rna10175, rna10175 (mRNA) Nannochloropsis gaditana

Overview
Namerna10175
Unique Namerna10175
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1011
Alignment locationKK037264.1:52912..53968 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101670g3.458.mrna
Orig protein idgnl|cribi|Naga_101670g3.458
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:52912..53968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101670g3gene9878Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10175rna10175-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20528.1cds10144Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10175 ID=rna10175|Name=rna10175|organism=Nannochloropsis gaditana|type=mRNA|length=1011bp
CCCCCCTCCCTTGGCGACGCTTGCGCACTATATCCCTTAAAAACCATGGA
AACCGGTCCGCGCACCCGTTCCCTTGCCCCTCCGTCGTGGACACGACATG
CAATGTGCCATGGAATGCAGGAGCGGACGGCTTCCGAATCGGGCGGGACG
ATGGAGTCAAGCCATTGTCCTTAAAGGCATTCGTAGCTCTTATCAGAACC
CACAAGCCCCTTGGAATCTATAAAACATCGTGTTGACAAAACAAGCTACC
GGCTTGACAGAACATCTCTATGCCTGTAGGCGGGAACCAGATTTGCGACA
AGTATCATGCAAATATATGCGACGGACCGCAGAATTGTAATGAAAAGTTG
ACGTTTTTATAGCGTGCCTTGTTCACAATTGCCCTTTAAATCAATGCCGT
GATGACGGATATTTCTGGTACGTGTGCGACATATTCCACACGCTCTCTGC
ACGTGAAGTCCTGTTTGATGACATTAGACATTAGATGATACCTTTACAGG
GGCCGGTAGTTTTTTAAAGGTTGAAAGTGACATTTCAACACCGTGACATG
AAAGAATCTTCGCTCACGACCAGTAGATGCTTTTCTTGACACTGACCGAT
GCTAATAATTTTTATGGGAAATCTTTCTAGGCCTCACAAGAAGGCTATTC
GTCTTTTTAAAAACCTATGCGTGCGATAAGAAATAAAAGCTGCGAGTGGG
AAATGACCGTGCCAAAGGCCAGAGCATCTGAGAGAAAAAAGGAAAAAAGC
ACCACCCCTTGCCTTCGGCGCCCAGACAGCCTGATATGTCACAGTCCAAT
TCTTCAATTTCCTCTTTTAACTCATGCGGTAGTTCCTAAAATAACAGCCA
GTTGCGCGCAGTCTTGTGTTTCCTCGTCCCCACCCTCTGTCTCCTCCTTT
CCTTCCGTCTCACTCCAAAGCACCGTTTCCAGCGCACATACCTCCAGTAT
CACTCCCGCCCCCATTCCCTCCCTCCGTCCCTCTCTTTCCTCCCCTAAGC
CACGGACGTAG
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protein sequence of rna10175

>rna10175-protein ID=rna10175-protein|Name=rna10175|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MRRYYSVFDYEHERLGLAPARAPGSSSPMGKPPVPEAPRGAAGGRMMLPS
GVFPVMASNPPHRLTCSVPLVPFPPSSLQREAYSGGGGRRSSHCPGGLAA
RGELELAGKVGRDVVKGGKERTLMVGVEMVEKGVWRGGGRFVCLCTGSIL
TPRKRVCGGRLRVARHKKAGAEGGGGAEGERKGKGAGVGGSGSWEEPCRA
DVAAREGIEACSILVEQNSKKE
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mRNA from alignment at KK037264.1:52912..53968+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10175 ID=rna10175|Name=rna10175|organism=Nannochloropsis gaditana|type=mRNA|length=1057bp|location=Sequence derived from alignment at KK037264.1:52912..53968+ (Nannochloropsis gaditana)
ATGCGCCGCTACTACTCCGTCTTTGACTACGAGCACGAGGtagacccctc
cctccctccctccctcactccctaccccaccccgccctccctccctccct
accccgcCTTCTTATTTTTCCATGCCTACAGTTTACTCTCGCACGTATCT
CTCCCTTCAGCCATCGGCTCACGCATCATTCTCgtatcctcctctcttcc
cttcttcccttcctccctccctcagcgccTGGGTCTCGCCCCAGCGCGAG
CGCCGGGATCAAGCAGCCCCATGGGCAAGCCCCCAGTCCCTGAGGCTCCT
CGAGGgtaagggagaaggaaaaagaggagaggggaggggtggaggaggaa
ttctctctctctctctctatctatctatctatctatctatctatctctct
ctctcgttctctctctccctttctcttggaAGAGCAGCCGGCGGCCGGAT
GATGCTGCCCTCAGGAGTATTTCCTGTGATGGCTTCGAACCCCCCGCATC
GGCTCACGTGCTCTgtccccctcgttccctttcccccttcctccctgcag
cGAGAAGCCTACtccggcggtggaggaaggcgttcCTCCCATTGTCCAGG
GGGGCTTGCAGCGCGAGGGGAATTAGAGCTagcggggaaggtggggagag
aCGTTGTGAAAGGTTGAGGGGGAAGTAAGAGTGGatgtgaaaggaaagga
aatagTAGGGGCATGGAAACGCTGTACAGTGGataagggggaaaagaaag
gacgCTGATGGTGGGAGTCGAGATGGTAGAGAAGGGCgtctggagggggg
gaggccgttTCGTTTGCCTCTGCACAGGATCGATCTTAACACCCAGAAAA
AGGGTCTGCGGGGGGCGACTGAGGGTTGCGAGGCACAAGAAGGCAGgcgc
tgagggaggaggaggcgccgagggagaaaggaaagggaaaggagctggGG
TTGGGGGCTCAGGCTCATGGGAAGAGCCGTGTAGGGCGGATGTggcagca
agggaaggaatagAAGCTTGCAGTATACTTGTGGAACAGAATAGCAAAAA
AGAATGA
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Coding sequence (CDS) from alignment at KK037264.1:52912..53968+

>rna10175 ID=rna10175|Name=rna10175|organism=Nannochloropsis gaditana|type=CDS|length=2676bp|location=Sequence derived from alignment at KK037264.1:52912..53968+ (Nannochloropsis gaditana)
ATGCGCCGCTACTACTCCGTCTTTGACTACGAGCACGAGcgccTGGGTCT
CGCCCCAGCGCGAGCGCCGGGATCAAGCAGCCCCATGGGCAAGCCCCCAG
TCCCTGAGGCTCCTCGAGGAGCAGCCGGCGGCCGGATGATGCTGCCCTCA
GGAGTATTTCCTGTGATGGCTTCGAACCCCCCGCATCGGCTCACGTGCTC
TgtccccctcgttccctttcccccttcctccctgcagcGAGAAGCCTACt
ccggcggtggaggaaggcgttcCTCCCATTGTCCAGGGGGGCTTGCAGCG
CGAGGGGAATTAGAGCTagcggggaaggtggggagagaCGTTGTGAAAGg
gggaaaagaaaggacgCTGATGGTGGGAGTCGAGATGGTAGAGAAGGGCg
tctggagggggggaggccgttTCGTTTGCCTCTGCACAGGATCGATCTTA
ACACCCAGAAAAAGGGTCTGCGGGGGGCGACTGAGGGTTGCGAGGCACAA
GAAGGCAGgcgctgagggaggaggaggcgccgagggagaaaggaaaggga
aaggagctggGGTTGGGGGCTCAGGCTCATGGGAAGAGCCGTGTAGGGCG
GATGTggcagcaagggaaggaatagAAGCTTGCAGTATACTTGTGGAACA
GAATAGCAAAAAAGAATGAATGCGCCGCTACTACTCCGTCTTTGACTACG
AGCACGAGcgccTGGGTCTCGCCCCAGCGCGAGCGCCGGGATCAAGCAGC
CCCATGGGCAAGCCCCCAGTCCCTGAGGCTCCTCGAGGAGCAGCCGGCGG
CCGGATGATGCTGCCCTCAGGAGTATTTCCTGTGATGGCTTCGAACCCCC
CGCATCGGCTCACGTGCTCTgtccccctcgttccctttcccccttcctcc
ctgcagcGAGAAGCCTACtccggcggtggaggaaggcgttcCTCCCATTG
TCCAGGGGGGCTTGCAGCGCGAGGGGAATTAGAGCTagcggggaaggtgg
ggagagaCGTTGTGAAAGggggaaaagaaaggacgCTGATGGTGGGAGTC
GAGATGGTAGAGAAGGGCgtctggagggggggaggccgttTCGTTTGCCT
CTGCACAGGATCGATCTTAACACCCAGAAAAAGGGTCTGCGGGGGGCGAC
TGAGGGTTGCGAGGCACAAGAAGGCAGgcgctgagggaggaggaggcgcc
gagggagaaaggaaagggaaaggagctggGGTTGGGGGCTCAGGCTCATG
GGAAGAGCCGTGTAGGGCGGATGTggcagcaagggaaggaatagAAGCTT
GCAGTATACTTGTGGAACAGAATAGCAAAAAAGAATGAATGCGCCGCTAC
TACTCCGTCTTTGACTACGAGCACGAGcgccTGGGTCTCGCCCCAGCGCG
AGCGCCGGGATCAAGCAGCCCCATGGGCAAGCCCCCAGTCCCTGAGGCTC
CTCGAGGAGCAGCCGGCGGCCGGATGATGCTGCCCTCAGGAGTATTTCCT
GTGATGGCTTCGAACCCCCCGCATCGGCTCACGTGCTCTgtccccctcgt
tccctttcccccttcctccctgcagcGAGAAGCCTACtccggcggtggag
gaaggcgttcCTCCCATTGTCCAGGGGGGCTTGCAGCGCGAGGGGAATTA
GAGCTagcggggaaggtggggagagaCGTTGTGAAAGggggaaaagaaag
gacgCTGATGGTGGGAGTCGAGATGGTAGAGAAGGGCgtctggagggggg
gaggccgttTCGTTTGCCTCTGCACAGGATCGATCTTAACACCCAGAAAA
AGGGTCTGCGGGGGGCGACTGAGGGTTGCGAGGCACAAGAAGGCAGgcgc
tgagggaggaggaggcgccgagggagaaaggaaagggaaaggagctggGG
TTGGGGGCTCAGGCTCATGGGAAGAGCCGTGTAGGGCGGATGTggcagca
agggaaggaatagAAGCTTGCAGTATACTTGTGGAACAGAATAGCAAAAA
AGAATGAATGCGCCGCTACTACTCCGTCTTTGACTACGAGCACGAGcgcc
TGGGTCTCGCCCCAGCGCGAGCGCCGGGATCAAGCAGCCCCATGGGCAAG
CCCCCAGTCCCTGAGGCTCCTCGAGGAGCAGCCGGCGGCCGGATGATGCT
GCCCTCAGGAGTATTTCCTGTGATGGCTTCGAACCCCCCGCATCGGCTCA
CGTGCTCTgtccccctcgttccctttcccccttcctccctgcagcGAGAA
GCCTACtccggcggtggaggaaggcgttcCTCCCATTGTCCAGGGGGGCT
TGCAGCGCGAGGGGAATTAGAGCTagcggggaaggtggggagagaCGTTG
TGAAAGggggaaaagaaaggacgCTGATGGTGGGAGTCGAGATGGTAGAG
AAGGGCgtctggagggggggaggccgttTCGTTTGCCTCTGCACAGGATC
GATCTTAACACCCAGAAAAAGGGTCTGCGGGGGGCGACTGAGGGTTGCGA
GGCACAAGAAGGCAGgcgctgagggaggaggaggcgccgagggagaaagg
aaagggaaaggagctggGGTTGGGGGCTCAGGCTCATGGGAAGAGCCGTG
TAGGGCGGATGTggcagcaagggaaggaatagAAGCTTGCAGTATACTTG
TGGAACAGAATAGCAAAAAAGAATGA
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Synonyms
Publications