rna10076, rna10076 (mRNA) Nannochloropsis gaditana

Overview
Namerna10076
Unique Namerna10076
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1419
Alignment locationKK037261.1:85890..87133 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100692g1.783.mrna
Orig protein idgnl|cribi|Naga_100692g1.783
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:85890..87133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100692g1gene9778Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10076rna10076-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20628.1cds10045Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10076 ID=rna10076|Name=rna10076|organism=Nannochloropsis gaditana|type=mRNA|length=1419bp
GAAGGCGTGTGGCTATAAATGAATGCTGCTGGGATCGAGTTATTCCCACG
CGTGCTATCACCTCCCCTGCCACATGAGCAGCAACAGCAGCGATGCGAAG
GAGACGAGAAGTTCTCAGATCGGGACGCTACGCAACTGAATAGGATGGTG
GACGTATGCATGTGCTTTCACCACAATGACCACTGTCCGCTCTATTTTTG
CATTCATGCTGGTGTCGAAGCCCGTGGTTGGAATTATTGCAGCATGCTGG
CTGCTGGCTTGCTTCAATCGCACATGTAGCATGTCCCACGTGCGGCCGCT
TCATCATCAAGTGCTCTTTCGACTATTTGTAGCGCCCGTGTGCTGTGCTG
AGCTGAATCTAAGTAACTACTCACCCTTTTCTCTTCCTCTAACACGAAAT
CAACCCCTTTTCGGTCAGACAGGCGCCCGACACGACCACGATCGCAGGAC
ATCTGGCGGGTGCAAGAAGGGGCTGGAACGACATGTGCTAAGCCCTAAAA
GAGCTTTTTTCAGACAGTTTTCATTGAGACAATACATCTCCTATCTTTGC
CTCGGATTCTTAAGCTCCATGCCGCTCCTCTTCCCGCCTGAAAGGCCCAG
GCCCCCGCCCTCGCCTTCACCCTCTTTGCCATCCCACGTCCTCAGGAGAA
ACCGCCAGCGCCTAAGAGACCGCACAGGAAGGGCCAGCACCTTCGTGCTC
CTCCTCCTCCTTCTCTCCGCATTCTGCATCGCCGCCTTTAGCCCCCAAGT
CACCTCTTTTCCTCCCCGTGCCCCCTCCTCCTCTGCCCTTTCCCCCCAGC
GCCTGACGCCTCCACCGTCCGCCCGCCGATTTCCCTTCCTGCTTCCCCCC
GCCCTTCCCTCCCTCTTTCCCCTCTTCTCCGCCCTGCCCGACACTGCAGC
TGCAAACCGCGCTCCTCTCAAACAACAACAACGACGAGCGGCGGCGGCGG
CGGCGGGAGAGGAGGCCGCGGCGGCGGCGGCGGCGGGAGAGGAGGCCGCG
GCCGCCGCGAGGGCAGTGGCCAAGACTGCGGAAGACCCCTGGGACGGCCA
CAAAAACGGTTTCGACTGGCAGTTGGAACGCGCCCGTCGGACCCTGGAGG
GGGGGCCGGCCCATAGCCCTTTCCGCATGGACTATTGGCGCCCGGCGCCT
TCGGAGGACGGCAGGAGGCGGCGGCGGCGGGGGGAGCGGCGTCGGCTGGT
TCGACTCCTGCAAGATCTTCCTCAGCAATGCCTACCAGCTCGTGACAGGG
AGCAAGGGCCTGGACGGGGCGCCCGTCGCGGATGTGGGGAAGTATAACGG
CTCGTGGACCAACTTCCTGGCCAAGGTCATGAGCGGGCAGTTGGAGGAGC
TAGCGGGGGCCCCCTCTTCCTCCTCCTCGCCAAATACTACAAGAAGCACG
GGCCTGTACGTCCTCCTTC
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protein sequence of rna10076

>rna10076-protein ID=rna10076-protein|Name=rna10076|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MLSFVPPPSLPFSLPPSLRPRRPSHDGLEAATRSPLPRVYLPPPRPCHPT
LARKRDGGIHGGARAGGRGESVEEAVGGGVSGSPLRSRDVGEGGKEIVGS
GEAMWEAAAWVEKDVCH
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mRNA from alignment at KK037261.1:85890..87133+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10076 ID=rna10076|Name=rna10076|organism=Nannochloropsis gaditana|type=mRNA|length=1244bp|location=Sequence derived from alignment at KK037261.1:85890..87133+ (Nannochloropsis gaditana)
CCAGGCCATGCTTTTGCGGCGCTTCGACTTCACCCTCCACGggaccgtgg
aggaggtcggcaTGCGGACTGGCGCCACCATACATACAGAaggtttgggg
gggggggagggagggagggagggaaggagggagggaaggagaatggaagg
agggagtgattACAGCTGGTCTAAAGTTGAGGCTTGTCGAAAGGATGTGA
TGATTGAGATTGGATATATGAGATAGagagtgggagaggacagcAGTATT
CGACGGGGAAGGGCTGTGCGGACGCTCCTtgcatacccggaggtgTCCAT
CGGTCTCGGTGACCCCCGTTGAGCGGAAGAAGTGCTTTCCGCCACACCCT
CACGCGCACCATGTTAtccttcgtccctcctccctccctccctttctccc
tccctccctccctccgtcccaggCGGCCTTCGCATGACGGTCTCGAGGCG
GCAACCCGATCGCCACTCCCACGAgtctacctccctccaccccgtccttg
CCACCCGACTCTCGCCAGGAAGCGCGACGGCGGCATCCACGGTGGGGCTA
GggctggaggcaggggagaaaGTGTTGAGGAAGCAGTCGGAGGGGGGGTG
TCCGGTAGCCCATTGAGGAGTAGGGatgtgggggaaggaggcaaggagat
tGTTGGGAGCGGAGAGGCCATGTGGGAGGCAGCTGCTTGGGTAGAGAAGG
ATGTCTGTCATTGACTGTACAGTACACATAAGATAAGGAAAGATTAGAGC
GGGCAGAAAGGGAGCCTAGGAGGGCAAACTGGAGACAAGAAGACGACGAA
AATTGACAAACTGATGTGCTTAGATTTTGATAGGGAATGGCAGCGaccga
ggaaggaaagggagggcaggaggtgggaggcgggggggattAGGATGGAG
GACTGTCTTCTGTCGCCTTGGGTAGAGCGCGCGTCGGGGCCGTTGCGCCT
CCTCAGGGCACGTGAAGGATGATGCAATGAGGACCACCTTCATGTTCGTG
TCGGAGGTTGTCACTTGCgggaccttcccctccgcagTGGAAAGCAGGCC
AAGTGCGACgagggggaatggggagATGGTGATCCGGGGGGGCGCAGGGA
CGAGGCGCCAgtgaggggaaaagggcgcgAGGATGCGTGCGGAAGTATTG
ATGCTTAGCTTTGCTTTGTCCGAGTATTTTACATGCAataaaggaaaaaa
gaaggtACAGACAAAGTGAATTGAAGGCGATGATCGAAAGAGCG
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Coding sequence (CDS) from alignment at KK037261.1:85890..87133+

>rna10076 ID=rna10076|Name=rna10076|organism=Nannochloropsis gaditana|type=CDS|length=354bp|location=Sequence derived from alignment at KK037261.1:85890..87133+ (Nannochloropsis gaditana)
ATGTTAtccttcgtccctcctccctccctccctttctccctccctccctc
cctccgtcccaggCGGCCTTCGCATGACGGTCTCGAGGCGGCAACCCGAT
CGCCACTCCCACGAgtctacctccctccaccccgtccttgCCACCCGACT
CTCGCCAGGAAGCGCGACGGCGGCATCCACGGTGGGGCTAGggctggagg
caggggagaaaGTGTTGAGGAAGCAGTCGGAGGGGGGGTGTCCGGTAGCC
CATTGAGGAGTAGGGatgtgggggaaggaggcaaggagattGTTGGGAGC
GGAGAGGCCATGTGGGAGGCAGCTGCTTGGGTAGAGAAGGATGTCTGTCA
TTGA
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Synonyms
Publications