rna10140, rna10140 (mRNA) Nannochloropsis gaditana

Overview
Namerna10140
Unique Namerna10140
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length485
Alignment locationKK037263.1:50290..51787 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101669g1.5987.mrna
Orig protein idgnl|cribi|Naga_101669g1.5987
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:50290..51787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101669g1gene9843Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10140rna10140-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20564.1cds10109Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10140 ID=rna10140|Name=rna10140|organism=Nannochloropsis gaditana|type=mRNA|length=485bp
AGCACAAATTAAAAAGATTCTCATAGTTCACCCATTTCTGTACTCTGTCC
TGTCTAGCGATTGTTTTCTTTCAGTGAACAGGGTTGTGCGTGTTTGAGGT
GGGATCGGGTCTGGGCGCTGGAATGTTCAGCAGCGGCATGCTGGGCTCGG
TGAGAAAAACAGGGATTGGTCCAACGACGCTGCACCACGCGCATCAAGCA
TCAAGAATGGGCGGGTCTTCCTCGTCCTTGCCGCAATATAAAGGCATGGG
ATCGAGCGATATGGCACCTTTTAATGGGTTTAGAGAGGAGGGAAGGGGGT
CGGGGGGGGACGACAGGAACCCTCACCTCGGCTCCTTGGTGAAAAACGAG
AGAGGGCTCAGAGAAGAGGGAGTCCTTCCCGTCTCCCCGCTTCGCCGGCT
CAGCACCTGTCTGTCCGTCCTCATCATCCTTGTCTCAACCGCCTCTCTCT
GCTTGCACGGCCTTCTACTCCTCTCCCCCGCCACC
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protein sequence of rna10140

>rna10140-protein ID=rna10140-protein|Name=rna10140|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MRGNCHIHVPVRTADVCNRHGQMPVFVWGGTYWPVVLFDSWLFFSYLQAL
NMWRNLPPPSSLPTNPFHFTHSKPTGLNTRIRTRTTGQSASPFFPYFPVY
KPGPPAFMKYLDCERLGLMSAALANRRVGDKVLMGRIEAYSCKPLSDDKR
LKKELELSFREDGAHHDE
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mRNA from alignment at KK037263.1:50290..51787+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10140 ID=rna10140|Name=rna10140|organism=Nannochloropsis gaditana|type=mRNA|length=1498bp|location=Sequence derived from alignment at KK037263.1:50290..51787+ (Nannochloropsis gaditana)
CGACTTGCCTCTCGTGGGCGGATTGTTCTCTTCCCGCGCTGTATCCCCTT
ATTTCATGGCACAATTTCTTGCGGCACACAAATCGAGGAcgccctttctc
tcctcctgcacgccACATGCCGATGAAGAGGGCGTGTGTCCCGTGTGTTA
AGACGGTGGCCGTGTCCTACGTGTTTTATGTACGCATCAAAGCTTTCTTG
AAGCATGGGACCCCGCCAGCACGACATCCAGGCTCTAGGAGCTTTGTGCG
ATCATTTCGCGTTTTCCCGGCACAAAGTCATGGCTCCGTCGCCTGGTGTC
TGATGCCACGAACCATACACTCGTGGCGTGCAGGAAGTGGAGCGGCtagg
ggtggtggtggatgcgTGCTGGTGTTGTTGCGGGCGTCACATGTAATATT
GCCGCAGTTTCCTGCTCGAAGCGTTGTGTCTTGAAATTGAAAAAGATCAA
TGCGGGGCAATTGCCACATTCATGTGCCGGTTCGCACCGCCGACGTGTGC
AACAGGCACGGTCAGATGCCAGTGTTTGTGTGGGGAGGAACCTATTGGCC
GGTTGTGCTGTTCGATTCGTGGCTGTTTTTTTCGTATTTGCAAGCTTTGA
ATATGTGGAGgaatctccctcctccctcctccctcccgaccaaCCCCTTT
CATTTTACACACTCAAAGCCCACAGGATTGAACACCAGGATACGCACGCG
CACCACTGGGCAGTCagcttctcccttctttccttatTTCCCTGTTTACA
AACCTGGGCCTCCGGCATTCATGAAGTACCTAGACTGTGAACGTCTGGGG
TTGATGAGTGCAGCACTGGCCAATCGACGCGTGGGAGACAAGGTCTTGAT
GGGGAGAATAGAGGCTTACTCATGTAGGTGATATTCGGCTCATGGGTTTG
TGATCGGGAAGAAGTGGCTCTATCTGTGGGGTGGggcctcaccctccctc
cctccctccctccctccctccctccctccctccctccctccctccttccc
tccctgcttgccccccttttttctctgGTTCAAAACGCACAGGCAAACCC
CTATCGGACGACAAGCGTCTCAAGAAAGAACTGGAACTGTCCTTCCGTGA
GGACGGGGCTCATCACggtgagaaagggagggagggagggaggaagagag
ggaggaagggagaattATTGCTAGGCAGTCGTGCAAAATGAATTTATTTC
TCCCGATAGGAATTGGGGTTTATTCTCTTCATCTGCAGACGAATgacgtc
cctccttctcctccttgtctccctccctccctcccttcctccctccctct
ctccctccttccctccttcccacccaggCGGCAACCCCCTCCCGAGTctg
agcgggggggggctccacgtcctccctcccttcctctctcggctcctccc
tcggacACTCCCATatggccccctccctccccatcaacGCGTACAGAATA
CCCCCTTCCGGTTCAGGCTTCCGGTGGGTGCCTGCCCTCcaaccctcc
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Coding sequence (CDS) from alignment at KK037263.1:50290..51787+

>rna10140 ID=rna10140|Name=rna10140|organism=Nannochloropsis gaditana|type=CDS|length=1521bp|location=Sequence derived from alignment at KK037263.1:50290..51787+ (Nannochloropsis gaditana)
ATGCGGGGCAATTGCCACATTCATGTGCCGGTTCGCACCGCCGACGTGTG
CAACAGGCACGGTCAGATGCCAGTGTTTGTGTGGGGAGGAACCTATTGGC
CGGTTGTGCTGTTCGATTCGTGGCTGTTTTTTTCGTATTTGCAAGCTTTG
AATATGTGGAGgaatctccctcctccctcctccctcccgaccaaCCCCTT
TCATTTTACACACTCAAAGCCCACAGGATTGAACACCAGGATACGCACGC
GCACCACTGGGCAGTCagcttctcccttctttccttatTTCCCTGTTTAC
AAACCTGGGCCTCCGGCATTCATGAAGTACCTAGACTGTGAACGTCTGGG
GTTGATGAGTGCAGCACTGGCCAATCGACGCGTGGGAGACAAGGTCTTGA
TGGGGAGAATAGAGGCTTACTCATGCAAACCCCTATCGGACGACAAGCGT
CTCAAGAAAGAACTGGAACTGTCCTTCCGTGAGGACGGGGCTCATCACgA
CGAATgaATGCGGGGCAATTGCCACATTCATGTGCCGGTTCGCACCGCCG
ACGTGTGCAACAGGCACGGTCAGATGCCAGTGTTTGTGTGGGGAGGAACC
TATTGGCCGGTTGTGCTGTTCGATTCGTGGCTGTTTTTTTCGTATTTGCA
AGCTTTGAATATGTGGAGgaatctccctcctccctcctccctcccgacca
aCCCCTTTCATTTTACACACTCAAAGCCCACAGGATTGAACACCAGGATA
CGCACGCGCACCACTGGGCAGTCagcttctcccttctttccttatTTCCC
TGTTTACAAACCTGGGCCTCCGGCATTCATGAAGTACCTAGACTGTGAAC
GTCTGGGGTTGATGAGTGCAGCACTGGCCAATCGACGCGTGGGAGACAAG
GTCTTGATGGGGAGAATAGAGGCTTACTCATGCAAACCCCTATCGGACGA
CAAGCGTCTCAAGAAAGAACTGGAACTGTCCTTCCGTGAGGACGGGGCTC
ATCACgACGAATgaATGCGGGGCAATTGCCACATTCATGTGCCGGTTCGC
ACCGCCGACGTGTGCAACAGGCACGGTCAGATGCCAGTGTTTGTGTGGGG
AGGAACCTATTGGCCGGTTGTGCTGTTCGATTCGTGGCTGTTTTTTTCGT
ATTTGCAAGCTTTGAATATGTGGAGgaatctccctcctccctcctccctc
ccgaccaaCCCCTTTCATTTTACACACTCAAAGCCCACAGGATTGAACAC
CAGGATACGCACGCGCACCACTGGGCAGTCagcttctcccttctttcctt
atTTCCCTGTTTACAAACCTGGGCCTCCGGCATTCATGAAGTACCTAGAC
TGTGAACGTCTGGGGTTGATGAGTGCAGCACTGGCCAATCGACGCGTGGG
AGACAAGGTCTTGATGGGGAGAATAGAGGCTTACTCATGCAAACCCCTAT
CGGACGACAAGCGTCTCAAGAAAGAACTGGAACTGTCCTTCCGTGAGGAC
GGGGCTCATCACgACGAATga
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Synonyms
Publications