rna10092, rna10092 (mRNA) Nannochloropsis gaditana

Overview
Namerna10092
Unique Namerna10092
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length567
Alignment locationKK037262.1:28515..29714 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101429g2.10413.mrna
Orig protein idgnl|cribi|Naga_101429g2.10413
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:28515..29714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101429g2gene9794Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20611.1cds10061Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10092rna10092-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10092 ID=rna10092|Name=rna10092|organism=Nannochloropsis gaditana|type=mRNA|length=567bp
CCTCCCTCCCTCCCTTCCTCTCCCCCTCCCTCCTTCCTCTCCGCCCTCCT
TGTCATGCTCCAGATCCCTCAGGCCAGCGTCCGCAAACCTTCCCTCCTCC
TCCTCCGCCTCCTCTACGAAGCTGCCCCCGACCCCGAGTTTAAAGCGAAT
TTGATTTCAGATTTCCATTTAATTCCCATGATGCAGCAGTTGGTGGCGGA
CGCCAGCCATGTGTTGGTCCGGGACTTGGCTGGGCAGTTGCTCGCTGATT
TTGAAAAAGCGTTACCTGCCCGCTGAGTTAAAAAAGCGTTACCGTACCCT
TCCGAGGGATGTTGAAAAAGCGGCTTTTGAGGGAGCAGAGAAGACGCAAG
GCAGGTTGAGATGAAAGACCTTTTTCAAAAATATTCAAACATGGATGTTT
GAATGTTTGAATTTCGTTAAACCGCCCCCTTTAGAACAGGAAGGGGCATG
TAGTGCATAGACCACTCCAAATAAAAATAAATCGGCCCGATCGAGTGTGT
GTGTGGACCAAATAGCCGCGAAGTAAATAGGGATTACAGACAGAACGAGG
AACGACCCTTCCCCTCA
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protein sequence of rna10092

>rna10092-protein ID=rna10092-protein|Name=rna10092|organism=Nannochloropsis gaditana|type=polypeptide|length=359bp
MTPSDVKQQVQCLLRTALHTTEESVSDEGPSFMVLGEHSSTPAAMHVSRP
GENREGPEASSVRAPLAFLHALRLEIQRIEAHVRRQILARNSQKAPREAS
PVSGVPRTSGSAQAGNDVRWDLFARPTQPLKVPSQGEESHTLLLLNTLQQ
SLEPFHTALRRALQRLYASHSRLLDALKLSQAQRRAMAAAERHSVPLLEA
LRVSHRLRSTTAAPRGWSEGVSLPYLPPSPYMPGNECLTASLLRRVQLPR
KRGGREVAEEEEGRREGGREGGKQAKMKREEVHEGGGGEGRGGGGGGGGG
KGEGGGGEGGGGGGGGGGGGGGGGGGGRGRAAPAQPKKQTFMDDDDEEEE
EEEEEEEED
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mRNA from alignment at KK037262.1:28515..29714-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10092 ID=rna10092|Name=rna10092|organism=Nannochloropsis gaditana|type=mRNA|length=1200bp|location=Sequence derived from alignment at KK037262.1:28515..29714- (Nannochloropsis gaditana)
CTACGTAGGTATATACATGTATAAATCGACAATGACACACGGTTGACGGT
CCTTTCGGCCGCAACTGCCGTTTACTCACCGTCCTTTTCGTCTTTTTTCC
CCTCCTTCTAGGGCGCGAGCATGACCCCATCAGACGTCAAGCAACAAGTT
CAGTGTTTGCTTCGCACTGCGCTTCACACAACGGAAGAAAGCGTTTCGGA
CGAAGGTCCTTCCTTCATGGTCCTGGGAGAGCATTCCTCGACGCCGGCTG
CGATGCATGTCTCACGTCCTGGGGAGAATAGGGAGGGCCCAGAGGCATCA
AGTGTTAGGGCTCCACTTGCTTTTCTGCATGCACTACGCCTGGAAATTCA
ACGCATCGAAGCGCACGTCCGGCGTCAAATCCTGGCAAGGAACAGCCAGA
AGGCGCCAAGAGAGGCCTCTCCCGTTTCCGGCGTTCCACGCACGTCGGGC
TCGGCCCAAGCGGGGAATGACGTCCGGTGGGATTTATTCGCTCGTCCGAC
GCAACCTTTGAAAGTACCTTCCCAAGGCGAAGAAAGCCATACACTCCTCC
TCCTCAACACCCTTCAACAGAGCCTAGAGCCCTTCCACACCGCCCTCCGC
CGGGCTCTCCAACGGCTTTATGCCTCCCACTCCCGCTTACTCGACGCGTT
GAAGCTCAGCCAGGCGCAGCGCCGGGCGATGGCGGCGGCCGAGAGACATT
CGGTGCCGCTTCTAGAAGCCTTGCGAGTGAGTCATCGGCTTCGAAGCACG
ACGGCGGCCCCGCGGGGATGGAGCGAGGGAGTGTCTTTGCCCTACCTCCC
TCCCTCTCCGTACATGCCCGGGAACGAATGTCTGACGGCGTCTTTGTTAA
GGAGAGTGCAACTGCCTCGGAAACGGGGAGGGAGGGAGGTGGCCGAGGAG
GAGGAGGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAAGCAGGCGAAGAT
GAAGAGGGAGGAGGTACATGAGGGAGGAGGAGGGGAAGGAAGAGGGGGAG
GAGGAGGAGGAGGGGGAGGGAAAGGAGAAGGAGGAGGAGGAGAAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGAGGAAGAGCAGCGCCGGCGCAACCCAAAAAGCAGACGTTCATGGATG
ATGATGATGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATTAG
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Coding sequence (CDS) from alignment at KK037262.1:28515..29714-

>rna10092 ID=rna10092|Name=rna10092|organism=Nannochloropsis gaditana|type=CDS|length=1080bp|location=Sequence derived from alignment at KK037262.1:28515..29714- (Nannochloropsis gaditana)
ATGACCCCATCAGACGTCAAGCAACAAGTTCAGTGTTTGCTTCGCACTGC
GCTTCACACAACGGAAGAAAGCGTTTCGGACGAAGGTCCTTCCTTCATGG
TCCTGGGAGAGCATTCCTCGACGCCGGCTGCGATGCATGTCTCACGTCCT
GGGGAGAATAGGGAGGGCCCAGAGGCATCAAGTGTTAGGGCTCCACTTGC
TTTTCTGCATGCACTACGCCTGGAAATTCAACGCATCGAAGCGCACGTCC
GGCGTCAAATCCTGGCAAGGAACAGCCAGAAGGCGCCAAGAGAGGCCTCT
CCCGTTTCCGGCGTTCCACGCACGTCGGGCTCGGCCCAAGCGGGGAATGA
CGTCCGGTGGGATTTATTCGCTCGTCCGACGCAACCTTTGAAAGTACCTT
CCCAAGGCGAAGAAAGCCATACACTCCTCCTCCTCAACACCCTTCAACAG
AGCCTAGAGCCCTTCCACACCGCCCTCCGCCGGGCTCTCCAACGGCTTTA
TGCCTCCCACTCCCGCTTACTCGACGCGTTGAAGCTCAGCCAGGCGCAGC
GCCGGGCGATGGCGGCGGCCGAGAGACATTCGGTGCCGCTTCTAGAAGCC
TTGCGAGTGAGTCATCGGCTTCGAAGCACGACGGCGGCCCCGCGGGGATG
GAGCGAGGGAGTGTCTTTGCCCTACCTCCCTCCCTCTCCGTACATGCCCG
GGAACGAATGTCTGACGGCGTCTTTGTTAAGGAGAGTGCAACTGCCTCGG
AAACGGGGAGGGAGGGAGGTGGCCGAGGAGGAGGAGGGGAGGAGGGAGGG
AGGGAGGGAGGGAGGGAAGCAGGCGAAGATGAAGAGGGAGGAGGTACATG
AGGGAGGAGGAGGGGAAGGAAGAGGGGGAGGAGGAGGAGGAGGGGGAGGG
AAAGGAGAAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGCAGCGCCGG
CGCAACCCAAAAAGCAGACGTTCATGGATGATGATGATGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAAGATTAG
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Synonyms
Publications