rna10135, rna10135 (mRNA) Nannochloropsis gaditana

Overview
Namerna10135
Unique Namerna10135
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1468
Alignment locationKK037263.1:35761..36672 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101597g1.4622.mrna
Orig protein idgnl|cribi|Naga_101597g1.4622
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:35761..36672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101597g1gene9838Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10135rna10135-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20569.1cds10104Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10135 ID=rna10135|Name=rna10135|organism=Nannochloropsis gaditana|type=mRNA|length=1468bp
TTTCTTCTTCTAGCGGCCGCCACTGTCGGCACGGCCAAGTTCAACAACAT
TACGGGAGGCCTTCCCAACGCACGCAGGCCCAAGTATCCTGGCACGAAGA
AATGCGATCCGACCCGCTGCATTTGCACACCCGAAGCATTCATCGAGGCG
TTCCTGAACACGCCTAACTTGAGCGGAAATTTGACCACTAATCCCAACCT
CAATTCCACCGTCATCCCTTTTCCCGTGTGTGTTGGCGAGGAGCTTGTTG
GTCGCGTGAACGGCAATGGTATCCCTCCCCTTACTCCGACGCTCTCTCCA
CTAGATCGGCAAAAGCACATGACTTTTGTATTCGACAACATTGGACTGGA
AAAGATCCTGGCCCTGGGGCAGTATCGTGCGAAGCAGATTCTGTCTTTGA
TCGGATACGGCGCGATCGACACGTTCTCCTGCAATCCTGATCCGGCAAAG
CAACAACTGGTCGTCTTGCAGATCAAAGAGCCCAATGTCGGAGGGGCGTG
CCGGCGTAAGAATCCCAACGATCCCTACAGCAAGATTCCCAACAAGTGCA
ACAGAAAGCTGAGGATGTCTGCCATCTGGGATAACGCACTGGTCTGGCTT
GAGCGTGTCTTCAGGAAAGACTTGAGCCGTTTCGAGCCTGCCATGAACAT
CCTCAAAACGACGCGATTCGAGACGTTGACTGGCTGCCGCCCCGACGACG
TCGCAAAGCTTTACTTTCCTTTCGATAGGACTTTTGCGAACCTGACAGCC
GCAGGCTGCTCCGACGTATTCGCGAACGCTGTGGTCGAGTTTGCCACTAC
TCCCTGCTACAAGCCCTCCATTGCGCAAATGAACGAGTACGCCTCCAAGT
ATCTCTACTACTCTGAGGGCCGCAAGGGCCGCAAGACCAACTACTGTGAA
GCGGACATTCTGCTCCAGCAGCTTGATCCTACGTCGCCGGACATCGCTCA
GCAGTTGCGGGCATACTTTTTCATCACGCAGTCTTTCAATGGCTACTATG
CCGGCTATGGGTGGACTGCGAATGACTATGCGTTGCCGCAGATCCCCGAG
TGGTGGATCAATAATCAGCTATACGCCAAGGCAACATGGGCCAGCGTCGG
ACTGAACTGCTCCATGTCGTCCGATCCAGCAGAGGTCCAGGCATTCTCCG
TCGAGAATGCTTTCGTGCCTTACATGGCTGGTTTTAATTAGATTCTACAA
GAAGCATACCTTGCCACTTGCTAGAAATGCCGGTGGAAGAGTGCACTCGT
TTGTGCACGTCTCACTGGCTAGCTTGGATGCGTATTGTGACCGATGGCCG
TGGTTCTCTCTTACGACTGAAGTCTTCTTTGTTTCTCGTAAGCTGTACCT
CTACGGTACTGTCTAGATATAAATGTTATATTCCTAAGGTACTATCTTAT
AAGGTACTGACTTACCGTGTGTCTCGGTCACACGCGCCTTTTTATGTTGC
GAAAATCCTTCATTTCGA
back to top

protein sequence of rna10135

>rna10135-protein ID=rna10135-protein|Name=rna10135|organism=Nannochloropsis gaditana|type=polypeptide|length=99bp
MPSLYHASTFVVGLLLASTGAGNAEVLRGAADKEEVTDIYTNPKVNGARV
DWCYGYDFRMGPGTDNPAAFLGCGQDAADAYCRLRGYEKASVGREGGRE
back to top

mRNA from alignment at KK037263.1:35761..36672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10135 ID=rna10135|Name=rna10135|organism=Nannochloropsis gaditana|type=mRNA|length=912bp|location=Sequence derived from alignment at KK037263.1:35761..36672+ (Nannochloropsis gaditana)
AAACATATCCACCATCGGAAACCAGAACTTGAAGCCTGGTACACCTCGCC
ACgctccccccttgctcgaTCAAAGATAAATGCATGTGATCGGTTGAAAT
AGTAGTAAAAGGGTGCCTTAGTGGTTTCTTTCATGCACATTTGGAGCTCA
CGGAATCGTGTgtcacttcctccatgctcGCACGTCCAAACCTGaacacc
tccccccttgtttTTCCAGGCACCTAGTCCGCAAAACGATCGCAAATCAA
ACATGCCGTCTCTTTACCACGCTTCAACGTTCGTAGTTGGGCTCTTGCTT
GCCAGCACTGGGGCAGGGAATGCAGAGGTGAGTCCGTCCTATCCGCCTCT
TTACAAGGAAGAGCCGTGGAAATGCTGTTCTCGTTCACACAACCTGATAG
GATACCCGTCATCCTTCGTACTTCTTACATGCTACTCAACCTGCTCCACT
GCATCGACATGGCTGACTATTAATTGTACAGGTATTGCGAGGGGCCGCTG
ATAAAGAAGAAGTCACAGATATCTACACGAACCCGAAAGTCAACGGAGCC
CGGGTGGACTGGTGCTACGGTATAGCGTCTTTCATGCCCCttgtttccct
cctttttccctcctttcccctttcaaCTACCTATAtaccttccttctcat
tgTTTCCAGGCATGCAATGAATGGGGCACATCCAGgaggctttccccctt
cccgtgAATCTCTTGCTGACAAAGAGATGcgttgtctccctcctcctccc
tccccttcccccttcctgccctcagGCTACGACTTCCGAATGGGCCCGGG
CACGGACAATCCTGCCGCTTTTCTGGGGTGTGGTCAGGATGCCGCGGATG
CCTATTGCCGGCTAAGGGGTTACGAAAAGGCCTCggtagggcgggaggga
gggagggagtga
back to top

Coding sequence (CDS) from alignment at KK037263.1:35761..36672+

>rna10135 ID=rna10135|Name=rna10135|organism=Nannochloropsis gaditana|type=CDS|length=900bp|location=Sequence derived from alignment at KK037263.1:35761..36672+ (Nannochloropsis gaditana)
ATGCCGTCTCTTTACCACGCTTCAACGTTCGTAGTTGGGCTCTTGCTTGC
CAGCACTGGGGCAGGGAATGCAGAGGTATTGCGAGGGGCCGCTGATAAAG
AAGAAGTCACAGATATCTACACGAACCCGAAAGTCAACGGAGCCCGGGTG
GACTGGTGCTACGGCTACGACTTCCGAATGGGCCCGGGCACGGACAATCC
TGCCGCTTTTCTGGGGTGTGGTCAGGATGCCGCGGATGCCTATTGCCGGC
TAAGGGGTTACGAAAAGGCCTCggtagggcgggagggagggagggagtga
ATGCCGTCTCTTTACCACGCTTCAACGTTCGTAGTTGGGCTCTTGCTTGC
CAGCACTGGGGCAGGGAATGCAGAGGTATTGCGAGGGGCCGCTGATAAAG
AAGAAGTCACAGATATCTACACGAACCCGAAAGTCAACGGAGCCCGGGTG
GACTGGTGCTACGGCTACGACTTCCGAATGGGCCCGGGCACGGACAATCC
TGCCGCTTTTCTGGGGTGTGGTCAGGATGCCGCGGATGCCTATTGCCGGC
TAAGGGGTTACGAAAAGGCCTCggtagggcgggagggagggagggagtga
ATGCCGTCTCTTTACCACGCTTCAACGTTCGTAGTTGGGCTCTTGCTTGC
CAGCACTGGGGCAGGGAATGCAGAGGTATTGCGAGGGGCCGCTGATAAAG
AAGAAGTCACAGATATCTACACGAACCCGAAAGTCAACGGAGCCCGGGTG
GACTGGTGCTACGGCTACGACTTCCGAATGGGCCCGGGCACGGACAATCC
TGCCGCTTTTCTGGGGTGTGGTCAGGATGCCGCGGATGCCTATTGCCGGC
TAAGGGGTTACGAAAAGGCCTCggtagggcgggagggagggagggagtga
back to top
Synonyms
Publications