rna10112, rna10112 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10112
Unique Name	rna10112
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1166
Alignment location	KK037262.1:74634..76278 +

Link to JBrowse

Properties


Property Name	Value
Product	omega-amidase nit2
Orig transcript id	gnl\|cribi\|Naga_100941g2.9036.mrna
Orig protein id	gnl\|cribi\|Naga_100941g2.9036
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037262.1	supercontig	KK037262.1:74634..76278 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100941g2	gene9815	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10112	rna10112-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20591.1	cds10081	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037262.1:74634..76278+
coding sequence from alignment at KK037262.1:74634..76278+

mRNA sequence

>rna10112 ID=rna10112|Name=rna10112|organism=Nannochloropsis gaditana|type=mRNA|length=1166bp
AGGCCATGGCTAGCGTCTTCCTCGGGGATCTGGACGACGTGATCGGCCCC
TCCCAGGCCTGCGTCAACCCCATCTTCGCCACCGACACCTCCACGCCCCC
CTCCCAGCGGAGCGCCGCTCCTGAAAATGAGGACAAAGGCAGAGCCCAAG
TGACGGTGGAGGCGGCCTGGATGGACGTGGAGGAGGCGGGCGGGGCCGTG
AAACCGGACCTGATCAAAGCGACAGGCCCGGGGTCTGCGGCCTCTGTCTC
CCTGAATGACTGTCTCGCCTGCAGCGGCTGCGTCACGTCCGCCGAGACCG
TCCTCATCAGTCAGCAGAGCACCGACCAATTCCTCCGCATCCTGCGCGGA
GGCCGCGGGGGCCAAACCCAAGCCCTGGTGGTGGCGCTGTCCCCTCAGAG
CCTGGCCTCCCTGGGCGTGGCCTTCGGGTGGGCGGCTCCCCGGCTGCCGC
GTCGTCTGGGCTCCTTCTTCAAGGCCCTCGCTCGCCGACTGGTGGCCCCG
CCGAACGAACCGCTCCCCGTCCACGTCTACTCCACCGCCTCAGCCGCCCC
CGTCGCCCTGGCCGAGGCCACCGCGGAATTCGTCGCCCGCTACCGGCACT
GCCAGCCGCCCCCCCCGGGGATCGCCCTTCATCCCCCCCCACCCTCGCCC
TCTCCCCCCGCCTGGGAGGCCCCTCCCCCCTCGCGCGCGCTCTCCGCCAC
CGAGGACGCCCCCCACCCCGACCTCCCCCTCGGGGTCCCCGCCCCGCCCC
CCCGGCACCAGGCCCTTCCCATGCTCGTCTCCGAGTGCCCGGGCTGGGTC
TGCTACGCGGAGAAAACCACGCCGCAGGTCTTGCCCCTCCTCTCCACCGC
CAAGTCCCCGCAGCAGTGCTTGGGCACGCTGGTGAAGGCGGTGCTGGCGC
CTGCGTCGGGTCTGCGGCCGGGCCAGGTCTGTGTAGTGGCGGTGATGCCC
TGCTACGACAAGAAGCTCGAGGCCTCTCGGAGGGACTTCGTGCACGCGGA
GTGGGGGGAGGTGCCGGAGGTGGATATGGTCTTGACGGCGGGGGAGGTGG
GGGAGCTGGTGAGGGAGTACGGGCCGGGGGAAGAGGAAGGATGTTTAGCG
TGGGGCGGGGGGGAGGGCGGGGGGAGGAGGGGCCGGCCAACGGGCCCAAC
GAAGGGGGCAACGTGA

protein sequence of rna10112

>rna10112-protein ID=rna10112-protein|Name=rna10112|organism=Nannochloropsis gaditana|type=polypeptide|length=329bp
MLSARSLHDTRMALTLPIDLFSPLPALPRTSMAASTRSDAPSPKVKLGLC
QILVGEDKAENIERARRAVEAAARAGAQIVCLPECWNGPYATASFPLFAE
PIPPEAEGVDKARSPSLAMLLEVARDCGVLLVGGSIPEASGGKFYNTCVV
VRPDGRVAALHRKVHLFDIHVPGGISFRESDTLSAGDSLTLVDTSWGFSL
GLGICYDIRFPEMAMVLRARGAKLLLFPGAFNLTTGPAHWELLQRARAVD
NQLFVAAVSPARNPAASYQAWGHTTVVNPWGEVIATTGHEPALLLADLDM
ELVETTRRNIPTAQQKRFDLYTPCSQVPK

mRNA from alignment at KK037262.1:74634..76278+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10112 ID=rna10112|Name=rna10112|organism=Nannochloropsis gaditana|type=mRNA|length=1645bp|location=Sequence derived from alignment at KK037262.1:74634..76278+ (Nannochloropsis gaditana)
TCGACGTGCGTCTGGTCACCCTCAGGCATCACTCACAATGATCACGAGAG
GGCAAAGTCTGTCTCTCGGCCGTTCATCTCCCGTCATccgttctccctcc
gccctcccgccctccctcccaggcccgtgCATGCGCCCCGCCGGCCTCGT
CaggctgccctcctcccgacgGCCCTTCGTTTCCGTGCTTCTCGCATTGT
GCATGCTCACAAGCCTCGTGCGCGCTGCCTTCGTTCCAAGACATAGCCAA
AGAAGCACGCTAGCTACCGGTCTTCTTTTCGcccgctcccccgcctcggc
cgtCGACGCTCCCTGTGGGCGATTCCGCCGAGGTGAATGCTCTCTGCACG
TAGCTTGCACGACACACGCATGGCACTCACCCTCCCGATCGACCTCTTTT
CACCCCTTCCAGCCCTGCCTCGAACCAgcatggccgcctccacccgtTCC
GAtgccccctcgcccaaggtacgctccctccctccctccctaccttctcC
CTGCCGTCTCAAAGCACTGGTCGAATCCCGCAGGTGAAACTGGGGCTCTG
CCAGATCTTGGTGGGCGAAGATAAGGCGGAGAACATCGAGCGGGCTCGAA
GAGCGGTCGAGGCAGCCGCCCGGGCGGGCGCCCAGATCGTCTGTCTGCCA
GGTAGGTGCCGCCGGGTCCACAACTCCAGCCGCCCGGTGCACAACCCCAG
GCTCCCCTTGCTCACACACCCCACGCTGCAGAGTGCTGGAACGGCCCTta
cgccaccgcctccttccctctcttcgcggagcccatcccccccgaggcgg
agggtgtgGACAAGGCGCGCAGCCCCTCTCTGGCCATGCTCCTCGAGGTG
GCTCGCGACTGCGGGGTCTTGCTGGTGGGGGGTTCCATCCCCGAGGCCAG
TGGCGGCAAGTTCTACAACACCTGCGTGGTGGTGCGTCCGGACGGCCGGG
TGGCAGCCCTGCACCGGAAAGTGCACCTCTTCGACATCCACGTCCCTGGC
GGCATCTCCTTCCGCGAATCCGACACCCTCTCCGCCGGCGACAGCCTCAC
CCTGGTAGACACTTCCTGGGGCTTCTCCCTGGGGCTGGGCATCTGCTATG
ACATCCGCTTCCCCGAGATGGCCATGGTCCTTCGGGCGCGGGGCgccaag
ctcctcctcttcccggggGCCTTCAACCTCACCACCGGGCCCGCGCACTG
GGAGCTTCTTCAGAGGGCGCGCGCCGTCGACAACCAGGTGACCGGGaacg
ggcggggagaggggagggctggagtCAAGCTAAGAGAGGCTTCGGATCGA
GAAATGCCTCCTGCCACCGACTGAGTCCTTTCCTcgccggtccctccctc
cccctcactcaGCTCTTCGtggccgccgtctccccTGCGCGGAACCCCGC
CGCCTCTTACCAAGCCTGGGGTCATACCACCGTCGTCAACCCCTGGGGCG
AGGTGATCGCCACCACCGGGCACGAACCCGCTTTGTTGCTCGCGGACCTA
GACATGGAGCTTGTGGAAACCACGCGGCGGAACATCCCCACGGCCCAACA
GAAGCGCTTCGACCTCTACACTCCGTGCTCCCAGGTGCCCAAATAAGTTC
CACACCACCGAAAAATAGACATGGTTGCGTCTTCTGTCTTACTCC

Coding sequence (CDS) from alignment at KK037262.1:74634..76278+

>rna10112 ID=rna10112|Name=rna10112|organism=Nannochloropsis gaditana|type=CDS|length=3960bp|location=Sequence derived from alignment at KK037262.1:74634..76278+ (Nannochloropsis gaditana)
ATGCTCTCTGCACGTAGCTTGCACGACACACGCATGGCACTCACCCTCCC
GATCGACCTCTTTTCACCCCTTCCAGCCCTGCCTCGAACCAgcatggccg
cctccacccgtTCCGAtgccccctcgcccaagGTGAAACTGGGGCTCTGC
CAGATCTTGGTGGGCGAAGATAAGGCGGAGAACATCGAGCGGGCTCGAAG
AGCGGTCGAGGCAGCCGCCCGGGCGGGCGCCCAGATCGTCTGTCTGCCAG
AGTGCTGGAACGGCCCTtacgccaccgcctccttccctctcttcgcggag
cccatcccccccgaggcggagggtgtgGACAAGGCGCGCAGCCCCTCTCT
GGCCATGCTCCTCGAGGTGGCTCGCGACTGCGGGGTCTTGCTGGTGGGGG
GTTCCATCCCCGAGGCCAGTGGCGGCAAGTTCTACAACACCTGCGTGGTG
GTGCGTCCGGACGGCCGGGTGGCAGCCCTGCACCGGAAAGTGCACCTCTT
CGACATCCACGTCCCTGGCGGCATCTCCTTCCGCGAATCCGACACCCTCT
CCGCCGGCGACAGCCTCACCCTGGTAGACACTTCCTGGGGCTTCTCCCTG
GGGCTGGGCATCTGCTATGACATCCGCTTCCCCGAGATGGCCATGGTCCT
TCGGGCGCGGGGCgccaagctcctcctcttcccggggGCCTTCAACCTCA
CCACCGGGCCCGCGCACTGGGAGCTTCTTCAGAGGGCGCGCGCCGTCGAC
AACCAGCTCTTCGtggccgccgtctccccTGCGCGGAACCCCGCCGCCTC
TTACCAAGCCTGGGGTCATACCACCGTCGTCAACCCCTGGGGCGAGGTGA
TCGCCACCACCGGGCACGAACCCGCTTTGTTGCTCGCGGACCTAGACATG
GAGCTTGTGGAAACCACGCGGCGGAACATCCCCACGGCCCAACAGAAGCG
CTTCGACCTCTACACTCCGTGCTCCCAGGTGCCCAAATAAATGCTCTCTG
CACGTAGCTTGCACGACACACGCATGGCACTCACCCTCCCGATCGACCTC
TTTTCACCCCTTCCAGCCCTGCCTCGAACCAgcatggccgcctccacccg
tTCCGAtgccccctcgcccaagGTGAAACTGGGGCTCTGCCAGATCTTGG
TGGGCGAAGATAAGGCGGAGAACATCGAGCGGGCTCGAAGAGCGGTCGAG
GCAGCCGCCCGGGCGGGCGCCCAGATCGTCTGTCTGCCAGAGTGCTGGAA
CGGCCCTtacgccaccgcctccttccctctcttcgcggagcccatccccc
ccgaggcggagggtgtgGACAAGGCGCGCAGCCCCTCTCTGGCCATGCTC
CTCGAGGTGGCTCGCGACTGCGGGGTCTTGCTGGTGGGGGGTTCCATCCC
CGAGGCCAGTGGCGGCAAGTTCTACAACACCTGCGTGGTGGTGCGTCCGG
ACGGCCGGGTGGCAGCCCTGCACCGGAAAGTGCACCTCTTCGACATCCAC
GTCCCTGGCGGCATCTCCTTCCGCGAATCCGACACCCTCTCCGCCGGCGA
CAGCCTCACCCTGGTAGACACTTCCTGGGGCTTCTCCCTGGGGCTGGGCA
TCTGCTATGACATCCGCTTCCCCGAGATGGCCATGGTCCTTCGGGCGCGG
GGCgccaagctcctcctcttcccggggGCCTTCAACCTCACCACCGGGCC
CGCGCACTGGGAGCTTCTTCAGAGGGCGCGCGCCGTCGACAACCAGCTCT
TCGtggccgccgtctccccTGCGCGGAACCCCGCCGCCTCTTACCAAGCC
TGGGGTCATACCACCGTCGTCAACCCCTGGGGCGAGGTGATCGCCACCAC
CGGGCACGAACCCGCTTTGTTGCTCGCGGACCTAGACATGGAGCTTGTGG
AAACCACGCGGCGGAACATCCCCACGGCCCAACAGAAGCGCTTCGACCTC
TACACTCCGTGCTCCCAGGTGCCCAAATAAATGCTCTCTGCACGTAGCTT
GCACGACACACGCATGGCACTCACCCTCCCGATCGACCTCTTTTCACCCC
TTCCAGCCCTGCCTCGAACCAgcatggccgcctccacccgtTCCGAtgcc
ccctcgcccaagGTGAAACTGGGGCTCTGCCAGATCTTGGTGGGCGAAGA
TAAGGCGGAGAACATCGAGCGGGCTCGAAGAGCGGTCGAGGCAGCCGCCC
GGGCGGGCGCCCAGATCGTCTGTCTGCCAGAGTGCTGGAACGGCCCTtac
gccaccgcctccttccctctcttcgcggagcccatcccccccgaggcgga
gggtgtgGACAAGGCGCGCAGCCCCTCTCTGGCCATGCTCCTCGAGGTGG
CTCGCGACTGCGGGGTCTTGCTGGTGGGGGGTTCCATCCCCGAGGCCAGT
GGCGGCAAGTTCTACAACACCTGCGTGGTGGTGCGTCCGGACGGCCGGGT
GGCAGCCCTGCACCGGAAAGTGCACCTCTTCGACATCCACGTCCCTGGCG
GCATCTCCTTCCGCGAATCCGACACCCTCTCCGCCGGCGACAGCCTCACC
CTGGTAGACACTTCCTGGGGCTTCTCCCTGGGGCTGGGCATCTGCTATGA
CATCCGCTTCCCCGAGATGGCCATGGTCCTTCGGGCGCGGGGCgccaagc
tcctcctcttcccggggGCCTTCAACCTCACCACCGGGCCCGCGCACTGG
GAGCTTCTTCAGAGGGCGCGCGCCGTCGACAACCAGCTCTTCGtggccgc
cgtctccccTGCGCGGAACCCCGCCGCCTCTTACCAAGCCTGGGGTCATA
CCACCGTCGTCAACCCCTGGGGCGAGGTGATCGCCACCACCGGGCACGAA
CCCGCTTTGTTGCTCGCGGACCTAGACATGGAGCTTGTGGAAACCACGCG
GCGGAACATCCCCACGGCCCAACAGAAGCGCTTCGACCTCTACACTCCGT
GCTCCCAGGTGCCCAAATAAATGCTCTCTGCACGTAGCTTGCACGACACA
CGCATGGCACTCACCCTCCCGATCGACCTCTTTTCACCCCTTCCAGCCCT
GCCTCGAACCAgcatggccgcctccacccgtTCCGAtgccccctcgccca
agGTGAAACTGGGGCTCTGCCAGATCTTGGTGGGCGAAGATAAGGCGGAG
AACATCGAGCGGGCTCGAAGAGCGGTCGAGGCAGCCGCCCGGGCGGGCGC
CCAGATCGTCTGTCTGCCAGAGTGCTGGAACGGCCCTtacgccaccgcct
ccttccctctcttcgcggagcccatcccccccgaggcggagggtgtgGAC
AAGGCGCGCAGCCCCTCTCTGGCCATGCTCCTCGAGGTGGCTCGCGACTG
CGGGGTCTTGCTGGTGGGGGGTTCCATCCCCGAGGCCAGTGGCGGCAAGT
TCTACAACACCTGCGTGGTGGTGCGTCCGGACGGCCGGGTGGCAGCCCTG
CACCGGAAAGTGCACCTCTTCGACATCCACGTCCCTGGCGGCATCTCCTT
CCGCGAATCCGACACCCTCTCCGCCGGCGACAGCCTCACCCTGGTAGACA
CTTCCTGGGGCTTCTCCCTGGGGCTGGGCATCTGCTATGACATCCGCTTC
CCCGAGATGGCCATGGTCCTTCGGGCGCGGGGCgccaagctcctcctctt
cccggggGCCTTCAACCTCACCACCGGGCCCGCGCACTGGGAGCTTCTTC
AGAGGGCGCGCGCCGTCGACAACCAGCTCTTCGtggccgccgtctccccT
GCGCGGAACCCCGCCGCCTCTTACCAAGCCTGGGGTCATACCACCGTCGT
CAACCCCTGGGGCGAGGTGATCGCCACCACCGGGCACGAACCCGCTTTGT
TGCTCGCGGACCTAGACATGGAGCTTGTGGAAACCACGCGGCGGAACATC
CCCACGGCCCAACAGAAGCGCTTCGACCTCTACACTCCGTGCTCCCAGGT
GCCCAAATAA

Synonyms

Publications