCTCTTCCTCAACCCCGCGAAATGCGG
CGGACGAAGCCAGACGGACGTTCTTTGCACAGTTGGGCTTTGGGAACGTG
GTGGCGGCACGATTGCAGGCAGAAAAAGAGGCGATAAAGGTGAGTGATGA
GGAGGGCGATATCGAGGAAGGGGGGGCAGATGGACGGCACGCATCTCCCT
GA

Synonyms

Publications