rna10106, rna10106 (mRNA) Nannochloropsis gaditana

Overview
Namerna10106
Unique Namerna10106
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1018
Alignment locationKK037262.1:61089..62677 +

Link to JBrowse

Properties
Property NameValue
Productacetylornithine and succinylornithine aminotransferase
Orig transcript idgnl|cribi|Naga_100874g1.10037.mrna
Orig protein idgnl|cribi|Naga_100874g1.10037
GeneACOAT
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:61089..62677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ACOATgene9809Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10106rna10106-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20598.1cds10075Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10106 ID=rna10106|Name=rna10106|organism=Nannochloropsis gaditana|type=mRNA|length=1018bp
TGCGGGGGTTGAGACGTGGCGGTGCGACAGACACCGTGCGTTCAGGCTGA
CGCCGTCCTCTGGGGTGACGCGCAGGTGTGTGAAAGTATGGCAACGTGTC
GCAGTAGCGTGTGGGCGAGGGAAGGGAGGGAAGTCGTGTGTGCACCGGGA
AGGGTCATTTAAGTGCAAGCAGATCCCTCCCTCCGAGAGGGGGAGAGGTT
TGAAGAAAGGAAGGGGGGGGAACGAGCTCGATTCATTTATATTGGAAGGC
ATGCACAGAGCCTTCAAAGGGGCGAACACGATTGAATTGTCGATGTGTGG
GCATTAGAGGAGGGTGATGTTGGAGGTTGTGGGGTGTGTTTTGATACGCG
TGGCAGATGGGAAGGCTCGTTGCTTCGAAGCCCGTGCACCTCCCCGTCGG
CCGGCACATGTATATACATGTATATCCCTTCCGTGCCGCGTGCCGTGTGA
ACATGGGTGGGACTCGTGCATAACATGCGCGTCACGGTCCATTGAAATCT
TTGACGAAGCCATGCATGGCCGTCTGGCGGCTTTGGCATGTACATATATA
GCATTTTATCACCGAGCGGCTTTGGCATGTACATATATAGCATTTTATCA
CCGCTATCGAATCAATACCCAGGAGCGTTACGATTTCCTCCCCCCCCACC
CCCTCCCGTGCGCAAAACGACTTCCGCGTTACCATCCAGCACCGTGAGTG
TGTTTTATGTCCTGGTCGGTCCCCATCGGGCATGGTGTTCTTATAAATTC
TCGTCATGAAAGAAGGAGTAGGTGGGAGGGCACCGCAGAGGGTCTGATAT
ATAATATATATATATATATACATCCCAAAACTTTCCTCCCGAGCACCGAC
CACGTCGAAAGAAAGTAACAAGCCTAATGTCGAAAGAAAATGTGGTGGCG
GTGGGAACGAGAGGGGTGGTGGAGGCGACGTGTCAGTGCCAAGCGGGGTG
ACAAAGGGCCTTCAAGGCGGGGGGAGAGCCTCCCTACCGCAAAAAAGAAA
TTTGACACCCCACGATGA
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protein sequence of rna10106

>rna10106-protein ID=rna10106-protein|Name=rna10106|organism=Nannochloropsis gaditana|type=polypeptide|length=476bp
MHRTAFTVLFTSSLFSHSVGAFPLLLLRRLAPPAFQASEPSPAPMRLAAS
PENAARPLPAEAAVFAQNIMATYGRYPITMVKGQGVRLWDSTGKEYLDFV
AGISTCCLGHANPGLTAAVTEQLGKLHHVSNLYYTAEQGRLGAWLVEHSV
ADKVFFCNSGAEANEAAIKLARKHAHEKLGLGEPVIITAKASFHGRTLAA
ITATGQPKYHRGFEPLVPGFVYVDYNDAGALERTVRRINFWGRLRGWLPG
KKRRGVAAILMEALQGEGGIRPGSRSFFAKARALCDETGALLMVDEVQTG
VGRTGRLWGYEQLGVEPDVFTSAKALGGGVPIGAMLCKERANVFQPGDHA
STFGGNPLACAAGLAVTAALEREHLVENAAARGESLRAGLRKLQAQYPGV
IEDVRGWGLINGVELSEASGLLAAPVVQASIDEGLLLVAAGARVVRFVPP
LVVSEGEVEEAVARFGKALAKAMAAR
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mRNA from alignment at KK037262.1:61089..62677+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10106 ID=rna10106|Name=rna10106|organism=Nannochloropsis gaditana|type=mRNA|length=1589bp|location=Sequence derived from alignment at KK037262.1:61089..62677+ (Nannochloropsis gaditana)
tAGTTCTAACAGGGttggagggcctggaggaaagcgagtgTTTTTGTGCT
GGTTTTCGCTGTCTtgaccttcccgccccttgGTCCCGCGCGCCGTCGCA
CCATTAGTTTGGGGGACAGAGCGTTGCCTTTTGGAGACTTGACCAGGTGT
TTCTCACCATGCACCGCACCGCATTCACGGTGCttttcacgtcctccctg
tTTTCCCACTCCGTCGgtgcctttcccctccttctcctccgccgcctcgc
cccgcccgccttccagGCCTCGGAACCTTCCCCAGCCCCCATgcgcctgg
ccgcctccccggaGAACGCCGCCAGACCCCTGCCGGCGGAAGCCGCCGTT
TTTGCCCAGAACATCATGGCTACCTACGGGCGGTACCCCATCACGATGGT
GAAGGGCCAGGGCGTGAGGTTGTGGGACTCTACGGGGAAGGAATACTTGG
ACTTTGTGGCGGGCATTTCCACCTGTTGCTTGGGCCACGCAAACCCGGGT
CTGACCGCGGCGGTGACGGAGCAACTGGGGAAACTGCACCACGTCTCCAA
TTTGTACTACACCGCCGAGCAGGGTCGCCTGGGGGCCTGGCTGGTGGAGC
ATTCCGTGGCGGACAAGGTGTTTTTCTGCAATTCCGGGGCCGAAGCCAAC
GAAGCCGCCATCAAACTGGCGCGGAAGCACGCGCACGAGAAGCTGGGCTT
GGGCGAGCCCGTCATCAtcacggccaaggcctccttccACGGGCGGACGT
TGGCCGCCATCACCGCCACGGGACAGCCGAAATACCACCGGGGCTTCGAG
CCCCTGGTCCCGGGATTTGTCTACGTCGACTACAACGACGCCGGGGCCTT
GGAGCGGACGGTGCGTCGGATCAATTTCTGGGGCCGCCTCCGCGGGTGGC
TCCCGGGGAAGAAACGGCGCGGGGTGGCGGCGATCCTGATGGAGGCCttg
caaggggagggcgggatccGACCGGGGAGCCGGAGCTTCTTCGCCAAGGC
TCGAGCGCTCTGCGACGAGACTGGGGCCCTGCTgatggtggacgaggtcC
AAACGGGCGTGGGCCGGACGGGGCGGCTCTGGGGCTACGAGCAGCTGGGG
GTAGAGCCCGACGTGTTCACGTCCGCCAAGGctctgggggggggcgtgcc
GATCGGGGCCATGCTCTGCAAAGAGCGGGCCAACGTGTTCCAGCCTGGGG
ACCACGCCTCCACGTTCGGGGGAAACCCGCTGGCCTGCgcggcggggctg
gcggtgACGGCCGCCTTGGAACGAGAGCATTTGGTCGAGAACGCCGCGGC
TCGCGGGGAGAGTCTGCGGGCGGGGTTAAGGAAACTTCAAGCCCAGTACC
CGGGCGTGATCGAGGACGTGCGGGGGTGGGGTCTGATCAACGGGGTGGAG
CTGAGCGAGGCGAGCGGCTTGCTCGCGGCCCCGGTGGTGCAGGCCTCCAT
CGACGAGGGCCTGctcctggtggcggcgggggctcGCGTCGTCCGCTTTG
TCCCGCCCTTGGTCgtgagcgagggggaagtggaggaggcggtcgccAGG
TTCGGGAaagccttggccaaggcgatggcggcgcggtga
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Coding sequence (CDS) from alignment at KK037262.1:61089..62677+

>rna10106 ID=rna10106|Name=rna10106|organism=Nannochloropsis gaditana|type=CDS|length=1431bp|location=Sequence derived from alignment at KK037262.1:61089..62677+ (Nannochloropsis gaditana)
ATGCACCGCACCGCATTCACGGTGCttttcacgtcctccctgtTTTCCCA
CTCCGTCGgtgcctttcccctccttctcctccgccgcctcgccccgcccg
ccttccagGCCTCGGAACCTTCCCCAGCCCCCATgcgcctggccgcctcc
ccggaGAACGCCGCCAGACCCCTGCCGGCGGAAGCCGCCGTTTTTGCCCA
GAACATCATGGCTACCTACGGGCGGTACCCCATCACGATGGTGAAGGGCC
AGGGCGTGAGGTTGTGGGACTCTACGGGGAAGGAATACTTGGACTTTGTG
GCGGGCATTTCCACCTGTTGCTTGGGCCACGCAAACCCGGGTCTGACCGC
GGCGGTGACGGAGCAACTGGGGAAACTGCACCACGTCTCCAATTTGTACT
ACACCGCCGAGCAGGGTCGCCTGGGGGCCTGGCTGGTGGAGCATTCCGTG
GCGGACAAGGTGTTTTTCTGCAATTCCGGGGCCGAAGCCAACGAAGCCGC
CATCAAACTGGCGCGGAAGCACGCGCACGAGAAGCTGGGCTTGGGCGAGC
CCGTCATCAtcacggccaaggcctccttccACGGGCGGACGTTGGCCGCC
ATCACCGCCACGGGACAGCCGAAATACCACCGGGGCTTCGAGCCCCTGGT
CCCGGGATTTGTCTACGTCGACTACAACGACGCCGGGGCCTTGGAGCGGA
CGGTGCGTCGGATCAATTTCTGGGGCCGCCTCCGCGGGTGGCTCCCGGGG
AAGAAACGGCGCGGGGTGGCGGCGATCCTGATGGAGGCCttgcaagggga
gggcgggatccGACCGGGGAGCCGGAGCTTCTTCGCCAAGGCTCGAGCGC
TCTGCGACGAGACTGGGGCCCTGCTgatggtggacgaggtcCAAACGGGC
GTGGGCCGGACGGGGCGGCTCTGGGGCTACGAGCAGCTGGGGGTAGAGCC
CGACGTGTTCACGTCCGCCAAGGctctgggggggggcgtgccGATCGGGG
CCATGCTCTGCAAAGAGCGGGCCAACGTGTTCCAGCCTGGGGACCACGCC
TCCACGTTCGGGGGAAACCCGCTGGCCTGCgcggcggggctggcggtgAC
GGCCGCCTTGGAACGAGAGCATTTGGTCGAGAACGCCGCGGCTCGCGGGG
AGAGTCTGCGGGCGGGGTTAAGGAAACTTCAAGCCCAGTACCCGGGCGTG
ATCGAGGACGTGCGGGGGTGGGGTCTGATCAACGGGGTGGAGCTGAGCGA
GGCGAGCGGCTTGCTCGCGGCCCCGGTGGTGCAGGCCTCCATCGACGAGG
GCCTGctcctggtggcggcgggggctcGCGTCGTCCGCTTTGTCCCGCCC
TTGGTCgtgagcgagggggaagtggaggaggcggtcgccAGGTTCGGGAa
agccttggccaaggcgatggcggcgcggtga
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Synonyms
Publications