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Properties
| Property Name | Value |
|---|
| Product | Rhodopsin-like GPCR transmembrane domain protein |
| Orig transcript id | gnl|cribi|Naga_100112g8.5452.mrna |
| Orig protein id | gnl|cribi|Naga_100112g8.5452 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:956395..958657 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1011 ID=rna1011|Name=rna1011|organism=Nannochloropsis gaditana|type=mRNA|length=2073bp
ATGTATTGCTGCTCGAGCAAAAGGAGCTTTTCCAGAAGATTAATGTTTGT
GTTTCAGGGCCAGAGCCCCCGGACAGGGCGGATGCTACTCCTTCCCTCGT
TGCTACTTCTCACTCTCCTCACAAGAATGGCACATTCAAGTTTCTGGACT
ACTGGAAACGCTGGCTCGAGTAGAATGGGTGGACGAAGCCCCTCTCGGGC
GCTAGCTTTCATGGGATCCAAGAGGAAAATTTCTGGTTTGAGCCTACCAG
GCAACGGCACCGCCAGTTTCTTGACCACAGGGAGCAGCGTCCTGCACATT
CACAACAGCAACGTGACGCTGCTCTCGCTCGACTCAAACACGCTGCCTTT
GCAAGCTAGAGGAGGTCTGAACACGAACAGCACGGGCTCTGGCGGTGTGG
TGGGCCTTTCCTCGGGCACAGCCGCCACCTCAAGCGGGGGCCGGGGCCTT
GGGGGCGCTCGAGGACAGGGCCTGGCGGGACAAGGGGGGGGCGCCTTGGA
CCAGCTGGCTGGTGAGGCGCTTCAGACCATAGGAGGGGCCTTGTTTGAGG
CCACCTGTTTCTACATCGCGAGCCGGATCATCATGGGCGTCCGGAACCTG
TGCGGGAGGACCTTCGTGAAACCCACGGGAGTGAAATTCAGCGACGTGAT
TGGCGTGGACGAGGCCAAGCAGGAGGTTCAGGAGCTTGTGGAGTACTTGA
AGGAGCCGATGCGGTACAAGAAGCTAGGTGCCAAGATCCCCCGAGGCATT
CTGTTGGTAGGGCCGCCTGGCGTAGGCAAGACGATGTTGGCACGCGCCAT
CGCCGGCGAGGCGAGCTGCCCCTTTTACTACGCGTCAGGATCCGACTTTG
CGAATCCATACTGGGGCATGGGTGTGCAAAAGATCAAGAAGCTCTTCCAC
CAAGCACGTCGCTCAAAGCGTTCCATCATTTTTATCGATGAGCTCGACTC
TTTGGCGAGGGCCCGAAAATCTTCCCTGTCGGGGGGCAGCGCGGAAATGG
ACGCGGAGAATACGCTGAACCAGCTCCTGACCGAGATGGACGGCTTCCAG
ACCCAGGACAACGTCATCGTCCTCGCTTCCACCAACCGCGCGGACGTCTT
GGACCGAGCGGCCATGCGCCCCGGGCGCTTTGACAGGAAAGTCTTCATGG
ACGTTCCCGACGTGCAGGGACGCGAGGAACACTTCAAGCGTCTGCTGAAG
AAGTTTACCTTGGCCAAACCTGTGGAGGAGCTGGCGCCCTTGATGGCCCG
CATGAGTCCCGGCTACAGCGGAGCAGACATTGAGAACGTCGTCAACGAGG
CCGCCTTGAGGGCCGCTAAACACAATCGGAGCAGCGTCACTGAAGACGAC
CTGAGCTGGGCGACGGAGCGTACGGGCTTTGGAGTCGAGCGAAGGGGCAA
GATGACGCCCGCGGAGCTCCGGCGCACAGCCGTCCACGAGGCGGGGCACG
CCTTGATCGCGTATTTTATCCCAGACGTGCAAGCTCCCATCAAAATCTCC
ATTATCAACAGAGGCAAGGTGGGCGGATACAATTTGATGGGAGAAAGCAA
CCATACGTACCACACGGAGGCGCGGTTAAGGGACGAGATTTGCGTATTCC
TAGGGGGTAGGGTGGCGGAAGAAATGGTGTTGGGCGAAGCGTCCTCAGGT
GCTTATGATGACCTGCGGAAGGCGAGTGCGCTGAGTCGCGGGATGGTGGA
AAATCTGGGGTACGGAAAAAGAACAGGGCTGCTTTCGTACGGAGCAGGAG
GGCAAGGGGTAGGGGAGGTGAGCCAAGCAGCTCTGCGATTGCTCGAGGAA
GAGGCGCAGAGCATCTTGGGCTCGGAGTACACACGGGCCAAGACTTTGGT
GCAAAAACACAGAAAAGAGCTGGAGGCCTTGGTGGAGTTGTTGTTGAAGA
ACGAGGTCGTGCATGAGCATGAGTTGGAGGCGGTTTTGGGCCCCCGCGTG
GCTGATGTTGGTGTGAGAAGAGGTTTCACGGAGAACGTTTTACGTAGATT
CAGCAAGAAGTCTTTTTGTAAATGTAACAAATTTCGACCCAACCAGTTTA
AACGCTTGATCGAACGCGATTGA back to topprotein sequence of rna1011 >rna1011-protein ID=rna1011-protein|Name=rna1011|organism=Nannochloropsis gaditana|type=polypeptide|length=438bp
MYSCSGRGRIPLKGSACWIVFLILQGLGSVTAKIVSGQVALSSGKPWAYL
SKFSYSLGTGNFTLEVTEASSKRQKPTPSFGKSNGARFFLYLDEDWEDAL
AAPTCQEKLKFAKWQSASLRSAPPLKHAVSQSIRPHFWYFVLADCEAEPS
ATLLNYRLKMYNADGSHFSHEEKAPSRLLPVLAVGFLISMGPLLVLLQSY
RSRTRGQRLHPSILNLGAALLLFLTSLTLETVNYWMYAKNGEGLRLTDIG
AELANWLAQLVVSLELLSIAWVWSVDTVLTPSRKQRAGRSIMYRMVGGLV
VLHVACILLGRVYDDAHSKYHESETVWALGLIGMRLLLGGLFAAGVQNLL
VRENNLLQRTFLMRLGALGGAYFISIPVVITVASTFFARYLRHQVVTVGS
AAVQVFSLVGLSILLLTRNEYTELSSLSSCSLPSIKLA back to topmRNA from alignment at CM002456.1:956395..958657- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1011 ID=rna1011|Name=rna1011|organism=Nannochloropsis gaditana|type=mRNA|length=2263bp|location=Sequence derived from alignment at CM002456.1:956395..958657- (Nannochloropsis gaditana)
TATCAATATTCAGCGCATCTGAGGTCTGCGTTATCCTTTACAATCTTAAA
CTGAGATGCACCTTGTGCCCCCTCTCGATAAATGCACATTTTCTCGCACA
GGAATCTGTCGATAGGCCACGGTATTAAAGAGGCAATCTGTCCTTGCCCT
AGAAATAGCGATTGGCTGGAGAAAGGATGTACTCTTGCTCTGGTCGCGGC
CGTATACCCCTAAAAGGCTCTGCTTGCTGGATTGTCTTTCTCATTCTTCA
GGGCCTTGGATCGGTCACTGCTAAAATCGTGTCAGGACAAGTAGCTCTAA
GCAGTGGCAAACCCTGGGCATATCTCAGCAAGTTTTCGTATTCTCTTGGT
ACAGGCAACTTCACTCTGGAAGTCACAGAGGCATCGGTACGGATTGTTTT
TTCCCCACTCCTTTTTGAGGGGGGGAAGAGAGGGAGGGAGAAGATGGAGA
GTAGAGGGTATTTGTCAGACCGAGTTCAGCTGTACACGCTTATTGATAAC
TGTAGTTGAAACTTCACTTGCATATCATTTCCACCCTAATGAGTACTCTT
TTTCCTTCTTACCCTCACTGTGTAGTCAAAACGCCAGAAGCCCACTCCCT
CCTTCGGCAAGTCAAATGGCGCCCGCTTCTTTCTCTATTTAGACGAGGAC
TGGGAGGATGCCTTGGCCGCCCCAACATGTCAGGAGAAACTCAAATTTGC
TAAATGGCAATCAGCATCCCTCCGCTCGGCTCCCCCCCTCAAGCATGCGG
TCAGTCAGAGCATTCGGCCGCACTTCTGGTATTTCGTTCTCGCGGACTGC
GAGGCCGAACCGAGCGCCACCCTTTTGAACTATCGCCTTAAGATGTACAA
CGCCGACGGGTCCCATTTTTCACACGAGGAGAAGGCCCCTTCACGTCTTC
TTCCCGTCCTGGCAGTGGGCTTCCTCATCTCCATGGGCCCACTCCTTGTC
CTCCTCCAGAGCTATCGAAGCCGCACCCGTGGCCAGCGCCTGCACCCCTC
CATCCTGAATCTGGGCGCGGCCTTGCTTCTCTTCCTTACCAGCTTGACCT
TGGAAACAGTCAACTACTGGATGTACGCGAAGAACGGGGAGGGGCTTCGC
CTGACCGATATCGGCGCCGAGCTTGCGAATTGGCTGGCGCAGCTGGTAGT
CTCGCTCGAGCTCCTCAGCATCGCCTGGGTCTGGAGCGTGGACACTGTCC
TGACCCCCTCGCGCAAACAGCGGGCGGGTCGCAGCATCATGTACCGAATG
GTGGGAGGCCTGGTCGTCCTCCATGTCGCCTGCATCCTGCTAGGACGCGT
GTACGACGACGCGCACTCCAAATACCACGAGAGCGAGACGGTGTGGGCGC
TCGGCCTGATCGGGATGCGCCTCCTCCTCGGCGGTCTCTTTGCCGCGGGG
GTGCAAAACCTGTTGGTCCGGGAGAACAACTTGCTGCAACGGACTTTCCT
TATGCGCCTGGGGGCCTTGGGGGGCGCCTACTTCATCTCCATTCCCGTCG
TCATCACCGTGGCATCTACCTTCTTCGCGCGCTACCTGCGGCATCAAGTC
GTGACCGTCGGGTCGGCAGCTGTCCAGGTCTTCTCATTGGTCGGGCTCTC
TATCTTACTGCTAACCCGCAACGAATACACGGAGTTATCCTCACTCTCAT
CCTGCTCGCTGCCCTCGATCAAGCTAGCCTAAACTGACGAGGAAGATAGC
GGAGCGACGAGAAGCCCGGAAAACAGAGCGGTGGATTGACTGAAAGACAC
AATTAGATTAGAAACATCCCACTGAGCAAAAATTCATAATGACATGTAGA
AAGCCATAAATCAGTCCGAGCCGAGGATGTGAAAGTACTCACAAGGGAAG
TGCCGGGCACCTCGCCGTAAACCTTACTGTCTTGCATCGATTTCCGAAAA
TCTGATAACAAATATCGGCTTGAGAAAAAGAGCGAGAAGAAGTGCTGAAT
GATAAGTGCTATTTTTCTCGTTAGCGGGCGCACTCGCTGTAGGTAGCGCT
TGTTTTTATTGGGGACTTCCTTTAAAAAGGTACCGATCTTTGTCCAAAGA
CGTGACAATAGATGCATGGATGCTTCTTACACATTCAGGATGGCGTTGGG
CGCGGTAGAAGAGCATGTCAGAACGATAGAAGAAAATGCATTGCTGGCGT
AGATAATTAGAAAACATGCGTCACACCAGTGGTTTGATCGCTTTTTGCTG
CTTTTCATCCTGAAAAAAAAGCAAAAACCATAAATTCATGGCAGTAGATT
GAAGAAAATTTTC back to topCoding sequence (CDS) from alignment at CM002456.1:956395..958657- >rna1011 ID=rna1011|Name=rna1011|organism=Nannochloropsis gaditana|type=CDS|length=2634bp|location=Sequence derived from alignment at CM002456.1:956395..958657- (Nannochloropsis gaditana)
TCAAAACGCCAGAAGCCCACTCCCTCCTTCGGCAAGTCAAATGGCGCCCG
CTTCTTTCTCTATTTAGACGAGGACTGGGAGGATGCCTTGGCCGCCCCAA
CATGTCAGGAGAAACTCAAATTTGCTAAATGGCAATCAGCATCCCTCCGC
TCGGCTCCCCCCCTCAAGCATGCGGTCAGTCAGAGCATTCGGCCGCACTT
CTGGTATTTCGTTCTCGCGGACTGCGAGGCCGAACCGAGCGCCACCCTTT
TGAACTATCGCCTTAAGATGTACAACGCCGACGGGTCCCATTTTTCACAC
GAGGAGAAGGCCCCTTCACGTCTTCTTCCCGTCCTGGCAGTGGGCTTCCT
CATCTCCATGGGCCCACTCCTTGTCCTCCTCCAGAGCTATCGAAGCCGCA
CCCGTGGCCAGCGCCTGCACCCCTCCATCCTGAATCTGGGCGCGGCCTTG
CTTCTCTTCCTTACCAGCTTGACCTTGGAAACAGTCAACTACTGGATGTA
CGCGAAGAACGGGGAGGGGCTTCGCCTGACCGATATCGGCGCCGAGCTTG
CGAATTGGCTGGCGCAGCTGGTAGTCTCGCTCGAGCTCCTCAGCATCGCC
TGGGTCTGGAGCGTGGACACTGTCCTGACCCCCTCGCGCAAACAGCGGGC
GGGTCGCAGCATCATGTACCGAATGGTGGGAGGCCTGGTCGTCCTCCATG
TCGCCTGCATCCTGCTAGGACGCGTGTACGACGACGCGCACTCCAAATAC
CACGAGAGCGAGACGGTGTGGGCGCTCGGCCTGATCGGGATGCGCCTCCT
CCTCGGCGGTCTCTTTGCCGCGGGGGTGCAAAACCTGTTGGTCCGGGAGA
ACAACTTGCTGCAACGGACTTTCCTTATGCGCCTGGGGGCCTTGGGGGGC
GCCTACTTCATCTCCATTCCCGTCGTCATCACCGTGGCATCTACCTTCTT
CGCGCGCTACCTGCGGCATCAAGTCGTGACCGTCGGGTCGGCAGCTGTCC
AGGTCTTCTCATTGGTCGGGCTCTCTATCTTACTGCTAACCCGCAACGAA
TACACGGAGTTATCCTCACTCTCATCCTGCTCGCTGCCCTCGATCAAGCT
AGCCTAAATGTACTCTTGCTCTGGTCGCGGCCGTATACCCCTAAAAGGCT
CTGCTTGCTGGATTGTCTTTCTCATTCTTCAGGGCCTTGGATCGGTCACT
GCTAAAATCGTGTCAGGACAAGTAGCTCTAAGCAGTGGCAAACCCTGGGC
ATATCTCAGCAAGTTTTCGTATTCTCTTGGTACAGGCAACTTCACTCTGG
AAGTCACAGAGGCATCGTCAAAACGCCAGAAGCCCACTCCCTCCTTCGGC
AAGTCAAATGGCGCCCGCTTCTTTCTCTATTTAGACGAGGACTGGGAGGA
TGCCTTGGCCGCCCCAACATGTCAGGAGAAACTCAAATTTGCTAAATGGC
AATCAGCATCCCTCCGCTCGGCTCCCCCCCTCAAGCATGCGGTCAGTCAG
AGCATTCGGCCGCACTTCTGGTATTTCGTTCTCGCGGACTGCGAGGCCGA
ACCGAGCGCCACCCTTTTGAACTATCGCCTTAAGATGTACAACGCCGACG
GGTCCCATTTTTCACACGAGGAGAAGGCCCCTTCACGTCTTCTTCCCGTC
CTGGCAGTGGGCTTCCTCATCTCCATGGGCCCACTCCTTGTCCTCCTCCA
GAGCTATCGAAGCCGCACCCGTGGCCAGCGCCTGCACCCCTCCATCCTGA
ATCTGGGCGCGGCCTTGCTTCTCTTCCTTACCAGCTTGACCTTGGAAACA
GTCAACTACTGGATGTACGCGAAGAACGGGGAGGGGCTTCGCCTGACCGA
TATCGGCGCCGAGCTTGCGAATTGGCTGGCGCAGCTGGTAGTCTCGCTCG
AGCTCCTCAGCATCGCCTGGGTCTGGAGCGTGGACACTGTCCTGACCCCC
TCGCGCAAACAGCGGGCGGGTCGCAGCATCATGTACCGAATGGTGGGAGG
CCTGGTCGTCCTCCATGTCGCCTGCATCCTGCTAGGACGCGTGTACGACG
ACGCGCACTCCAAATACCACGAGAGCGAGACGGTGTGGGCGCTCGGCCTG
ATCGGGATGCGCCTCCTCCTCGGCGGTCTCTTTGCCGCGGGGGTGCAAAA
CCTGTTGGTCCGGGAGAACAACTTGCTGCAACGGACTTTCCTTATGCGCC
TGGGGGCCTTGGGGGGCGCCTACTTCATCTCCATTCCCGTCGTCATCACC
GTGGCATCTACCTTCTTCGCGCGCTACCTGCGGCATCAAGTCGTGACCGT
CGGGTCGGCAGCTGTCCAGGTCTTCTCATTGGTCGGGCTCTCTATCTTAC
TGCTAACCCGCAACGAATACACGGAGTTATCCTCACTCTCATCCTGCTCG
CTGCCCTCGATCAAGCTAGCCTAAATGTACTCTTGCTCTGGTCGCGGCCG
TATACCCCTAAAAGGCTCTGCTTGCTGGATTGTCTTTCTCATTCTTCAGG
GCCTTGGATCGGTCACTGCTAAAATCGTGTCAGGACAAGTAGCTCTAAGC
AGTGGCAAACCCTGGGCATATCTCAGCAAGTTTTCGTATTCTCTTGGTAC
AGGCAACTTCACTCTGGAAGTCACAGAGGCATCG back to top
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