rna10164, rna10164 (mRNA) Nannochloropsis gaditana

Overview
Namerna10164
Unique Namerna10164
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length216
Alignment locationKK037264.1:30964..31749 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100683g3.6890.mrna
Orig protein idgnl|cribi|Naga_100683g3.6890
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:30964..31749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100683g3gene9867Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20541.1cds10133Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10164rna10164-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10164 ID=rna10164|Name=rna10164|organism=Nannochloropsis gaditana|type=mRNA|length=216bp
ATGGGTGTCCATCGTCTGACAAGTTGGAGCCACGAAAAGCCACAATGCGA
CCTTCTATATGAGAAAAGGGATTTGAGAGACTTCTCGGGAAAACGCTTCA
TAGTAGATGCGGCCTCTTTTATGTTTTGGATACTGCAGGACGTCATGCCC
AGGCAGGACCTGCACTATCTTGGGGACTACGGGCAGGATTTTGTTGCCGT
CGTTCGCTACTTTTGA
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protein sequence of rna10164

>rna10164-protein ID=rna10164-protein|Name=rna10164|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
PDSTPSGTRSWQAREGRSVRVTERNARKGGGGEEGIKRGCEAEVGGSSCI
MSVRRPHYSSCVSNPLYIHVLSPINMHEVNIAPLEKGKRDLGSGGWEKGG
RGAGRGGEEDLEKCAGRGVFFLPKMARKVRKT
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mRNA from alignment at KK037264.1:30964..31749-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10164 ID=rna10164|Name=rna10164|organism=Nannochloropsis gaditana|type=mRNA|length=786bp|location=Sequence derived from alignment at KK037264.1:30964..31749- (Nannochloropsis gaditana)
TCCCGACAGCACTCCGTCCGGTACTCGGAGTTGGCAAGCGAGGGAGGGCA
GGAGTGTGAGGGTGACCGAGAGGAATGCTAGGAAGGGGGGAGGGGGAGAG
GAAGGGATAAAGCGTGGATGTGAAGCGGAAGTGGGAGGTTCTTCTTGCAT
TATGAGCGTCCGTCGTCCACATTATTCGTCATGTGTGTCGAACCCTTTAT
ATATACATGTCCTCTCACCTATCAATATGCATGAAGTTAATATTGCTCCC
TTGGAAAAGGGAAAGAGGGATTTAGGATCGGGGGGGTGGGAGAAAGGAGG
GAGAGGAGCAGGAAGAGGAGGAGAGGAAGATTTGGAAAAGTGTGCAGGAC
GGGGCGTCTTCTTCCTCCCAAAAATGGCGCGAAAAGTAAGAAAAACGTGA
CACAAGCACCATGAAGCACCCAAAATTTTGAGGGAGGAAGGGAAGAAGGA
GGGGAGAGAGGAAGTCAGCTTGCGGTGCTTGCGAAGAAGGACACTGACAA
GTATCACTGGAGGTGGCTTTCCTCTGGGAGAGGGCGCACGTTCCTGGGAT
GCACGTCCAACCTCGCGGTTGAGCTTGCCTTTACTTTAATACCTAACAAA
AAGAAGGGAAGCGAGCGAAAAAAGTAAAGCTTTCGTGCATGGAAAGGGAA
AGAGTGGTGGGCGGGCGGAGGGTGGCATCCACAAAGAAGAAAGGGGAAAT
GGAGCGGTTGTTACGATCAGCGTGGACAAAGCTGTGGCACGGGCCACATA
TGATCCATATATATTTATGTATGTGTATTTTAATCC
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Coding sequence (CDS) from alignment at KK037264.1:30964..31749-

>rna10164 ID=rna10164|Name=rna10164|organism=Nannochloropsis gaditana|type=CDS|length=399bp|location=Sequence derived from alignment at KK037264.1:30964..31749- (Nannochloropsis gaditana)
CCCGACAGCACTCCGTCCGGTACTCGGAGTTGGCAAGCGAGGGAGGGCAG
GAGTGTGAGGGTGACCGAGAGGAATGCTAGGAAGGGGGGAGGGGGAGAGG
AAGGGATAAAGCGTGGATGTGAAGCGGAAGTGGGAGGTTCTTCTTGCATT
ATGAGCGTCCGTCGTCCACATTATTCGTCATGTGTGTCGAACCCTTTATA
TATACATGTCCTCTCACCTATCAATATGCATGAAGTTAATATTGCTCCCT
TGGAAAAGGGAAAGAGGGATTTAGGATCGGGGGGGTGGGAGAAAGGAGGG
AGAGGAGCAGGAAGAGGAGGAGAGGAAGATTTGGAAAAGTGTGCAGGACG
GGGCGTCTTCTTCCTCCCAAAAATGGCGCGAAAAGTAAGAAAAACGTGA
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Synonyms
Publications