rna10098, rna10098 (mRNA) Nannochloropsis gaditana

Overview
Namerna10098
Unique Namerna10098
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1287
Alignment locationKK037262.1:41396..42111 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100950g2.3816.mrna
Orig protein idgnl|cribi|Naga_100950g2.3816
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:41396..42111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100950g2gene9801Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10098rna10098-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20607.1cds10067Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10098 ID=rna10098|Name=rna10098|organism=Nannochloropsis gaditana|type=mRNA|length=1287bp
TTGTCTAGGAAAAATAAAGATACCCCGTGCATTCCAGCTCCATTTCTGTC
CATCATAGCAATTACAAGGATTATCATGTGCTTTGGCTCGCAGGGCCCGC
AAGTCTCGCCTTTGAGTTCCTGTAGAAGCCGAGCTGATTTAGCATGGTTT
AACCTCCCCCCTTCGGAATTTTCTTTTCTCATTTCAGAAGTGCAACATGC
CGTTTCTCACAGAACAAAATGCGGCCCTCTCTTTTCGTGATGAGTTTTCG
GGCTTTTCGTCCGTCCAAAAAAGCCTTTTGGCTTGAATGGACATCGTATA
TTTGGTGTTTGGATCTTTTGGAAGATTCGGACAAGATGTCAGTCATAGTT
ATCAGAAGGCAGCGCTCGCCGTTCCATCCATATCCCAGGTTTCTTCTCCC
TAAATCCACAAGCAGTACACTCTGACAACACCAGGCGGATGGGGTACAGT
CTATCCCAATTCTAAAAATATAATTGGCTTGTGTAGTGCCGGGAGATCCC
CTTCAATGCTCCATCATCCCGCCGTCATGGCGCACCTTCTCAACCGGCAA
TCGCCCTCCCCTGACAGCAAATGGAAACTCCGTCTAACTTGACCATCTGT
GATGACGAATACTCATGCATCACAATCCAGTGCCTTGTTTTCTTGTCCTT
GGGATACAGATTTATTTTTGGGGGTTTGTCGAGGTTAAACGGGACCTCTC
TTTCCAAGAGCTCTCTCCTAGCTCGAGGAGGCGGGACTTTCCGTTCCTCC
CCATCCTCACGCCCATTTTCGGGCACGCTTGCGATGCCCCTGCGCATTGC
ATGCAACCATGCGCCCCGTGTTTCGATATGCTGGCGTATCTTTGTAATAG
ACGAGGAGACCGGACTTGTCTGACGAACCACCTACCTCCGGACTCTTGAC
TATCGCTCGACGCTCGATCTTGTGCTCCACCCCCAAACTTTTCTCTCGGT
TATGCCTTGGCCTTCATTCGGGGATTTTCGGGGGTTTGGACACCAGGATT
TCTCCCAACAGTACCCACACCCGCGTTGATTTCCTCCCCGCCACCCTGAT
CCCTCTCTCCGTCCCTCCCTCCCTCTCTCCCTCCTTCCCTCCTTCCCTCC
TTCCCTCAAAGGGAGTGTACGCGTGGCTTTGCTGGTTTTGGCACCATGAG
CGACATCCCGTACGAGAACCAATTCCAACACATCGAGGGTGGCGAGTACG
AGATCCGTGAGTCACTGTTTCTCGGGGCGGCAGGGGCCACGACGACGGGT
GCTTCTGGTTTGCTTCCTCTGTCCCTCCCTCCCTCCC
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protein sequence of rna10098

>rna10098-protein ID=rna10098-protein|Name=rna10098|organism=Nannochloropsis gaditana|type=polypeptide|length=150bp
MTFLVDPTRFLRHGNSSHASERPNMGRFLHRFSPPDRTNCKEREIIQAVY
LGQKLGKLHREDLCIRNLRARSQIVSRRLDRAQHARSAFDVVSQPRNAAI
GQSKKWHPNTWYRLMNIMKHVMDVVSIPLLLLSIDFLKKSAFLYANTKGH
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mRNA from alignment at KK037262.1:41396..42111+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10098 ID=rna10098|Name=rna10098|organism=Nannochloropsis gaditana|type=mRNA|length=716bp|location=Sequence derived from alignment at KK037262.1:41396..42111+ (Nannochloropsis gaditana)
aaatgcTTGCTCTATCATGCTACCCAAAAACTAAAAAATCGATCGTGAAG
GTATTACATTGGTGGATTACTTGAAATATTTATGCCTCCTGTTTATAATA
ATGACGTTTCTTGTAGATCCTACCAGATTTTTGCGCCATGGTAATTCCAG
TCATGCATCGGAACGTCCAAACATGGGACGTTTCCTACATCGCTTTTCCC
CACCGGATCGAACCAATTGTAAAGAGAGGGAAATCATCCAGGCTGTATAT
CTTGGACAAAAATTGGGAAAACTCCATCGAGAAGACTTGTGTATTCGGAA
TCTGCGCGCCCGCAGCCAGATAGTATCCCGACGGCTCGATCGTGCACAGC
ACGCCCGTAGTGCTTTTGACGTCGTATCACAGCCACGAAACGCTGCCATT
GGTCAATCGAAAAAGTGGCATCCGAACACATGGTATAGGTTGATGAACAT
AATGAAACATGTGATGGACGTTGTGTCGATTCCACTACTACTATTATCGA
TTgattttttgaaaaaaagtGCCTTCCTGTACGCTAACACTAAGGGCCAT
TAGTCTGGTACGTAGACAAGGCGCAGGTTTAcatcgaagaggaagcatcC
AAAGCCACTATAATTGCTTAATTACCAAAATAAAACATTCCATTACACGT
TTCCCCAAAAATTCTTACTATCAGTTTCTGAAAGGAATGACAGCGCAATC
GAACGTTTTCCCGGGG
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Coding sequence (CDS) from alignment at KK037262.1:41396..42111+

>rna10098 ID=rna10098|Name=rna10098|organism=Nannochloropsis gaditana|type=CDS|length=453bp|location=Sequence derived from alignment at KK037262.1:41396..42111+ (Nannochloropsis gaditana)
ATGACGTTTCTTGTAGATCCTACCAGATTTTTGCGCCATGGTAATTCCAG
TCATGCATCGGAACGTCCAAACATGGGACGTTTCCTACATCGCTTTTCCC
CACCGGATCGAACCAATTGTAAAGAGAGGGAAATCATCCAGGCTGTATAT
CTTGGACAAAAATTGGGAAAACTCCATCGAGAAGACTTGTGTATTCGGAA
TCTGCGCGCCCGCAGCCAGATAGTATCCCGACGGCTCGATCGTGCACAGC
ACGCCCGTAGTGCTTTTGACGTCGTATCACAGCCACGAAACGCTGCCATT
GGTCAATCGAAAAAGTGGCATCCGAACACATGGTATAGGTTGATGAACAT
AATGAAACATGTGATGGACGTTGTGTCGATTCCACTACTACTATTATCGA
TTgattttttgaaaaaaagtGCCTTCCTGTACGCTAACACTAAGGGCCAT
TAG
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Synonyms
Publications