rna10038, rna10038 (mRNA) Nannochloropsis gaditana

Overview
Namerna10038
Unique Namerna10038
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length282
Alignment locationKK037260.1:67432..67881 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100172g2.4640.mrna
Orig protein idgnl|cribi|Naga_100172g2.4640
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:67432..67881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100172g2gene9740Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10038rna10038-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20667.1cds10007Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10038 ID=rna10038|Name=rna10038|organism=Nannochloropsis gaditana|type=mRNA|length=282bp
ATGGCTGGGAGGCTCGTTTGTGACCCCGCCAGGGTGGTGGCACTCCCACC
ACAACGACTCGGAGGAGGATGCCTGGGTGCTCCCCATGCAGGACGCTGGC
CTTTACACCCACATGCGCTCCCTCGACATCCGCTTTTCCAAAGCCAACAA
ATGGCCTCGAATCGAGTGAGCTTGCGTCGAGGGGGAAAAAATAAAAAGAA
GGAAGGCCTCTCTAACACTGATTTCGCGCTCAGGCATAATGACGGAAGTA
CAAATGAGAGGGAAGGGAGGGACTTACACTGA
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protein sequence of rna10038

>rna10038-protein ID=rna10038-protein|Name=rna10038|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MYTRKFHRSLFSRALVDFLILPACRPVASGEQSIQNGGRCLPTGRSQCGL
RQASEQATKGGDGEGSGGNCKGSRADHRCPPTGQVRSIRRNRMIGPSTFL
IPTLSQASERRNA
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mRNA from alignment at KK037260.1:67432..67881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10038 ID=rna10038|Name=rna10038|organism=Nannochloropsis gaditana|type=mRNA|length=450bp|location=Sequence derived from alignment at KK037260.1:67432..67881+ (Nannochloropsis gaditana)
atgTACACACGTAGCAAttgcggggaagggagggaggaggaaagggggtg
agagggaaattTCACAGAAGTCTATTTAGTCGTGCCCTTGTGGATTTTTT
GATTCTGCCGGCATGTCGACCCGTGGCTAGTGGTGAGCAATCCATCCAGA
ATGGTGGCCGCTGCCTTCCAACCGGACGAAGTCAGTGTGGCCTGAGGCAG
GCATCAGAGCAGGCCACTaaaggcggagacggggaggggagtgggggaaa
TTGTGTAAAATGgcccggggcgggggggggggcgtatCAGCAGAAATGAA
AACGGGAGATtgcggaagaaaggaagtcGCGCCGACCACAGATGCCCTCC
AACCGGACAGGTGCGATCGATTCGGAGAAATAGGATGATTGGACCGAGTA
CTTTCTTAATACCGACATTATCGCAAGCCTCCGAAAGAAGAAATGCATGA
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Coding sequence (CDS) from alignment at KK037260.1:67432..67881+

>rna10038 ID=rna10038|Name=rna10038|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at KK037260.1:67432..67881+ (Nannochloropsis gaditana)
atgTACACACggaaattTCACAGAAGTCTATTTAGTCGTGCCCTTGTGGA
TTTTTTGATTCTGCCGGCATGTCGACCCGTGGCTAGTGGTGAGCAATCCA
TCCAGAATGGTGGCCGCTGCCTTCCAACCGGACGAAGTCAGTGTGGCCTG
AGGCAGGCATCAGAGCAGGCCACTaaaggcggagacggggaggggagtgg
gggaaaTTGTaaaggaagtcGCGCCGACCACAGATGCCCTCCAACCGGAC
AGGTGCGATCGATTCGGAGAAATAGGATGATTGGACCGAGTACTTTCTTA
ATACCGACATTATCGCAAGCCTCCGAAAGAAGAAATGCATGAatgTACAC
ACggaaattTCACAGAAGTCTATTTAGTCGTGCCCTTGTGGATTTTTTGA
TTCTGCCGGCATGTCGACCCGTGGCTAGTGGTGAGCAATCCATCCAGAAT
GGTGGCCGCTGCCTTCCAACCGGACGAAGTCAGTGTGGCCTGAGGCAGGC
ATCAGAGCAGGCCACTaaaggcggagacggggaggggagtgggggaaaTT
GTaaaggaagtcGCGCCGACCACAGATGCCCTCCAACCGGACAGGTGCGA
TCGATTCGGAGAAATAGGATGATTGGACCGAGTACTTTCTTAATACCGAC
ATTATCGCAAGCCTCCGAAAGAAGAAATGCATGAatgTACACACggaaat
tTCACAGAAGTCTATTTAGTCGTGCCCTTGTGGATTTTTTGATTCTGCCG
GCATGTCGACCCGTGGCTAGTGGTGAGCAATCCATCCAGAATGGTGGCCG
CTGCCTTCCAACCGGACGAAGTCAGTGTGGCCTGAGGCAGGCATCAGAGC
AGGCCACTaaaggcggagacggggaggggagtgggggaaaTTGTaaagga
agtcGCGCCGACCACAGATGCCCTCCAACCGGACAGGTGCGATCGATTCG
GAGAAATAGGATGATTGGACCGAGTACTTTCTTAATACCGACATTATCGC
AAGCCTCCGAAAGAAGAAATGCATGA
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Synonyms
Publications