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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100112g16.5443.mrna |
| Orig protein id | gnl|cribi|Naga_100112g16.5443 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:941870..944038 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1005 ID=rna1005|Name=rna1005|organism=Nannochloropsis gaditana|type=mRNA|length=4945bp
CAAATTAATGCCCGAGGCCCTTAGCCTTACCCCCCGCTCCGGCCACTTGC
CAGGTGTGTGCTTTCATACGCCTTTTACGTCATTGCTTAAGTAAGTGCGT
CTCCTATCATTGCGCCCTGTCTAGACAGCAGGTCTCTTCCATGCAACAAA
TCCCCTCGCTTGCCGTCGCTCTTCTCCTTTTCGTGTATGTAGCGACAATT
ACTGAAGCATGGTTACCACCTGAGCGATGCCGGGGGGGGGAATTATGGCA
AGACTTGATTGCACGACACCCATACCTGGCGGAGAGTCCCGGTCTCCCGC
AAACTTGGGATGCGCCCGTGGATCATTTCGACCCTAATAACACCGGCACG
TTCAAGCAGCGATATTTCCTCGATGCACAATTTTTCAAGGCGCCGGAAAA
CAACGGTACGGGCTTGGTTTTCCTTATGATCGGAGGGGAAGGCACTCTGA
CGGATCCGCCCTCGGGATTCGTCAAGGAGCTGGGCAAGCAGTACGCTGCC
CTCCTTGTCTCGCTCGAACATCGTTTCTATGGAGCAAGCCTCCCGAACGA
GGACATGAGCACGTCGTCATACGCGCGGCTCCTGACCATTGACCAGGCGT
TGGCGGACTTGGCAGCGTTCAGTGACTTCTTGCAGGCCGAACACTTTCCT
GAGACACCGCTACGCTTCTTTACCATAGGAGGCTCCTATCCTGGGGCCCT
GGCTGCCTTCTACCGCATCGCCTATCCAGGGAAGACTGTGGGCTCCCTCT
CCTCCTCGGGGGTCGTGAATGCCATTCTGAACTTTCCAGATTTCGACAGG
GTGGTTGCTCAGGCCATCGGTGGGCATTGCGCCGACCGGCTCCGGAATGT
GACGCGAGCATTTGAAGACGCGCTGCTGGTCCCAGCGGCAGCCTGTGCGG
CCAAGGGGCTTTTCGGATGCGATTGCGAGATGTGGGATGCGGATTTTTTC
TACATGCTGGCAGATGCTGCAGCCATGGTTGACCAGTACGGACGAAAAGC
AGAGCTGTGCTCGTTTCTCCTCGAAGGCCTCGGTACCGCCCCTACTGCCC
TCGAAATGCTTCGGGGCTTCGCCGATTTCACTCGAAGCTATTACGGCCCT
CAGTTCGGCTCCTCGTGTTTCTATGACTCCCGGTGTGCGGCCGATTTGAA
GAAAGCAACCCTGAATGAGCGCTCGTGGCGCTGGCAAAAGTGCTCGGAGC
TTGCTTATTTTCAAGTGGCCCCGACAGAGCGCGATGCAGAGGGAGGAAGC
GTCGCCTTGCGTTCAGGGCAAGTGTCGTTAGAGTACCACATTGAGCAGTG
TCAGCGGATATTTGGCGACTCCGTGGGTATGCCAGCTGTAAAGAGCGTCA
ATGATCGGTTCGGGGGGGCGCAGCCGACGGCCACACGTGTGTTTTACAGC
GACTTCTCTGACGACCCGTGGCGAGCGGCATCGGTTCAGAGCGAAGAGGG
AGGGCCCGAGGTGGAGCAACCCTTTGAGTTGGCGGTTTATGACGGGGCAG
GACACTGTAGTGATTTGCATGAGCCGACGGCGGGGGACCATCCGAATTTG
GTCAAGTTGCGCGGAAGATTTGAGGCATATTTGACACAGTGGTTGATAGA
GGAAACGGAGGAGGTAATCTAGAACTATCTATCTATCTAGAACAAAGTTG
TTTGAAGGGCAGAATGATATAGCGCGGTGGGCTTTGAGGTCTTTCCCGGA
GACAGGTGCTCTGGTCATATCTGGGAGGGCGCTAACGGCCCGCATGCCTC
CAGGCGCACATCTTCAGGCAAGGACATGCTATCAGGCAGCCTGCAGGAAT
CACATAACGACACAAAATTTGTCTATAAATAAAGGTCTTGACTTTCATGG
ATCTCCCATGTCTCAGACCTCTTCCTTCACACTACCACGCTCACCCCCCA
GTAATAGCGGCGGCCGCGTCATCAGGTATGCCCCCAGTCCCAGGAAAGGT
ATCGCCTTAAACAAGCTCAAGCTGATTTTTCCGACCTCGCCCCCTCGTCT
TTCAATGTCGTCGTCCAAAAGCCAGCCTTGAAAAACCCAGAAATAGAGCA
AATCTACCGCAAAGCTGAAGGTCAACCTGTCCGTAGTGAGTATTTGGACA
AAACTTCTCCATCGTTCGCTCAATTCCACTCCGTACACCTCTCCGCGTGC
CAAACCTGCCCACGCCAAAGAAAGAAGTCCCACTCCGATAAAGACTAATG
GTGGGATCTTGGACTCGCCCAAGGCCTCGGCTTTCGTCAGCGTATACCCC
TCCCCTGCCGGTTCGTCTGCTGGCTTCCAGACATTTTTACGCAGAACCAA
ATACGGTAAATAGACCGCGTTCGTCAAAAGCTGCATTCCCAAAACGTAGG
GCAGGAAGGCATTCTTCGCCCCCCCTCTCCCCTCTCCCGTTTTCCTTGCC
TGGGTGCTCTCGCCGGCCACCTTCCCATCGACCATAAAACCACTGAAAAG
CGCGGCCCATGCCAGCAACAAATTGAAAAGCCCTTCCAAGCAGGGATGTA
GAACAGGTGAGGACTGGGGTGCCAAGGAGGGCATGACAAGCCAGAAATTC
AAGGACAAGTCTCGCACCTCCGCCCATGTGGCAGGATCCAAGCTCAAGGC
GTTGGGTCCCGGGGCCACGGTGCTGAGGAAAACGAACCAGCAATAGAAGA
TGAATGCAGCTAAAGGTACCGCCTTGCGAGGCTCGTCGAGGAGGCGCCCG
ATAAGGGAGAGGACCGCCAGACTGGCGCTTCCGCTCTTAACCGTGGGCTC
GGGGACGTCGAAACCGGAGCATAGCTTCCCCGACACCCGATCCAGCTTGT
AGATGGAGGACCCTCGCGTAAAAGGGAGCTGCTTACCCTCGGACTCGACG
TGCCACTGCACGCCAACCACGTCGTCGCCGTCACTCACCTCGTCTAAGAC
GAAGGCAAACGAGTCGGGCAAAGCGTCAGCCACGCGAAACAAGTGGGCCT
TCAAGGCCTCCTTCCCCCGGAAGGCGCCGGGATACAACGTATCTTCGTAC
GAGCAGTCTTCCGTAAAAAGGTCGACAGCTTCACTCATGCGACGCTGATT
CCAAAACTTGAAATAGGACCGAACTTGCCTCACACCTCTTCCTTCCCTTC
TCCCCTTGCCAAGGGATCTGTCGTTCCCGCCCTGGGAAGGCTTAGATTTA
AACAGGGAGGTTAAGATCGAAGTCGACGATTCATAAGGGGAATTACTATT
TTTCATTCTTGTCTTCTCAGTGGATTTACAAGTGTATCGCACGTTTACTG
GGGCATTGAGACCGAGCCGAGCGCGGATCTGTCGAGAGAGCAATGCTGCT
CGGGGTTGAGATACTTGAAACGCGAAGGGAGAGACGACTCTGTTCCGATG
TAAGGCAACAAACCCTTCGCTACTAGAGCAATATAATTGTGAAACAGCAC
GAGCTGTCGTGAAGCTCGTCCACAGAAAATGAATCAGAAAATTCAGGGAC
AGGACAACGGAGGAGGTTGTGAAGGAACTCGGTCGACACCTAGAACCTGA
CATTTTGTCGTGACGATGCGATAAATCCGTCTTGCTCCGCAAAATATTGG
AGGCGACTAATCTGTGGTACGTCCACGGCCTTCAGGCATTGAAATCTGTG
CAATTTGTGGGGTGCTTTTGCTTAGTGTCGTAAGCTTTATATTCGCGCAT
GCGTGGCAGATCTTAACGTCTGGGTGAGCGAGAACATCGCACGGCCCTGG
AACAAAAATAAGTGCTCCTGAATCAGATGCCTGTGAGAAAAGCCACCCAG
AGGTAAGGTGGTGTCCATCGATTAAATATGCACGTTTTCCAGCCGATTTA
GGCTTTTTCCATCGATGGTGGCCACTACAATGACTCACTCGTAGAGTCGT
GCTCAGTCCTACACAAACCCCCCAGGGAGCGCCAATTGAAATCCAATATG
AGGCGTCCAAGCATCGCAATCCTCGCCATAATTTCTTTGTATTGTTTGGA
TGGTGTCAACTCCTTTTTCCTGCCGCGTACCTCGCTTCCCACGCCTGCCT
CTAGCTCCCTTGGACGTGGCCGTAGTACACGAGCTCTGCAGATGAATGGA
GTCACCGACGCCATTCAAGCCTACGTTGGAATTTGGAGCCCCACTATTCG
CACGATCGCAGCGGAGAACGACATCCCTACGGCGCTGATTAAATGGTTTC
ATGTAAGTTCACACGGATCTATGGGTCGTTTACGGATGATGATGTACCCA
GTCATGATCCCACTATGAATACCTGAAGCTGTCTGACTTTTTGCTGATGT
GACACCCCTTTATCTCCCAAAACATGCCACGTTCTTTTACGATACCCGGA
CATCCAGGGTGCCAACATGGGCATCGTCCTGACGACCATGGCCACATTCG
GAGCTTACCTCGGCTGGAAAATCCGTAGCGGCGATGGAGATGTAGAATTC
ACAGGCAAAACTGCCCGTGAACTTCATCCTACCCTGATGGGCTTGGCTTT
CCTCTTTTTTTTCCTGGGTGGGCAGGGTGGTCTTGTTTTGCTGGACGTGC
AAAACCACCCCATTTTGAACAGCACACACGCTGTGACGGGTTTGATCGGC
ATCGCACTTCTTGCGATGCAAGCACTTCTGCCCAAGCTTTTTGATGGCGA
CAACGGGAATAGTGCCCGGACAATACATGCATACCTGGGCACGGCAACGA
TGGCCTTGCTCTTCATCCACGCCGGCTTTGGCTTACAGTTGGGCTTTTCC
TTATAAGTGGGGATGAAGGAGGGAGCAGAATCGGAGCATCCATCCGAGCC
TTGATCACTGCACGTGAGAGGGTCTGACAATACTTGTCCCTAATCACATA
TGAATGAAGTTGGGAGGCACGAAGTGAATGATTGAGTGAACATCGGGCCG
ATTGAATGACTAAGTTGGGGACAGAGGAAACCTCACAAAAGTTGCTGAGA
AAAACATATGACGCAACCAAAAGAGTCAGAGATTTCGAAGAAAGA back to topprotein sequence of rna1005 >rna1005-protein ID=rna1005-protein|Name=rna1005|organism=Nannochloropsis gaditana|type=polypeptide|length=546bp
MSGSRCRPSSFTTSSVVLSLNFLIHFLWTSFTTARAVSQLYCSSSEGFVA
LHRNRVVSPFAFQVSQPRAALLSRQIRARLGLNAPVNVRYTCKSTEKTRM
KNSNSPYESSTSILTSLFKSKPSQGGNDRSLGKGRREGRGVRQVRSYFKF
WNQRRMSEAVDLFTEDCSYEDTLYPGAFRGKEALKAHLFRVADALPDSFA
FVLDEVSDGDDVVGVQWHVESEGKQLPFTRGSSIYKLDRVSGKLCSGFDV
PEPTVKSGSASLAVLSLIGRLLDEPRKAVPLAAFIFYCWFVFLSTVAPGP
NALSLDPATWAEVRDLSLNFWLVMPSLAPQSSPVLHPCLEGLFNLLLAWA
ALFSGFMVDGKVAGESTQARKTGEGRGGAKNAFLPYVLGMQLLTNAVYLP
YLVLRKNVWKPADEPAGEGYTLTKAEALGESKIPPLVFIGVGLLSLAWAG
LARGEVYGVELSERWRSFVQILTTDRLTFSFAVDLLYFWVFQGWLLDDDI
ERRGGEVGKISLSLFKAIPFLGLGAYLMTRPPLLLGGERGSVKEEV back to topmRNA from alignment at CM002456.1:941870..944038- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna1005 ID=rna1005|Name=rna1005|organism=Nannochloropsis gaditana|type=mRNA|length=2169bp|location=Sequence derived from alignment at CM002456.1:941870..944038- (Nannochloropsis gaditana)
AGCCTAAATCGGCTGGAAAACGTGCATATTTAATCGATGGACACCACCTT
ACCTCTGGGTGGCTTTTCTCACAGGCATCTGATTCAGGAGCACTTATTTT
TGTTCCAGGGCCGTGCGATGTTCTCGCTCACCCAGACGTTAAGATCTGCC
ACGCATGCGCGAATATAAAGCTTACGACACTAAGCAAAAGCACCCCACAA
ATTGCACAGATTTCAATGCCTGAAGGCCGTGGACGTACCACAGATTAGTC
GCCTCCAATATTTTGCGGAGCAAGACGGATTTATCGCATCGTCACGACAA
AATGTCAGGTTCTAGGTGTCGACCGAGTTCCTTCACAACCTCCTCCGTTG
TCCTGTCCCTGAATTTTCTGATTCATTTTCTGTGGACGAGCTTCACGACA
GCTCGTGCTGTTTCACAATTATATTGCTCTAGTAGCGAAGGGTTTGTTGC
CTTACATCGGAACAGAGTCGTCTCTCCCTTCGCGTTTCAAGTATCTCAAC
CCCGAGCAGCATTGCTCTCTCGACAGATCCGCGCTCGGCTCGGTCTCAAT
GCCCCAGTAAACGTGCGATACACTTGTAAATCCACTGAGAAGACAAGAAT
GAAAAATAGTAATTCCCCTTATGAATCGTCGACTTCGATCTTAACCTCCC
TGTTTAAATCTAAGCCTTCCCAGGGCGGGAACGACAGATCCCTTGGCAAG
GGGAGAAGGGAAGGAAGAGGTGTGAGGCAAGTTCGGTCCTATTTCAAGTT
TTGGAATCAGCGTCGCATGAGTGAAGCTGTCGACCTTTTTACGGAAGACT
GCTCGTACGAAGATACGTTGTATCCCGGCGCCTTCCGGGGGAAGGAGGCC
TTGAAGGCCCACTTGTTTCGCGTGGCTGACGCTTTGCCCGACTCGTTTGC
CTTCGTCTTAGACGAGGTGAGTGACGGCGACGACGTGGTTGGCGTGCAGT
GGCACGTCGAGTCCGAGGGTAAGCAGCTCCCTTTTACGCGAGGGTCCTCC
ATCTACAAGCTGGATCGGGTGTCGGGGAAGCTATGCTCCGGTTTCGACGT
CCCCGAGCCCACGGTTAAGAGCGGAAGCGCCAGTCTGGCGGTCCTCTCCC
TTATCGGGCGCCTCCTCGACGAGCCTCGCAAGGCGGTACCTTTAGCTGCA
TTCATCTTCTATTGCTGGTTCGTTTTCCTCAGCACCGTGGCCCCGGGACC
CAACGCCTTGAGCTTGGATCCTGCCACATGGGCGGAGGTGCGAGACTTGT
CCTTGAATTTCTGGCTTGTCATGCCCTCCTTGGCACCCCAGTCCTCACCT
GTTCTACATCCCTGCTTGGAAGGGCTTTTCAATTTGTTGCTGGCATGGGC
CGCGCTTTTCAGTGGTTTTATGGTCGATGGGAAGGTGGCCGGCGAGAGCA
CCCAGGCAAGGAAAACGGGAGAGGGGAGAGGGGGGGCGAAGAATGCCTTC
CTGCCCTACGTTTTGGGAATGCAGCTTTTGACGAACGCGGTCTATTTACC
GTATTTGGTTCTGCGTAAAAATGTCTGGAAGCCAGCAGACGAACCGGCAG
GGGAGGGGTATACGCTGACGAAAGCCGAGGCCTTGGGCGAGTCCAAGATC
CCACCATTAGTCTTTATCGGAGTGGGACTTCTTTCTTTGGCGTGGGCAGG
TTTGGCACGCGGAGAGGTGTACGGAGTGGAATTGAGCGAACGATGGAGAA
GTTTTGTCCAAATACTCACTACGGACAGGTTGACCTTCAGCTTTGCGGTA
GATTTGCTCTATTTCTGGGTTTTTCAAGGCTGGCTTTTGGACGACGACAT
TGAAAGACGAGGGGGCGAGGTCGGAAAAATCAGCTTGAGCTTGTTTAAGG
CGATACCTTTCCTGGGACTGGGGGCATACCTGATGACGCGGCCGCCGCTA
TTACTGGGGGGTGAGCGTGGTAGTGTGAAGGAAGAGGTCTGAGACATGGG
AGATCCATGAAAGTCAAGACCTTTATTTATAGACAAATTTTGTGTCGTTA
TGTGATTCCTGCAGGCTGCCTGATAGCATGTCCTTGCCTGAAGATGTGCG
CCTGGAGGCATGCGGGCCGTTAGCGCCCTCCCAGATATGACCAGAGCACC
TGTCTCCGGGAAAGACCTCAAAGCCCACCGCGCTATATCATTCTGCCCTT
CAAACAACTTTGTTCTAGA back to topCoding sequence (CDS) from alignment at CM002456.1:941870..944038- >rna1005 ID=rna1005|Name=rna1005|organism=Nannochloropsis gaditana|type=CDS|length=1641bp|location=Sequence derived from alignment at CM002456.1:941870..944038- (Nannochloropsis gaditana)
ATGTCAGGTTCTAGGTGTCGACCGAGTTCCTTCACAACCTCCTCCGTTGT
CCTGTCCCTGAATTTTCTGATTCATTTTCTGTGGACGAGCTTCACGACAG
CTCGTGCTGTTTCACAATTATATTGCTCTAGTAGCGAAGGGTTTGTTGCC
TTACATCGGAACAGAGTCGTCTCTCCCTTCGCGTTTCAAGTATCTCAACC
CCGAGCAGCATTGCTCTCTCGACAGATCCGCGCTCGGCTCGGTCTCAATG
CCCCAGTAAACGTGCGATACACTTGTAAATCCACTGAGAAGACAAGAATG
AAAAATAGTAATTCCCCTTATGAATCGTCGACTTCGATCTTAACCTCCCT
GTTTAAATCTAAGCCTTCCCAGGGCGGGAACGACAGATCCCTTGGCAAGG
GGAGAAGGGAAGGAAGAGGTGTGAGGCAAGTTCGGTCCTATTTCAAGTTT
TGGAATCAGCGTCGCATGAGTGAAGCTGTCGACCTTTTTACGGAAGACTG
CTCGTACGAAGATACGTTGTATCCCGGCGCCTTCCGGGGGAAGGAGGCCT
TGAAGGCCCACTTGTTTCGCGTGGCTGACGCTTTGCCCGACTCGTTTGCC
TTCGTCTTAGACGAGGTGAGTGACGGCGACGACGTGGTTGGCGTGCAGTG
GCACGTCGAGTCCGAGGGTAAGCAGCTCCCTTTTACGCGAGGGTCCTCCA
TCTACAAGCTGGATCGGGTGTCGGGGAAGCTATGCTCCGGTTTCGACGTC
CCCGAGCCCACGGTTAAGAGCGGAAGCGCCAGTCTGGCGGTCCTCTCCCT
TATCGGGCGCCTCCTCGACGAGCCTCGCAAGGCGGTACCTTTAGCTGCAT
TCATCTTCTATTGCTGGTTCGTTTTCCTCAGCACCGTGGCCCCGGGACCC
AACGCCTTGAGCTTGGATCCTGCCACATGGGCGGAGGTGCGAGACTTGTC
CTTGAATTTCTGGCTTGTCATGCCCTCCTTGGCACCCCAGTCCTCACCTG
TTCTACATCCCTGCTTGGAAGGGCTTTTCAATTTGTTGCTGGCATGGGCC
GCGCTTTTCAGTGGTTTTATGGTCGATGGGAAGGTGGCCGGCGAGAGCAC
CCAGGCAAGGAAAACGGGAGAGGGGAGAGGGGGGGCGAAGAATGCCTTCC
TGCCCTACGTTTTGGGAATGCAGCTTTTGACGAACGCGGTCTATTTACCG
TATTTGGTTCTGCGTAAAAATGTCTGGAAGCCAGCAGACGAACCGGCAGG
GGAGGGGTATACGCTGACGAAAGCCGAGGCCTTGGGCGAGTCCAAGATCC
CACCATTAGTCTTTATCGGAGTGGGACTTCTTTCTTTGGCGTGGGCAGGT
TTGGCACGCGGAGAGGTGTACGGAGTGGAATTGAGCGAACGATGGAGAAG
TTTTGTCCAAATACTCACTACGGACAGGTTGACCTTCAGCTTTGCGGTAG
ATTTGCTCTATTTCTGGGTTTTTCAAGGCTGGCTTTTGGACGACGACATT
GAAAGACGAGGGGGCGAGGTCGGAAAAATCAGCTTGAGCTTGTTTAAGGC
GATACCTTTCCTGGGACTGGGGGCATACCTGATGACGCGGCCGCCGCTAT
TACTGGGGGGTGAGCGTGGTAGTGTGAAGGAAGAGGTCTGA back to top
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