rna1020, rna1020 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1020
Unique Name	rna1020
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2978
Alignment location	CM002456.1:984573..985841 +

Link to JBrowse

Properties


Property Name	Value
Product	3-dehydroquinate synthase
Orig transcript id	gnl\|cribi\|Naga_100050g41.6861.mrna
Orig protein id	gnl\|cribi\|Naga_100050g41.6861
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:984573..985841 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100050g41	gene983	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1020	rna1020-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29638.1	cds1019	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:984573..985841+
coding sequence from alignment at CM002456.1:984573..985841+

mRNA sequence

>rna1020 ID=rna1020|Name=rna1020|organism=Nannochloropsis gaditana|type=mRNA|length=2978bp
ATTCTTCTCGGCCTGTACTCGTCGCGCGTGAGACCAGAGTTGGTCGCGGC
CAGGCTTCAGCAACACGGCATCTACTCCTGTCTCCAACGCGAACGCCACG
CCGGAAAGCTGCTCCGCGTCTTCTACCGCCACGCATACTCGGGTCGGCCC
GCCTTGGGCTGCAGCGATGACGTTTTCGCATGGTATTTGGATCCAGTCGA
TGAATGCATCGAGCACGACCCAGTCAACACTACCAATAAGGTTGATAGCC
TTCGTCACGTCCTCCGGCTTGGTGATGGCCAACACTGCTCCCACCAACCT
CTCATGATCGTCCTGGAGGCGACCTGTCGCCTCCTCCTCTACAAGGAAAG
GAACGTCTAAAGGTTCAGTGGGAGCGTGATGGGTCAAACAGCGGCTCGCT
CCCAGAGGAATGAATGCCTTGGTATTTCTCACGTCCACCCACAGCTCCAA
AGATGTCATCTGAACCTGGTTGCGCGGGCGCGAGCCACGGCCGCAACTGT
GCACCGGTGGCGGGTGCGTGACCTTTGAGGAGGTAGAGTGACTCCACGAG
AAAGCAGAGTACTGCAACAGCTGAAAGACGAGAAGGAGCCTCCAGCAGAA
AAGGGGCATATCGCAGCAACCTCCCCCCCGCTAGCGCAATTTGTCACGTC
CGGTGCCTTTGCACGAAGAGTTCCTCCGAGCCATTCAAGAGGGGCGGCAT
GCGGTCAGTCTCCTCAGCATGAAGCGTGCTGCAGTGTTGATAAATGAAAC
ATGGTCAGAAATGTGCCCTGGCAATTCGGCCTTCCAAAAAGAGGCGGCAC
CGCCGTCTCTCTCAAGAAAGGGAAACACGATGCCAGCGATTTGCCCGCCT
CGAGACAGGACCTTCGCTTCTGTTGCTACGCGCCGCGACGTGTCGCCCCA
CTCATCGCATCCCACACACGTTCAGGTACTCTCTGTAGTCAGGTGGCTGC
AGAGACGCATCATGGGGACCGGCCGTGTGGCCGTGGCCTTTCTCTTGGCA
GGTGTTCTCGCGGGAAGGGCACTTGGAATCAGTGATCTTCCCCCTCTTCC
CGCCGCCTCCCACCCTCCCTCCTCCTACGCCGCCTCCACCATGGACCCCG
CCTCGATATCACGATTATTGGCAAGGCGGGGTGGCATTAAGATCCGAGCA
GAGCCTGTGATTGAATCGGAGGCCTCCAGAATACGGGTGAGTTCCTTGTT
GGACGCGGGAAAGGGCGGAACGGACCATCTACTAGCGACATGATCGGGAA
CAGTGAGGCGATGACCCCGTTTCGAAGGAACCTTAAAATTTTGTTGCACG
TACGAACAGACACGTAAAAGTAGCGACTCAGATTCAAAAAGTGGCGCCAC
GAAAAGTGGGGGTGGAAACGAGCGGATGGAGGAAGACGAGGACCTGGTAG
GGGCTGCTCGCGTGAGCTATGGTAGCGATGGCCAAAAGGGTTTGAGGATG
GATGTAGACTTGGACGTGAATGAGCTAACAAGCCACTTGGGACCCGCAGC
AAAGCCATTGGTTGCCGTGGCCCGCGCCATTCAGTCGACGATCTTCTACA
CGGCGCCAGTTCTTGCCCTGGCCGGCCTCCTGACTCAAATAGCGGGCATT
ACGTGCTCCCGGTATACGAAAACGCAGGCGGACAAGAAAAGCAACAAGCA
GGGCAAGGCTTCAAGGACGAGGGACCCGAAGAAGTCCACCGTCAAGGAGG
AGCAAGTCAGGCGGGACGCTAAGCAACGGCAAGACCGACTTGAGAAGGAG
GAAAAGCGACGACAGTCAAAAGAGCAAGACCAGCGGCAGCGGCGAGAAGC
CAAAGGCAAGATGCTAGCCAAAGCGAAGAAGCCTCACGCATCTTCCACGT
CGATTTGGGGCTATCTGAAGCGGGCCTTTTCCTCTATCTCCCCGGGGAAG
AGCAAGGACAACAAGCTGGCTTTCGTCACCAGGACCAAGGGGGGAGCTCT
CCTCGGCTGGAACACCGGCGGGCCGTCCACGAGGAAGAGCAAAGACGGCG
AGATCCTGGACTGGAATGCCTTCACGGTCCTCTCGCTCCGTGCAGCGTGC
CAGTGGGCTCTGCTGGTGGCGGTGGCTGCTGCGGTGGGGCGTGGGGTGGA
GGCGGCGGGCGCCAGCCGAAAGCTGAATCCCCGGCTTCTCATTTCCCTGG
ACGTCTTCACGGCCTCCTCCGCCGTCTTCCTCAGCGAGAAGGTTGGCTTC
CTCCGCACCCAGATGGACATGGGCTGGTACCACCGGGTCCTGAAGAAGCC
CACGTGGACCCCCCGCCCCATCGTCTTCCCTCTCGTTTGGGTCCCCTTGA
AGCTCCTTCAGACCGCCGCCTTGGTCCTGGTCTGGCGCCTGCTCGATCGC
GACGCCCTGAATGTGCCCGTCGTGCTCTTCTTGCTGCACCTGACCCTGGG
GGACCTCTGGAACCTGGTCTTCTTCGGGGAGAAGAGAATAGGCTTCGGGC
TCAGCGTCATGTACGCTTTCTACGCCTCCCTGGCCGCCTCCTGTTACGCC
TTCTACAGCGTGCTGCCTCGGGCCGCCTATCTTATGGTGCCGACCGCAGT
GTGGGTGTTCATCGCCACCTCTCTGAACTACTCGATCTGGCTCTTGAACG
GCACGCCCACGCGCTTCCCGACCAAGAAGGGTTAGGGGAAGGGAAAGCCG
AGAGGAGGGATTGGTAAAGAGAGAGAGGATGGCAGGCATGGGAGGAAGGA
AAAGGGGGACATGGAGGGAGGGCAAAGCAGCGCCCTGCTGCTGGAAGGGG
CGAGGAGCCGGAGTCATGCATCCCACCAGCCGACGTAATTTCCCGGCAGG
AGCAGCACGACGTCCGAGGAGGCTTGCGCCCCAGGCGACGCAATTTACCT
TTCTATACATACATGCCAGGTCCTAACACAGCCCAAAGGCTGCAGACTGA
GCCTTCGAACCTCGCCAGGGGGCATTTGCGGTTTGAGACAGAAAATGGAA
AGAAAAGTAGACGTAAGAAAGTGACAGC

protein sequence of rna1020

>rna1020-protein ID=rna1020-protein|Name=rna1020|organism=Nannochloropsis gaditana|type=polypeptide|length=422bp
MPLFCWRLLLVFQLLQYSAFSWSHSTSSKVTHPPPVHSCGRGSRPRNQVQ
MTSLELWVDVRNTKAFIPLGASRCLTHHAPTEPLDVPFLVEEEATGRLQD
DHERLVGAVLAITKPEDVTKAINLIGSVDWVVLDAFIDWIQIPCENVIAA
AQGGPTRVCVAVEDAEQLSGVAFALETGVDAVLLKPGRDQLWSHARRVQA
EKNEKILPASEGSGAQTVFPSAVGKEQEHVQLVPAKVAEVVPGGVGDRVC
LDLVQLLKVGEGCLVGSSAKGLILVQAEVLATTYINPRPFRINAGPVHSY
VLMEDGSAKYLSEIEAGDRVRVVSADGHSRGVTVGRCKIESRPLLKVSFQ
WPAGGEGGNEGGTRTAQIFLQQAETVCLVRGTAEGGGCTSVTRLRAGDMV
VVRARSQGTHLGNAIKAHVEEK

mRNA from alignment at CM002456.1:984573..985841+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1020 ID=rna1020|Name=rna1020|organism=Nannochloropsis gaditana|type=mRNA|length=1269bp|location=Sequence derived from alignment at CM002456.1:984573..985841+ (Nannochloropsis gaditana)
ATGCCCCTTTTCTGCTGGAggctccttctcgtctttcAGCTGTTGCAGTA
CTCTGCTTTCTCGTGGAGTCACTCTACCTCCTCAAAGGTCACGCACCCGC
CACCGGTGCACAGTTGCGGCCGTGGCTCGCGCCCGCGCAACCAGGTTCAG
ATGACATCTTTGGAGCTGTGGGTGGACGTGAGAAATACCAAGGCATTCAT
TCCTCTGGGAGCGAGCCGCTGTTTGACCCATCACGCTCCCACTGAACCTT
TAGACGTTCCTTTCCttgtagaggaggaggcgacaggTCGCCTCCAGGAC
GATCATGAGAGGTTGGTGGGAGCAGTGTTGGCCATCACCAAGCCGGAGGA
CGTGACGAAGGCTATCAACCTTATTGGTAGTGTTGACTGGGTCGTGCTCG
ATGCATTCATCGACTGGATCCAAATACCATGCGAAAACGTCATCGCTGCA
GCCCAAGGCGGGCCGACCCGAGTATGCGTGGCGGTAGAAGACGCGGAGCA
GCTTTCCGGCGTGGCGTTCGCGTTGGAGACAGGAGTAGATGCCGTGTTGC
TGAAGCCTGGCCGCGACCAACTCTGGTCTCACGCGCGACGAGTACAGGCC
GAGAAGAATGAAAAAATTCTGCCGGCCTCGGAAGGCTCAGGTGCCCAAAC
CGTCTTCCCTAGCGCGGTAGGAAAGGAGCAAGAGCACGTGCAGCTCGTGC
CTGCCAAAGTGGCGGAGGTCGTGCcggggggcgtgggcgaCAGGGTCTGC
TTGGACCTGGTGCAGCTTCTCAAGGTCGGGGAAGGCTGTCTTGTGGGTTC
GTCGGCCAAGGGACTGATCCTGGTGCAAGCCGAGGTCCTGGCGACCACCT
ACATAAACCCTCGGCCCTTCCGGATCAACGCCGGGCCCGTGCACTCCTAC
GTGTtgatggaggatgggagcgCCAAGTACCTGTCCGAGATCGAAGCGGG
AGACCGAGTCAGAGTGGTCAGTGCGGACGGGCACTCACGGGGAGTGACGG
TGGGCCGCTGCAAGATTGAAAGCCGACCGCTCTTGAAGGTGTCGTTTCAA
TGGCCGGctgggggcgagggcgggaacgagggagggacgcgaaCAGCGCA
GATCTTTTTGCAGCAGGCAGAGACAGTCTGTCTGGTGCGCgggacggcgg
aggggggcggtTGCACGAGCGTGACGAGGCTGCGGGCAGGAGacatggtg
gtggtgagggcgCGGAGCCAGGGGACTCACCTGGGAAACGCCATAAAGGC
Tcatgtggaggagaaatga

Coding sequence (CDS) from alignment at CM002456.1:984573..985841+

>rna1020 ID=rna1020|Name=rna1020|organism=Nannochloropsis gaditana|type=CDS|length=1269bp|location=Sequence derived from alignment at CM002456.1:984573..985841+ (Nannochloropsis gaditana)
ATGCCCCTTTTCTGCTGGAggctccttctcgtctttcAGCTGTTGCAGTA
CTCTGCTTTCTCGTGGAGTCACTCTACCTCCTCAAAGGTCACGCACCCGC
CACCGGTGCACAGTTGCGGCCGTGGCTCGCGCCCGCGCAACCAGGTTCAG
ATGACATCTTTGGAGCTGTGGGTGGACGTGAGAAATACCAAGGCATTCAT
TCCTCTGGGAGCGAGCCGCTGTTTGACCCATCACGCTCCCACTGAACCTT
TAGACGTTCCTTTCCttgtagaggaggaggcgacaggTCGCCTCCAGGAC
GATCATGAGAGGTTGGTGGGAGCAGTGTTGGCCATCACCAAGCCGGAGGA
CGTGACGAAGGCTATCAACCTTATTGGTAGTGTTGACTGGGTCGTGCTCG
ATGCATTCATCGACTGGATCCAAATACCATGCGAAAACGTCATCGCTGCA
GCCCAAGGCGGGCCGACCCGAGTATGCGTGGCGGTAGAAGACGCGGAGCA
GCTTTCCGGCGTGGCGTTCGCGTTGGAGACAGGAGTAGATGCCGTGTTGC
TGAAGCCTGGCCGCGACCAACTCTGGTCTCACGCGCGACGAGTACAGGCC
GAGAAGAATGAAAAAATTCTGCCGGCCTCGGAAGGCTCAGGTGCCCAAAC
CGTCTTCCCTAGCGCGGTAGGAAAGGAGCAAGAGCACGTGCAGCTCGTGC
CTGCCAAAGTGGCGGAGGTCGTGCcggggggcgtgggcgaCAGGGTCTGC
TTGGACCTGGTGCAGCTTCTCAAGGTCGGGGAAGGCTGTCTTGTGGGTTC
GTCGGCCAAGGGACTGATCCTGGTGCAAGCCGAGGTCCTGGCGACCACCT
ACATAAACCCTCGGCCCTTCCGGATCAACGCCGGGCCCGTGCACTCCTAC
GTGTtgatggaggatgggagcgCCAAGTACCTGTCCGAGATCGAAGCGGG
AGACCGAGTCAGAGTGGTCAGTGCGGACGGGCACTCACGGGGAGTGACGG
TGGGCCGCTGCAAGATTGAAAGCCGACCGCTCTTGAAGGTGTCGTTTCAA
TGGCCGGctgggggcgagggcgggaacgagggagggacgcgaaCAGCGCA
GATCTTTTTGCAGCAGGCAGAGACAGTCTGTCTGGTGCGCgggacggcgg
aggggggcggtTGCACGAGCGTGACGAGGCTGCGGGCAGGAGacatggtg
gtggtgagggcgCGGAGCCAGGGGACTCACCTGGGAAACGCCATAAAGGC
Tcatgtggaggagaaatga

Synonyms

Publications