rna10136, rna10136 (mRNA) Nannochloropsis gaditana

Overview
Namerna10136
Unique Namerna10136
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length552
Alignment locationKK037263.1:36956..37658 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102232g1.4495.mrna
Orig protein idgnl|cribi|Naga_102232g1.4495
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:36956..37658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102232g1gene9839Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10136rna10136-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20568.1cds10105Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10136 ID=rna10136|Name=rna10136|organism=Nannochloropsis gaditana|type=mRNA|length=552bp
AAACATATCCACCATCGGAAACCAGAACTTGAAGCCTGGTACACCTCGCC
ACGCTCCCCCCTTGCTCGATCAAAGATAAATGCATGTGATCGGTTGAAAT
AGTAGTAAAAGGGTGCCTTAGTGGTTTCTTTCATGCACATTTGGAGCTCA
CGGAATCGTGTGTCACTTCCTCCATGCTCGCACGTCCAAACCTGAACACC
TCCCCCCTTGTTTTTCCAGGCACCTAGTCCGCAAAACGATCGCAAATCAA
ACATGCCGTCTCTTTACCACGCTTCAACGTTCGTAGTTGGGCTCTTGCTT
GCCAGCACTGGGGCAGGGAATGCAGAGGTATTGCGAGGGGCCGCTGATAA
AGAAGAAGTCACAGATATCTACACGAACCCGAAAGTCAACGGAGCCCGGG
TGGACTGGTGCTACGGCTACGACTTCCGAATGGGCCCGGGCACGGACAAT
CCTGCCGCTTTTCTGGGGTGTGGTCAGGATGCCGCGGATGCCTATTGCCG
GCTAAGGGGTTACGAAAAGGCCTCGGTAGGGCGGGAGGGAGGGAGGGAGT
GA
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protein sequence of rna10136

>rna10136-protein ID=rna10136-protein|Name=rna10136|organism=Nannochloropsis gaditana|type=polypeptide|length=180bp
MGGLSEEGGGEEGGVEEGKEEGGGAQTTLSDGTNLGLKGDINRKRGRERE
RGKKKCFQRVLAEETTFRVEYLISYKKSPWDARSQSLCPHGKERDSNSGW
QKNRGFCHRPCRASNVGREAREYEGREGTEGDRKKRRSEEGDQSCFMTVE
SPSGFPSNIQHRHTPPHVFIKLKGKKNFSL
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mRNA from alignment at KK037263.1:36956..37658+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10136 ID=rna10136|Name=rna10136|organism=Nannochloropsis gaditana|type=mRNA|length=703bp|location=Sequence derived from alignment at KK037263.1:36956..37658+ (Nannochloropsis gaditana)
ATGGGGGGGCTctcagaggaagggggaggagaagagggaggggtagagga
agggaaggaggaggggtcggggagaagggcgcgacgggggaaagaagagg
aatggggagggggtgggagggggtgggtggggaaagaCGTGCGTCATTAG
GGTGCTTGAGTGCTGtattggggagggagaggtgtgttggagaggaagga
gggtggcggccgccaaaagggacaggggaggcgCACAGACCACACTTTCT
GATGGAACAAATTTGGGGTTAAAAGGGGATATAAacagaaagagagggag
agagagagaacgagggaaaaagaaatgcTTCCAGAGGGTCTTGGCAGAAG
AAACCACTTTTAGAGTAGAGTACCTCATTAGTTACAAAAAATCTCCGTGG
GACGCGAGGTCTCAATCCCTTTGCCCGcacgggaaagaaagggattCGAA
CTCCGGGTGGCAAAAGAATCGGGGCTTTTGCCACCGTCCGTGCCGAGCGT
CGAatgtgggaagggaagcgcgGGAAtacgagggaagggaaggcacAGAG
GGCGataggaagaaaaggaggagcgaggagggcgatcaATCCTGTTTCAT
GACGGTAGAATCGCCTTCCGGCTTTCCGTCCAACATTCAGCACAGGCATA
CGCCACCACATGTTTTTATTAAAttaaagggaaaaaaaaactttAGCCTG
TAA
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Coding sequence (CDS) from alignment at KK037263.1:36956..37658+

>rna10136 ID=rna10136|Name=rna10136|organism=Nannochloropsis gaditana|type=CDS|length=1086bp|location=Sequence derived from alignment at KK037263.1:36956..37658+ (Nannochloropsis gaditana)
ATGGGGGGGCTctcagaggaagggggaggagaagagggaggggtagagga
agggaaggaggaggggggaggcgCACAGACCACACTTTCTGATGGAACAA
ATTTGGGGTTAAAAGGGGATATAAacagaaagagagggagagagagagaa
cgagggaaaaagaaatgcTTCCAGAGGGTCTTGGCAGAAGAAACCACTTT
TAGAGTAGAGTACCTCATTAGTTACAAAAAATCTCCGTGGGACGCGAGGT
CTCAATCCCTTTGCCCGcacgggaaagaaagggattCGAACTCCGGGTGG
CAAAAGAATCGGGGCTTTTGCCACCGTCCGTGCCGAGCGTCGAatgtggg
aagggaagcgcgGGAAtacgagggaagggaaggcacAGAGGGCGatagga
agaaaaggaggagcgaggagggcgatcaATCCTGTTTCATGACGGTAGAA
TCGCCTTCCGGCTTTCCGTCCAACATTCAGCACAGGCATACGCCACCACA
TGTTTTTATTAAAttaaagggaaaaaaaaactttAGCCTGTAAATGGGGG
GGCTctcagaggaagggggaggagaagagggaggggtagaggaagggaag
gaggaggggggaggcgCACAGACCACACTTTCTGATGGAACAAATTTGGG
GTTAAAAGGGGATATAAacagaaagagagggagagagagagaacgaggga
aaaagaaatgcTTCCAGAGGGTCTTGGCAGAAGAAACCACTTTTAGAGTA
GAGTACCTCATTAGTTACAAAAAATCTCCGTGGGACGCGAGGTCTCAATC
CCTTTGCCCGcacgggaaagaaagggattCGAACTCCGGGTGGCAAAAGA
ATCGGGGCTTTTGCCACCGTCCGTGCCGAGCGTCGAatgtgggaagggaa
gcgcgGGAAtacgagggaagggaaggcacAGAGGGCGataggaagaaaag
gaggagcgaggagggcgatcaATCCTGTTTCATGACGGTAGAATCGCCTT
CCGGCTTTCCGTCCAACATTCAGCACAGGCATACGCCACCACATGTTTTT
ATTAAAttaaagggaaaaaaaaactttAGCCTGTAA
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Synonyms
Publications