rna10054, rna10054 (mRNA) Nannochloropsis gaditana

Overview
Namerna10054
Unique Namerna10054
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1087
Alignment locationKK037261.1:4328..5695 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101774g1.1327.mrna
Orig protein idgnl|cribi|Naga_101774g1.1327
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:4328..5695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101774g1gene9755Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20650.1cds10023Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10054rna10054-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10054 ID=rna10054|Name=rna10054|organism=Nannochloropsis gaditana|type=mRNA|length=1087bp
ATAATGGGAATGTCGAGCTCCACAGCACTGACACTCGCTAAGGATCTACA
GCGATCGACGTGTACTACGTGAAGCAATTTGGTGTCCAAACACCCGACGC
ACAAGTCTTTGGAAAGCGTGTCGAAGGACATCAGGCTGTGCGTTTGAGTC
CTTGGAAGCAGGTGGTAGTAAGCAGGCGCGCTGGCGCGCTTCAATCCGCC
TTGATGGTCCGCTATGTTATACACACGCTTTCCTCCCCCTTCAGTCCAAT
AAATGATCCTTAAATATTTGTCTGTAAATTGGGGACGGGGGGGGTCATCG
GCTCAGGGAGACTGCAAAGTGGGAATGACATGAAGTCAGAAACACCAGAG
TTTCCTGAAGTCTAAGGCGTGAAGGCCGCGCATCTCGGAATGTCCTTGAT
GCTCCATCCCTGGCGTCGATGGAGGCGACTTGGGGACCGCTGCCTCTACC
GCGGTTTGTCTTCTTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCTTCCCCTTCCTCCCCCTCCTCCCCTTCCTCCTCCTCCTCCCCCCCACC
TTTGTTCTCTACTCCGTTCAACGCCTCCCCTACCCTGTCCGGCACTCCAT
CCGCTCCTTCATCACAAATTCATGCTTCTTTGTTGGGACCGGGGAAGGCG
GTGGTATCCTTTGACACCATGAAAATGTGCGACTCCTTGCAGGAAGCAGG
CTTCTCCAAAGCGCAGGCTCAGACCGTCTTGAGAGTGCTGGTCGCGGGGA
TGGAGGAGTGCACGTTGAGAAGCACGGCGATGATCGCGACGCGGCGGGAC
CTGTTGGACCTGAAATCAGACTTGAGCGAACGTCTCTTCGGCAGCACCAT
GCGTTTCGACGTGGCGCAACGCCACAACAAGGAAGTGATCGAGAGGGACC
TACAGTCCTTGCGATCGGACGTCAACGCCTCCATTCACGCGGAGATCCAA
AAAATCGAGCGGGAAATGTCGAATTTGGAAAAAGTGCTGACCGACAGGCA
CTTGACCCGGCGGGAGCTCATGGAGCAGCGCGTTTCCGTCTTACAGGTAG
CCTGGTAACGGTCGAAGAGACGCAGGGAAGGGGGGGC
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protein sequence of rna10054

>rna10054-protein ID=rna10054-protein|Name=rna10054|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MDVEGREVSSVRRGASKGWVWRWPQSVFRTEERGGSAVGSGRARECPGEG
KRKSRAEGGMSDDRRKGAYRRGEGREGGREGGREGGRGVAILESGACRRE
PRSKTMEGRKGGGEDGYRKEVKEARGTIPVSGMEMRSRMSRALPFY
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mRNA from alignment at KK037261.1:4328..5695-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10054 ID=rna10054|Name=rna10054|organism=Nannochloropsis gaditana|type=mRNA|length=1368bp|location=Sequence derived from alignment at KK037261.1:4328..5695- (Nannochloropsis gaditana)
CCTTGGCGCGCTTTCCTCTTGCTGTAGGCCGCCGGTGATGACGTCAGTAA
AGGAGTCTCCGGCACCATGGATAAGGAGGACGAGCAGGAGGGCGGGAAGG
AGGGCGGGAAGGAGGGCAGGAAGGAGGGCGGGATGGGGAAAAAGATTGCG
ATCGAGATCGCGAGCCAATTGGAGGAAATCATGACGGGGGAAGGAAGTGG
AGAAGAGGGCAGTCGGGAGGGACCGACCGAGGCGGGGAAGGAGGCCGGGA
AGGAGGGCGAGGGGGAGGGCGGGCTGACGGGGCCGGCGGAGTGAGAGGGA
GGAAGGGGGGCAGGGAGGGAGGGAGGGAGCGAGGTAGGGAGGGAGGGAGG
TAGGTAGGTGTATGCATGTATGTGTAGGGATGTAATGGGCTCTGCGAAGA
CACGCAGAGAATCTTATTTTGCGTGTACAAGCCGTGGGTGATGTTGGATA
TAAATCTGCTTTTTCCGAGCGTTGCGTTAGGGCTACGTGTGCGTCGGGAG
AGGGCCTCCTCGAGGCGCACAATGAGGAATAGGAGGGGAGGGCGGGGGGG
AGGAAGCACAGGAGGCGCAGGGAGGTGTCAAGTGGATAGGACAGTTCGGA
AGCCTGTGGTGGGATGTGGTTCGAGGGAGGGAGCATCCTTTAAAAGGAGA
AGGAAGGATGAAGAAAAAGGGAATGGGCACGGTCTCAACCAAGACGTGAC
GGGACGGGCGAACCGGAGCGACAACTAGCCTTTTCTCCCTCTGCCATCGT
CGAGTCGGTGCGGTTTAGGATATTTGATGGATGTGGAAGGACGCGAGGTG
AGCTCCGTCCGGCGTGGCGCGTCCAAGGGGTGGGTGTGGAGATGGCCGCA
ATCAGTCTTTAGGACCGAGGAGAGGGGTGGCAGCGCCGTGGGCTCTGGGC
GAGCGCGGGAGTGTCCAGGCGAGGGAAAGAGGAAGAGCAGGGCGGAAGGC
GGGATGTCTGACGACCGCAGAAAGGGAGCTTATCGACGGGGGGAAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGTGGCGATCC
TTGAAAGCGGTGCGTGTCGGCGTGAACCAAGGAGCAAGACGATGGAAGGG
AGGAAGGGAGGGGGGGAGGACGGGTATCGTAAAGAGGTAAAAGAGGCAAG
GGGAACCATACCAGTCTCAGGAATGGAGATGAGATCGCGGATGTCTCGGG
CGCTTCCGTTTTATTGAAGTCGGGACATGCCCTTCAACCAGCGCGTCTAA
CTTAAACCAAGGAAGGGATAGGGGCAAGGGAAAAACTGGAGAGAGGCAGG
GGATGGGGTGAAAGGGGGGGCAGAAACAAAAGAAGAAACTTCCCCACACT
CGACAGGCGGGAAAAAAA
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Coding sequence (CDS) from alignment at KK037261.1:4328..5695-

>rna10054 ID=rna10054|Name=rna10054|organism=Nannochloropsis gaditana|type=CDS|length=441bp|location=Sequence derived from alignment at KK037261.1:4328..5695- (Nannochloropsis gaditana)
ATGGATGTGGAAGGACGCGAGGTGAGCTCCGTCCGGCGTGGCGCGTCCAA
GGGGTGGGTGTGGAGATGGCCGCAATCAGTCTTTAGGACCGAGGAGAGGG
GTGGCAGCGCCGTGGGCTCTGGGCGAGCGCGGGAGTGTCCAGGCGAGGGA
AAGAGGAAGAGCAGGGCGGAAGGCGGGATGTCTGACGACCGCAGAAAGGG
AGCTTATCGACGGGGGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGGGGTGGCGATCCTTGAAAGCGGTGCGTGTCGGCGTGAA
CCAAGGAGCAAGACGATGGAAGGGAGGAAGGGAGGGGGGGAGGACGGGTA
TCGTAAAGAGGTAAAAGAGGCAAGGGGAACCATACCAGTCTCAGGAATGG
AGATGAGATCGCGGATGTCTCGGGCGCTTCCGTTTTATTGA
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Synonyms
Publications