rna10151, rna10151 (mRNA) Nannochloropsis gaditana

Overview
Namerna10151
Unique Namerna10151
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length249
Alignment locationKK037264.1:526..925 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102290g2.4993.mrna
Orig protein idgnl|cribi|Naga_102290g2.4993
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:526..925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102290g2gene9854Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10151rna10151-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20553.1cds10120Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10151 ID=rna10151|Name=rna10151|organism=Nannochloropsis gaditana|type=mRNA|length=249bp
ATGCACTGCGTCCACGGATTGGGGGGGAAATGGGGAAGGAGTTCACCAAA
ACGGGGGCGTAGGAGGCCTGGTGCTTTTATTCCCTCAAGGTCGATGATGT
CGTCACGTCGGACAAGACATCCGTCGAAGAAAGAAATGGCGCGTAGCCGC
CGGGCAGCTGCCTCTCTCTTGAAGCTTAAGGTCTCTTCACGCGGTAGCTT
GATGGAATGGGAGGGGAGTGATGGAGGTGAGGTGACATCTCCTCGATAG
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protein sequence of rna10151

>rna10151-protein ID=rna10151-protein|Name=rna10151|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MYLASSTIGKKEQDCISPFLVLEIFASCNPHGRYNDGWSMRGYFRAFRFK
FLKKKNHGTSLVITVDMYIQNDLYRSCLCINVCVRAWDPIRRPAPPVPPA
RAMKVKATKKDERVRLEE
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mRNA from alignment at KK037264.1:526..925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10151 ID=rna10151|Name=rna10151|organism=Nannochloropsis gaditana|type=mRNA|length=400bp|location=Sequence derived from alignment at KK037264.1:526..925- (Nannochloropsis gaditana)
ATGTATTTAGCGAGTAGTACCATAGGAAAAAAGGAGCAAGACTGCATTTC
CCCCTTTCTCGTGTCAGAATAGAAGTAGCGTTAGATGTTGGAGGAAGCGC
AGAAGCCTCGAAATATTCGCCTCTTGTAACCCTCACGGCCGTTACAACGA
CGGTTGGAGCATGCGTGGGTACTTCCGAGCTTTCAGATTCAAATTTTTGA
AAAAAAAAAACCATGGCACGTCCCTTGTCATTACGGTAGACATGTACATA
CAGAATGATTTATACAGAAGCTGCCTGTGTATTAATGTGTGCGTGCGTGC
ATGGGACCCTATTCGCCGACCAGCACCACCTGTACCCCCCGCCCGGGCAA
TGAAAGTGAAAGCAACGAAAAAGGACGAACGAGTCCGACTTGAAGAGTAA
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Coding sequence (CDS) from alignment at KK037264.1:526..925-

>rna10151 ID=rna10151|Name=rna10151|organism=Nannochloropsis gaditana|type=CDS|length=714bp|location=Sequence derived from alignment at KK037264.1:526..925- (Nannochloropsis gaditana)
CCTCGAAATATTCGCCTCTTGTAACCCTCACGGCCGTTACAACGACGGTT
GGAGCATGCGTGGGTACTTCCGAGCTTTCAGATTCAAATTTTTGAAAAAA
AAAAACCATGGCACGTCCCTTGTCATTACGGTAGACATGTACATACAGAA
TGATTTATACAGAAGCTGCCTGTGTATTAATGTGTGCGTGCGTGCATGGG
ACCCTATTCGCCGACCAGCACCACCTGTACCCCCCGCCCGGGCAATGAAA
GTGAAAGCAACGAAAAAGGACGAACGAGTCCGACTTGAAGAGTAAATGTA
TTTAGCGAGTAGTACCATAGGAAAAAAGGAGCAAGACTGCATTTCCCCCT
TTCTCGTCCTCGAAATATTCGCCTCTTGTAACCCTCACGGCCGTTACAAC
GACGGTTGGAGCATGCGTGGGTACTTCCGAGCTTTCAGATTCAAATTTTT
GAAAAAAAAAAACCATGGCACGTCCCTTGTCATTACGGTAGACATGTACA
TACAGAATGATTTATACAGAAGCTGCCTGTGTATTAATGTGTGCGTGCGT
GCATGGGACCCTATTCGCCGACCAGCACCACCTGTACCCCCCGCCCGGGC
AATGAAAGTGAAAGCAACGAAAAAGGACGAACGAGTCCGACTTGAAGAGT
AAATGTATTTAGCGAGTAGTACCATAGGAAAAAAGGAGCAAGACTGCATT
TCCCCCTTTCTCGT
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Synonyms
Publications