rna1013, rna1013 (mRNA) Nannochloropsis gaditana

Overview
Namerna1013
Unique Namerna1013
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length628
Alignment locationCM002456.1:963423..964128 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100112g6.5450.mrna
Orig protein idgnl|cribi|Naga_100112g6.5450
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:963423..964128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100112g6gene976Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna1013rna1013-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29667.1cds1012Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna1013 ID=rna1013|Name=rna1013|organism=Nannochloropsis gaditana|type=mRNA|length=628bp
AAAACTGTCCCGTCGTTCCTGTCTCCAAGCAAAGATCCAGGCAAAGACTC
ACCAAGTTCACACACTACTGTAGGATACAGATCATGAGGGACAAAGCTTT
GACTTCTACGCTCATTTTGCAGGCCTTACTGAAAGGGAGCGCTTTTCTTC
TGCCCCTTGCTCCTTCACTTCCATCATCCCGCCTCGCCGCAGCCGATTCG
CCCTCGTCCTCCTCCCTGCGACAACAACCAGAGGTGACGCCGGAGCTCAT
AAAACATACAGCCACTCTTGCTCAGCTCCATTTCGATGAGGATGAGATTC
AAAATATGATCCCCAGGTTTCAGGCATTTCTCAGCTTCGTAGACAGAATG
CAAGACGTCCCGGACTCTGCCGCCGTCAGTGCTCCTGACTCTATGCCTAC
CGTACAAGAGGTCCTGCGTCCTGATAGCCCGTCCATCTTCCCAAACCAAG
ACGCAATATTTACAAATATGGCTGAGCAGGAGGATGCGTTCTTACGTGTT
CCCAAAGTTGGAGAGGAAGACACATAGCATGCCCTGCTGTAACTTTTGTA
GGAACTGCAACGACGAAGGATATCAGATGGTCTCTGATGGTAGCAAATCT
AAAGAACAAACTTGATGGAAACTTACAC
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protein sequence of rna1013

>rna1013-protein ID=rna1013-protein|Name=rna1013|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MRTRLCVLRAWTRVACLPHFYSDSRQGMRWNKCWRRSRSSSMWRAQGRKG
REESKCVATMWEVSLAIQAKRRQKTRAIRGRCLHRMLSPVREAPNAGFIS
NLLLT
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mRNA from alignment at CM002456.1:963423..964128+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna1013 ID=rna1013|Name=rna1013|organism=Nannochloropsis gaditana|type=mRNA|length=706bp|location=Sequence derived from alignment at CM002456.1:963423..964128+ (Nannochloropsis gaditana)
ATTGGGTGGAGACGGGCGTGGGCCAGGCGAAGATCCTGGTCCCTCTCACG
CGCGACACCGACGCGACTGTTCCCGCGCGAGTCGTGATGCGGCGGGAGCC
CGGCACCAGCGTCCTGATCAACACCTTGCTAAAGGAGCCTGTGGGGGCGG
CCAAGCATGCGGACAAGGCTTTGCGTCTTACGTGCCTGGACGAGGGTGGC
GTGCCTTCCACATTTTTATTCCGATTCAAGACAGGGGATGAGATGGAACa
aatgctggaggagatcgagaaGCAGCTCGATGTGGCGCGCgcaggggaga
aagggcagggaggaaagtaaaTGCGTGGCCACAATGTGGGAAGTAAGTTT
AGCGATTCAGGCGAAAAGAAGACAAAAGACGAGAGCAATACGAGGAAGAT
GTTTGCATCGCATGCTATCCCCGGTTAGGGAGGCTCCAAATGCGGGCTTT
ATTTCCAATCTTTTACTGACCTGATCTCAAGCGAGCGGTGACGTAGATCC
TCGACTATGCCCTAGCGAGGTGCAATGCAAGTATCCACCACGACAGCAGT
ATGGAGACCAGGCTTAACTGCTcccctttttaaaaaatgtcaTTGATACA
TACTAACCGATTTGGCTGCGGGCCCGCACTTGAAATCCGGTTCGCGGCCT
ATCTCGTCTTTGCACTTGCGTCAGACGCCGGGACTTATCCCTTCAATATC
AGTTAC
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Coding sequence (CDS) from alignment at CM002456.1:963423..964128+

>rna1013 ID=rna1013|Name=rna1013|organism=Nannochloropsis gaditana|type=CDS|length=318bp|location=Sequence derived from alignment at CM002456.1:963423..964128+ (Nannochloropsis gaditana)
ATGCGGACAAGGCTTTGCGTCTTACGTGCCTGGACGAGGGTGGCGTGCCT
TCCACATTTTTATTCCGATTCAAGACAGGGGATGAGATGGAACaaatgct
ggaggagatcgagaaGCAGCTCGATGTGGCGCGCgcaggggagaaagggc
agggaggaaagtaaaTGCGTGGCCACAATGTGGGAAGTAAGTTTAGCGAT
TCAGGCGAAAAGAAGACAAAAGACGAGAGCAATACGAGGAAGATGTTTGC
ATCGCATGCTATCCCCGGTTAGGGAGGCTCCAAATGCGGGCTTTATTTCC
AATCTTTTACTGACCTGA
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Synonyms
Publications