rna10033, rna10033 (mRNA) Nannochloropsis gaditana

Overview
Namerna10033
Unique Namerna10033
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1133
Alignment locationKK037260.1:56428..57284 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101406g2.1337.mrna
Orig protein idgnl|cribi|Naga_101406g2.1337
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:56428..57284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101406g2gene9735Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10033rna10033-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20671.1cds10002Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10033 ID=rna10033|Name=rna10033|organism=Nannochloropsis gaditana|type=mRNA|length=1133bp
TTGTCTCCCCTGGGCCTCAGGCGACCCTAGCGGCACGCCAAAAAGGACAG
CGATAGAAACATGACTAAGTGCCTTTTGCCTCTCTTTCAACTAAGAACGT
GTCTTTCACACCCACCACACAAGTAGACCAGGAGCAGGGATTGATGAGTG
TCCGCTACGGGGTGAGATTCCACATGGATCATCGACAAAAAGGGTTCAAG
ATCGATTTAGCAGCGTGCCAGTAAACAGGAGTAGTTACATTCGTCACTTC
GAACGCAACGACATTGAGCTCCACGTGCACCATCACCGAGGTTGACGTGC
CTGAAGATAGACATGGGGCTGGAAGGGCGCGAGGCAGACAGGTTGGCCGC
AAATGGCAGCGACCCCATGGAGGACGTTGTCGTTGCACATTGCACGTTGG
TAACTGGGGAATTCGACATGTTCATACAATTCCTCCTTGCCTGCCTCTCG
CTCGGCGTTTTGGTGGTAAAACGCTACCGAGAGCACCCTCCTCGGCCCTT
CATGGTGTGGGTGCTTGACAGCAGCAAGCAGTGTGTCGGGGCCGGCGTGG
CCCATATCGCGAACCTGATCATCGCCATTTTCCTCGCGCGCTTGGGCGGG
TCGGACGAATGTGCCATGTACTTCCTCAACTTCTTCCTCGACACGACCGT
GGGCGTCTTCATTTCCTACCTCCTTCTTCAACTCCTCCAACGCACCGCCC
TCGCCTGCTCCAAGCCACCGTCCCCCCGCACCACCTCCTCCCGCCCTTCA
TCCACCTCTTCCTCCCTCCCTCCCTCCTCCTCCTCCCCCTCCTCCCCCCC
TCCCTCCTGCTGCGCCGTCCTCGCGCGCACGGGCTACTACGGCGACGCCC
TCCGCCCCTCCCTCTCCATTTGGCTGGTGCAGCTTCTTTCGTGGCTCGTC
ATCATTTTCGCCACCAAGTTTCTGGTCTTTGCCTTGATCTACCTGGCCTG
GGCCCCCCTCAATACCCTGGCACTCGGCCTATTCATGCCCTTCAAAAAGC
ATAGGAGGGTGGAGCTCGTCCTGGTCATGATCGTGGGGCCCTTGATTCTG
AACGCGGTCCAGTTCTACATCCAGGTGGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
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protein sequence of rna10033

>rna10033-protein ID=rna10033-protein|Name=rna10033|organism=Nannochloropsis gaditana|type=polypeptide|length=160bp
MAVWRLPTVTECPPTSSPQDNFLMDEQRGLGERLPLIKTQRLSPASSSSS
TSSSSSLPAPTTAFGSRAAHGRHHHASHPATLSSSSSSSLAVQQRHRRPS
TPGTTNFDDNIVPEGGCLEGGEGTTGGLTGGAGGLGGGGGGEATAPSLIP
PLQQKRARVD
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mRNA from alignment at KK037260.1:56428..57284+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10033 ID=rna10033|Name=rna10033|organism=Nannochloropsis gaditana|type=mRNA|length=857bp|location=Sequence derived from alignment at KK037260.1:56428..57284+ (Nannochloropsis gaditana)
GCATGGATACATACGTGTAGGAGCACAGCGATTCCGTCATGGCAGTGTGG
AGGTTGCCAACGGTAACTGAgtgccctcccacctcctccccccaggACAA
TTTCCTCATGGACGAGCAgcgggggctgggggagCGTCTCCCCTTGATCA
AAACCCAGCGTTtgtcccccgcttcctcttcctcctccacctcctcctcc
tcctcccttcccgcccccacgACCGCCTTCGGCTCCCGTGCCGCCCACGG
GAGACACCACCACGCCTCCCATCCAGCCacgctctcctcttcctcctcct
cctccctcgccgtgcAGCAACGTCACCGACGCCCGTCGACCCCCGGGACC
ACGAATTTCGACGACAACATAGTCCCGGAAGGGGGTtgcctggagggggg
agaagggacgACGGGGGGGCTAacagggggggcaggaggtttggggggag
gaggaggaggagaagcgacAGCTCCCTCACTCATACCGCCCTTGCAACAA
AAGAGGGCGAGAGTGGATTAAGTAGGTGGAAAGCGGGGCCAAATACGTGT
AGATTACGTAAAGATAGTCAAAGAGAGGTTACGAGCACGCATTGCATGTA
TAGTCACGCGCCtcgggaggagcgaggaaaggaCTGCCAGGAATGGCACT
CAAATTAGACATTGTGCCAAGAGGAGACACACAAAAGAAATGTTACATCC
CATTCATCAAATTTAGTCAGCGGTCTTGTAAGAAGCGTGACAGGAGGCTT
TACTTTCGAAAGTGCAAAGGTATACTTCCGTCAGGAGACATTGTCAGCAT
ATCATCTTTAAAATTTACCCGTTTTATGTCAAGGGCAAAGGTCAATGTAT
GAAAACG
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Coding sequence (CDS) from alignment at KK037260.1:56428..57284+

>rna10033 ID=rna10033|Name=rna10033|organism=Nannochloropsis gaditana|type=CDS|length=483bp|location=Sequence derived from alignment at KK037260.1:56428..57284+ (Nannochloropsis gaditana)
ATGGCAGTGTGGAGGTTGCCAACGGTAACTGAgtgccctcccacctcctc
cccccaggACAATTTCCTCATGGACGAGCAgcgggggctgggggagCGTC
TCCCCTTGATCAAAACCCAGCGTTtgtcccccgcttcctcttcctcctcc
acctcctcctcctcctcccttcccgcccccacgACCGCCTTCGGCTCCCG
TGCCGCCCACGGGAGACACCACCACGCCTCCCATCCAGCCacgctctcct
cttcctcctcctcctccctcgccgtgcAGCAACGTCACCGACGCCCGTCG
ACCCCCGGGACCACGAATTTCGACGACAACATAGTCCCGGAAGGGGGTtg
cctggaggggggagaagggacgACGGGGGGGCTAacagggggggcaggag
gtttggggggaggaggaggaggagaagcgacAGCTCCCTCACTCATACCG
CCCTTGCAACAAAAGAGGGCGAGAGTGGATTAA
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Synonyms
Publications