rna10070, rna10070 (mRNA) Nannochloropsis gaditana

Overview
Namerna10070
Unique Namerna10070
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length505
Alignment locationKK037261.1:61353..62770 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101230g2.7581.mrna
Orig protein idgnl|cribi|Naga_101230g2.7581
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:61353..62770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101230g2gene9771Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10070rna10070-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20634.1cds10039Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10070 ID=rna10070|Name=rna10070|organism=Nannochloropsis gaditana|type=mRNA|length=505bp
ACATGCGACTCATGAATTTTCTCACCAGTGCAATCAATACAATATCTTCC
AGGCAGTCTTCAGAGTGGGGACGGATTGCTTCACCGGGTGGAAAGGGACT
CTCGCATTTTTTCTTCCAACATTATTCGGGTGCAAGCAGAGTCACCTACT
TCACATTGGCACCATGCAGACTCTTCCCCAGGCTCCTCCGCTACAGACAA
CACCACCTGCTGTCCAAGACCTAGACACACGCCCCGCTATTCTGCTGTAC
TATGCCTACCGCCCTCTCTCTCATCCGTCCTCGCTCTGTCCTTCAACCCC
GCCATCGTCCCCTGAGGGCCCTTCCCCCTTGGCACGGAAAGAGGATAATG
ACCATGTGGACAAGCGGGAGCACTTGGCTTGTTGGTACGAAAAAACATGC
GCAGCCTTGGGTCTTAAGGGCCGGGTGCGGGTAGCGTGGGACGGAGTGAA
CGCCACCTTAGGTGAGCTACGAGTGGGGTGTCTCCGTACGCCCGCCTCAC
TATAA
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protein sequence of rna10070

>rna10070-protein ID=rna10070-protein|Name=rna10070|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MGKNEAKRLRHVLLKRCTAGGLCVLEAFSVIGRLEFGVVANGGRAVERGC
SLPLDFAGSLLRKLSSFAKRAKSMKKEERRSIRDGKRGEKSDTKKKSAIY
KVDDLMAGWAGEQGDECGPTSGPRTCYFLGFLFPSCPVRYWKIGYERCGR
SGGCHG
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mRNA from alignment at KK037261.1:61353..62770+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10070 ID=rna10070|Name=rna10070|organism=Nannochloropsis gaditana|type=mRNA|length=1418bp|location=Sequence derived from alignment at KK037261.1:61353..62770+ (Nannochloropsis gaditana)
TGCCTACGCTTCCTTCCGTGCCTTGGAAGCTGGCGACcaagcggagggga
agatttggtgaggggggaggaaaggagggaaggaagggtcaGCATGTCGT
CTGCTTtgtcggtggagggagtCAATGCGTGAACAATGGTGGCCGCGATA
TGAGTGAGGATACGACTgatcctcccttttctccttcttcaggCTTGGGT
ATTGGGTCACCTTCGGCGCCATCAACCTCCTTGACTTCTTTGCCGACTTC
ATCACCTACTGGCTGCCTTTCTATTACCTGCTCAAGTAGGAttaaaggaa
gagggagggaggggctaatgagagggaggatggtcATTTGTGGGGAGAGT
ATTGGAAGTAGAGAGGGACCAGGCCGTAGCACAAAAGGACTGAGCCCACG
CGCCCCCttggcccctcttccttcctgccaGGGACTCTCCTTGGCTTACC
GACACAGAAtcgtctccatcctcctcgtcacaCCGTACACttaacccccc
cccccccaaaccccccctttcctcccgtaGGCTTGCCCTGGTAGTCTACC
TGACGCATCCTCACTTCCGTGGGGTCGTGCACCTGAAAAAGGTGGTCAGC
AAGATGGGGCGGGCGCTGACGAGCAAATTTGAGTAAGAgacagcggggga
gggagaggagggcacaTGTGTATTTGAAGTTCGAAAGTGGCAGGATGGGA
AAAAACGAAGCGAAAAGACTGCGTCATGTCCTACTAAAGAGGTGTACAGC
GGGAGGCCTTTGTGTTTTGGAAGCGTTCTCGGTCATTGGAAGGCTAGAAT
TCGGGGTGGTGGcaaatggaggaagggcggttGAGCGCGGCTGTTCCTTG
CCTCTTGATTTTGCAGGTTCCTTGTTGAGAAAGTTGTCAAGTTTCGCGAA
GCGGGCGAAGagcatgaagaaggaggagagaaggagcatcagggatggaa
aaagaggggaaaaatcggacacgaaaaagaaaagcgcTATTTATAAAGTT
GATGACCTGATGGCTGGCTGGGCGGGCGAGCAAGGAGATGAGTGTGGCCC
CACTTCCGGACCCAGGACCTGCTATTTTTTGGgatttcttttcccatcgT
GTCCCGTGCGGTACTGGAAAATTGGATACGAAAGGTGTGGACGCTCTGGA
GGGTGTCATGGGTAGTGTGGGAGACACTCGTTTCAAAGTTGAATCTGCGC
GCTCTGCCCTCTGTTTGCTCGTTGCAAAGAGGGAACGGGGATCGAGTTAC
AGGCTGTGTGGCAGCGTCACATGGCCTCACTTCCCTCTTGTGCCAGTCAG
TGCAACGCATTTTTCAAGACAATTGCTCgcgcacctcctctcccttgtgt
GTTTTGCTTTCTGCCGTTAGTCAATTTCATATTTCAAATGCCACTGTATA
ATACATGCACACTTTCCA
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Coding sequence (CDS) from alignment at KK037261.1:61353..62770+

>rna10070 ID=rna10070|Name=rna10070|organism=Nannochloropsis gaditana|type=CDS|length=471bp|location=Sequence derived from alignment at KK037261.1:61353..62770+ (Nannochloropsis gaditana)
ATGGGAAAAAACGAAGCGAAAAGACTGCGTCATGTCCTACTAAAGAGGTG
TACAGCGGGAGGCCTTTGTGTTTTGGAAGCGTTCTCGGTCATTGGAAGGC
TAGAATTCGGGGTGGTGGcaaatggaggaagggcggttGAGCGCGGCTGT
TCCTTGCCTCTTGATTTTGCAGGTTCCTTGTTGAGAAAGTTGTCAAGTTT
CGCGAAGCGGGCGAAGagcatgaagaaggaggagagaaggagcatcaggg
atggaaaaagaggggaaaaatcggacacgaaaaagaaaagcgcTATTTAT
AAAGTTGATGACCTGATGGCTGGCTGGGCGGGCGAGCAAGGAGATGAGTG
TGGCCCCACTTCCGGACCCAGGACCTGCTATTTTTTGGgatttcttttcc
catcgTGTCCCGTGCGGTACTGGAAAATTGGATACGAAAGGTGTGGACGC
TCTGGAGGGTGTCATGGGTAG
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Synonyms
Publications