rna10022, rna10022 (mRNA) Nannochloropsis gaditana

Overview
Namerna10022
Unique Namerna10022
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1031
Alignment locationKK037260.1:22812..23247 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101461g2.5893.mrna
Orig protein idgnl|cribi|Naga_101461g2.5893
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:22812..23247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101461g2gene9724Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20682.1cds9991Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10022rna10022-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10022 ID=rna10022|Name=rna10022|organism=Nannochloropsis gaditana|type=mRNA|length=1031bp
CATTCCATCTTCCTAGGGGACCTCACCCCCCGCCACGACCCGTCCCTCTT
CGTCCGAGCCGTGCGGGACCTGTACGCCCTCTACCTCGCCCTCTATCCCT
CCCTCCCCCTCGTCATCAACCTGGACGGGTGGGTGCGAGGCCTTGGCCTG
GAACTCATGCGGGTGCTCCTCCAAGATGTGCTCGTGCCGGACGTGGTGGT
GAAAATGCAGGGTGTCGTGAAAGCCGCTCAATTCGCTCTCCCGAACCCTC
TTGCGCCTCTAACTCGAGTGATGGAAGTGGAAGGAAGCGACTGCCTTGAT
CTGAGGGAGAAGGACGGGAGGGACGGGGTAAGGGGCAGCAAGAGAAGAGG
AGTAGCGGCACAAGACGCGAGGATCTTAAGGTTGCTGGCATATTTTTTGG
CGGGAAAAGATGAGGAGGAAAATGGAAGGGAAAACTGGACGACGATGGAA
GAAAAGGAATCTGAGGAGAAGAGGGTGGCAGGAGGAGGAGGAGATGAAGG
AGAAAGGGATAGAGGCAGGGGAGAGCTCTTTTATGGTGTCCGCCAGCAGA
GTGGGACCGTACTTGACCCTGAAGGGAGGATCGCCCATTTTTTCGCAGCC
ATGGTAGGTGTCGCAAGCCCTTTCCTACACCCCCTTCATGTCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCGCGCCTTCCCTTCTCTAGCTATGCGTGC
CTGCCGGCCCCGAGGCAAGCGTTTAATCTGTTGCACACGCGTCTTCTGCC
TGTTGGTTTTTTAACAAGATAGAATGTATTTCTCGACTTATCCTGCGTGG
CTGTGCATTTGAACCTTCCGGAACCTTCTTTCCCTTTTGTGTCACCTCCA
ACTCGACTTTAAGTGTACCTCTTCCATCCCCTTCCTCCCTTACTCCCTCC
CTCCCCCAGACCCCCTACCGTATCCCCCTGCATCTGCTTCAATTGAGCGT
TCTTCACGAGGAAGTCCCTTTCCACGAAATAAATCGAGCGTTCAACGCCT
CCCTTGTTGGCCTGCATGCCCGCCCTCCCTC
back to top

protein sequence of rna10022

>rna10022-protein ID=rna10022-protein|Name=rna10022|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
LLLLTPLSPSISHLPLFLTAHDDAEALWTQHRQLATPARGPSSLPPSPLS
SSPAVAPLGPGQGRRGKDKREGGEGTQEASSLILHLPGALIMDEKVLVEC
LGMIPLCVPPTWTNAGDEVRFFKFRKI
back to top

mRNA from alignment at KK037260.1:22812..23247-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10022 ID=rna10022|Name=rna10022|organism=Nannochloropsis gaditana|type=mRNA|length=436bp|location=Sequence derived from alignment at KK037260.1:22812..23247- (Nannochloropsis gaditana)
CTCCTCCTCCTCACCCCTTTGTCCCCCTCCATCTCCCACCTGCCCCTTTT
TCTCACCGCCCACGATGACGCCGAGGCCCTGTGGACCCAACACCGGCAAC
TCGCAACTCCTGCTCGCGGCCCTTCATCCCTGCCTCCCTCCCCCCTTTCC
TCCTCCCCCGCCGTGGCCCCGCTGGGCCCAGGCCAAGGTCGGAGGGGGAA
GGACAAGAGAGAGGGGGGCGAGGGGACGCAGGAGGCTTCTTCCCTCATCC
TTCACTTGCCTGGAGCTTTGATCATGGACGAGAAGGTGTTGGTGGAGTGT
TTGGGCATGATCCCGTTGTGCGTGCCCCCGACGTGGACGAACGCGGGGGA
TGAGGTGCGTTTTTTCAAATTTCGCAAAATTTGAATTCAAACTTGATTTT
CTAAAAAGTTTGGGGAGGGGGCAGTGTTTATTGTGA
back to top

Coding sequence (CDS) from alignment at KK037260.1:22812..23247-

>rna10022 ID=rna10022|Name=rna10022|organism=Nannochloropsis gaditana|type=CDS|length=384bp|location=Sequence derived from alignment at KK037260.1:22812..23247- (Nannochloropsis gaditana)
CTCCTCCTCCTCACCCCTTTGTCCCCCTCCATCTCCCACCTGCCCCTTTT
TCTCACCGCCCACGATGACGCCGAGGCCCTGTGGACCCAACACCGGCAAC
TCGCAACTCCTGCTCGCGGCCCTTCATCCCTGCCTCCCTCCCCCCTTTCC
TCCTCCCCCGCCGTGGCCCCGCTGGGCCCAGGCCAAGGTCGGAGGGGGAA
GGACAAGAGAGAGGGGGGCGAGGGGACGCAGGAGGCTTCTTCCCTCATCC
TTCACTTGCCTGGAGCTTTGATCATGGACGAGAAGGTGTTGGTGGAGTGT
TTGGGCATGATCCCGTTGTGCGTGCCCCCGACGTGGACGAACGCGGGGGA
TGAGGTGCGTTTTTTCAAATTTCGCAAAATTTGA
back to top
Synonyms
Publications