rna10117, rna10117 (mRNA) Nannochloropsis gaditana

Overview
Namerna10117
Unique Namerna10117
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length210
Alignment locationKK037262.1:82482..82793 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100649g2.9565.mrna
Orig protein idgnl|cribi|Naga_100649g2.9565
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:82482..82793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100649g2gene9820Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10117rna10117-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20587.1cds10086Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10117 ID=rna10117|Name=rna10117|organism=Nannochloropsis gaditana|type=mRNA|length=210bp
ATGGAGACAAAACCAAGAGGTGTCAACCTTTTCCCCAATTTCCGAAACGC
GGGCCGTACGACAGGCGCGATTCCTGCCATTATAGGCCCCGAGGTGGAGT
TACCTGCTATCACAGAACCAGTACATCCTGTCTTTTGGCAAAGAAATGCA
TTTTGCTTGGCTCATTGTGGCTGTAGCATAACAAATTCCTGGACGGCCAT
CAGGGGATAA
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protein sequence of rna10117

>rna10117-protein ID=rna10117-protein|Name=rna10117|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MIPCTQGIHCQCLTPLSCRRLRSQLNHASVTWRAGPPKRLRNIFATDIPR
YPSNKPHCTSMPMINLEEVQELM
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mRNA from alignment at KK037262.1:82482..82793+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10117 ID=rna10117|Name=rna10117|organism=Nannochloropsis gaditana|type=mRNA|length=312bp|location=Sequence derived from alignment at KK037262.1:82482..82793+ (Nannochloropsis gaditana)
ATGATACCTTGTACGCAAGGCATACACTGCCAATGCTTAACCCCCCTCAG
TTGCCGTCGTCTGCGGTCGCAGCTAAACCATGCCTCTGTGACATGGCGCG
CGTAAGTTATATGTTGCTGTTTCAAGCACAAATGTTATGCACAACAGTGA
AAAGTTAAGGAAAAATCCCGACTTCTTTTCACATAAGGAAGTGGCCCTCC
GAAAAGGTTACGAAATATCTTTGCAACGGATATCCCAAGGTATCCCTCGA
ATAAGCCTCATTGTACGTCAATGCCAATGATAAATTTGGAGGAAGTGCAA
GAGCTGATGTGA
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Coding sequence (CDS) from alignment at KK037262.1:82482..82793+

>rna10117 ID=rna10117|Name=rna10117|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at KK037262.1:82482..82793+ (Nannochloropsis gaditana)
ATGATACCTTGTACGCAAGGCATACACTGCCAATGCTTAACCCCCCTCAG
TTGCCGTCGTCTGCGGTCGCAGCTAAACCATGCCTCTGTGACATGGCGCG
CTGGCCCTCCGAAAAGGTTACGAAATATCTTTGCAACGGATATCCCAAGG
TATCCCTCGAATAAGCCTCATTGTACGTCAATGCCAATGATAAATTTGGA
GGAAGTGCAAGAGCTGATGTGAATGATACCTTGTACGCAAGGCATACACT
GCCAATGCTTAACCCCCCTCAGTTGCCGTCGTCTGCGGTCGCAGCTAAAC
CATGCCTCTGTGACATGGCGCGCTGGCCCTCCGAAAAGGTTACGAAATAT
CTTTGCAACGGATATCCCAAGGTATCCCTCGAATAAGCCTCATTGTACGT
CAATGCCAATGATAAATTTGGAGGAAGTGCAAGAGCTGATGTGA
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Synonyms
Publications