rna1001, rna1001 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna1001
Unique Name	rna1001
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	700
Alignment location	CM002456.1:932679..935583 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100112g20.5456.mrna
Orig protein id	gnl\|cribi\|Naga_100112g20.5456
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:932679..935583 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100112g20	gene964	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29673.1	cds1000	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna1001	rna1001-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:932679..935583-
coding sequence from alignment at CM002456.1:932679..935583-

mRNA sequence

>rna1001 ID=rna1001|Name=rna1001|organism=Nannochloropsis gaditana|type=mRNA|length=700bp
TCAGGATGCGCTTAGCTGTGCGTACATACAATAGAAATATCAGGAGCATG
TCAATTTCATTGCGCATAGTCTCGCAAAGAAGCGCCCAAGGTGGGTTCCA
ACTTCGCATTTCCAGCCTCCTATCGCCCGGTCACGTCAACAAGTCGCTCT
CCGTCTCATTCCCATTTCTTCAAGCCTCATTTTCTTCCTGCCACTATCTC
ACGGCGCTCAGGTGTTGTGAGCATCCTTCAACAAAGCAATGGTGCGCACC
TTTATACCGCAGCCAACACAGGATGATGCTCAAGTCCTACTGGCCAAACG
GTTTTTCGTAGTGGGCTGCCTGGGCTTGCCCTGGCTGTGGGCCGTCTCTG
TGCTTTACTTCTGGCCTAAACTCCACGGAAATGAAACCGCTGAGCAGACT
GGCCAAGCGCATGGAGACAGCAATTTGAACAGAGAAGGACCACGCGTCGC
GAAGTCGGAATTACGGAAGTGGGTAAACCGCTCCTTAGTGGGAGCCATAG
TAGGCTTCGGCCTCCTCTTTGCTTGGCTTATTTTCTTCCAACTGCGATGG
CAGAAATGGGGTTACGGCGTGCTCCCCTACATGGTCAGCGCGCCACAGAG
CTATTCGTCGGGATGGTAAAGCAAAGTAAAGGAGCAAGGACAAAATAGAC
AAAATTTGTAGATTTAATCTGTGGCCCGTGAGTTGTGCATAGCACGAGGA

protein sequence of rna1001

>rna1001-protein ID=rna1001-protein|Name=rna1001|organism=Nannochloropsis gaditana|type=polypeptide|length=869bp
MPPLTRRKQRASVLKMTPLLLLPAFIFLSPASVHEVAAVKLGTVSPRVWE
SLERQGIDSEVMDEAAAEVAAAAAATAAAEATKDAAKEGEELKRLKVERA
RREALDRAKDIDWKSTADAAKKERELDEKYGMWKHVILNPWFQWVMGLLD
DLAAIELVGEARMAPAAILVLLYMLFKARQPLSVLCLAAAFFYNIHPILI
AGSAVGLKAWSKLRRPKGYVPAEERKKRLPGAADEAQGVEGDPRSAQAKR
GKAHGAPGLSEDARDIRTLLTLPQDVDHIVLGSDVGGLYAAALLARVGHR
VLVLEGGETVGNCTSELKGVECDWGLLNAGMVHVYDELLKAGALEGAPEV
KWSRIGTEADGHSFDVVKIEGLGDVVYRAGKQALVDDQVTSAPGPENRER
VGTFVSRLQAVAREQSAFFIGRLFSQQTAGWITTLLGQQYGGVGARTAEQ
VLGVTLPDYRQLDLLRGMFRTENLQPSELSFAAYVSATNHALEGLSYPQG
GFRSLARALVPTIQAAGGRVLTRAHVREILLDSQSKPTRAVGVVLENGEK
VSCAKSVICASGVVPLFTQYLPKAPLPAGGDCLQEARPRLYTLVLLKGSA
EELELPASDYYQLPTEEGGGGGGGAPRGWFHIYFPSAKEPSGVATITGPV
GKDTHGKEEAKGGARGYSTCVIETEADDDILEVCYRRVDGSTSSKPVSGP
ADARSKGKAAPGSSTMAAGPSGLKFYHIKPPSDQKVRRLQQGLVRHLLQL
YPQLEGHVEEQGIQTVGPFRVGLSHRPPRFMAPGLRTRIVPGVANVLLGG
GDLVLGTFVGSLLGGWLAAHSALNYGALDLLVLERNLNNDLKNVPRPRYE
GGGGEEPHAGGGGDEAKQD

mRNA from alignment at CM002456.1:932679..935583-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna1001 ID=rna1001|Name=rna1001|organism=Nannochloropsis gaditana|type=mRNA|length=2905bp|location=Sequence derived from alignment at CM002456.1:932679..935583- (Nannochloropsis gaditana)
AGAACGCCCGCGAGAGGCTTCCCTTCTTTGGTTGCAAAGCTACACTACTC
GTCGTCGACCTCCCTCACTTTAGAAAGCCGCCTTTCCACTCCAGCAATTT
TCATTCCGCACGACATCGCAATGCCTCCCTTGACAAGGAGGAAACAAAGA
GCAAGCGTTTTAAAAATGACGCCTCTTCTTCTTCTACCTGCTTTCATCTT
TTTGTCACCTGCTTCCGTGCATGAAGTCGCCGCCGTCAAGCTGGGCACGG
TGTCTCCGCGCGTCTGGGAGAGCTTGGAGCGGCAAGGGATCGACAGCGAG
GTTATGGACGAGGCCGCCGCGGAGGTTGCGGCCGCTGCTGCAGCTACTGC
TGCTGCAGAAGCCACAAAGGACGCTGCCAAAGAAGGGGAGGAGCTAAAGC
GACTCAAAGTGGAAAGAGCTCGACGGGAGGCATTGGACAGGGCCAAGGAC
ATCGACTGGAAGTCGACAGCTGACGCGGCGAAGAAGGAGCGGGAATTGGA
CGAGAAGTATGGGATGTGGAAGCACGTGATCCTCAATCCCTGGTTCCAGT
GGGTGATGGGGCTCCTGGACGACCTGGCGGCGATCGAGTTGGTCGGGGAG
GCCAGGATGGCGCCGGCCGCGATCCTGGTCCTCCTTTACATGCTCTTCAA
AGCCCGACAGCCCCTCTCGGTCCTCTGTCTGGCCGCTGCATTCTTCTACA
ACATCCACCCCATCCTCATCGCTGGTTCCGCGGTTGGGCTCAAGGCCTGG
TCGAAGCTGCGCCGGCCGAAGGGCTATGTCCCCGCGGAGGAGCGGAAGAA
GCGGCTTCCCGGGGCCGCAGACGAGGCCCAGGGAGTAGAGGGCGATCCAC
GGAGTGCGCAGGCCAAGAGAGGGAAGGCCCACGGGGCGCCGGGCCTGTCG
GAGGACGCGCGAGACATCCGGACCCTGCTGACCCTCCCCCAAGACGTGGA
CCACATCGTGCTCGGATCGGACGTGGGGGGGCTGTACGCGGCGGCCCTGC
TGGCCCGCGTCGGCCACAGAGTGCTGGTGCTGGAGGGCGGGGAGACGGTG
GGGAACTGCACGAGCGAGCTGAAAGGGGTGGAATGCGACTGGGGCCTGCT
GAACGCGGGCATGGTGCACGTCTACGACGAGCTCCTCAAAGCCGGCGCCC
TGGAAGGGGCGCCCGAGGTGAAATGGTCACGGATCGGGACGGAGGCGGAC
GGGCACTCCTTCGACGTGGTCAAGATCGAGGGCCTGGGCGACGTGGTTTA
TCGCGCGGGGAAACAGGCCCTGGTGGACGACCAGGTCACCTCCGCGCCGG
GACCCGAGAACCGGGAGAGGGTGGGCACATTCGTGAGTCGGCTCCAGGCG
GTGGCCCGGGAGCAGTCTGCCTTCTTCATCGGCCGCCTCTTCTCGCAGCA
GACCGCCGGGTGGATCACAACGCTCCTGGGGCAGCAGTACGGGGGCGTGG
GGGCGAGGACCGCGGAGCAGGTCTTGGGGGTGACCCTCCCGGACTATCGA
CAGCTCGACCTTTTGCGGGGCATGTTCCGCACGGAGAACCTGCAACCCTC
GGAGCTGTCCTTCGCGGCCTACGTGTCGGCGACGAACCACGCCTTGGAAG
GCCTGAGCTACCCGCAGGGGGGCTTCCGGAGCCTGGCGCGGGCCCTGGTC
CCCACCATCCAGGCGGCCGGCGGCCGGGTCTTGACGCGCGCGCACGTGAG
AGAGATCCTGCTGGACAGCCAGAGCAAGCCCACGCGGGCGGTGGGAGTGG
TGCTGGAAAATGGAGAGAAGGTGTCCTGTGCCAAATCGGTCATCTGCGCC
TCGGGCGTGGTCCCCCTCTTCACCCAGTACCTTCCCAAGGCCCCTCTCCC
CGCGGGGGGAGACTGCTTGCAGGAGGCAAGGCCCCGCCTGTACACGCTCG
TGCTGCTCAAGGGTTCGGCGGAAGAGTTAGAGCTACCCGCTTCGGACTAC
TATCAGTTGCCGACCGAGGAGGGCGGCGGAGGGGGAGGAGGGGCGCCCCG
GGGCTGGTTTCACATTTATTTTCCGTCGGCGAAAGAGCCATCGGGCGTGG
CGACCATTACAGGACCTGTCGGCAAAGACACGCATGGGAAAGAAGAGGCG
AAGGGCGGGGCACGGGGATACAGCACCTGTGTGATAGAGACGGAGGCCGA
CGACGACATTTTGGAGGTGTGCTACCGGCGAGTGGACGGAAGCACTAGCA
GCAAGCCTGTCTCAGGGCCTGCCGACGCTCGCTCCAAGGGAAAAGCGGCG
CCTGGCTCCAGTACGATGGCTGCGGGCCCGTCTGGCCTCAAATTTTACCA
CATCAAGCCGCCCTCAGACCAGAAGGTGCGCCGGTTGCAACAGGGGCTGG
TGCGCCACCTCCTGCAGCTGTACCCGCAGCTGGAGGGGCACGTGGAGGAG
CAAGGGATCCAGACGGTCGGCCCTTTCCGCGTGGGGCTGTCCCACCGGCC
TCCGCGTTTCATGGCCCCGGGTCTGCGCACCCGGATCGTGCCGGGCGTGG
CGAACGTGCTCTTGGGGGGCGGGGACCTGGTTCTCGGGACATTCGTCGGC
AGCCTGCTTGGCGGTTGGCTTGCCGCGCATTCGGCTCTGAACTACGGAGC
GCTTGACCTGCTCGTGCTGGAGCGGAATCTGAACAACGACCTGAAGAACG
TGCCGCGGCCCCGGTATGAAGGCGGGGGTGGAGAGGAGCCGCATGCAGGA
GGGGGGGGGGATGAGGCCAAGCAGGACTAAGGCTGCTCGAGTGCGATGCG
ACGTTTCGTGGGGTAAAACTGTCCCGCTTTATGACAAATGGTCTCCCGGT
CAAAAGATGGAAGTGGCACACAAAGCAATAAAGACTTGGCGACTTCCTCG
TGCTATGCACAACTCACGGGCCACAGATTAAATCTACAAATTTTGTCTAT
TTTGT

Coding sequence (CDS) from alignment at CM002456.1:932679..935583-

>rna1001 ID=rna1001|Name=rna1001|organism=Nannochloropsis gaditana|type=CDS|length=2610bp|location=Sequence derived from alignment at CM002456.1:932679..935583- (Nannochloropsis gaditana)
ATGCCTCCCTTGACAAGGAGGAAACAAAGAGCAAGCGTTTTAAAAATGAC
GCCTCTTCTTCTTCTACCTGCTTTCATCTTTTTGTCACCTGCTTCCGTGC
ATGAAGTCGCCGCCGTCAAGCTGGGCACGGTGTCTCCGCGCGTCTGGGAG
AGCTTGGAGCGGCAAGGGATCGACAGCGAGGTTATGGACGAGGCCGCCGC
GGAGGTTGCGGCCGCTGCTGCAGCTACTGCTGCTGCAGAAGCCACAAAGG
ACGCTGCCAAAGAAGGGGAGGAGCTAAAGCGACTCAAAGTGGAAAGAGCT
CGACGGGAGGCATTGGACAGGGCCAAGGACATCGACTGGAAGTCGACAGC
TGACGCGGCGAAGAAGGAGCGGGAATTGGACGAGAAGTATGGGATGTGGA
AGCACGTGATCCTCAATCCCTGGTTCCAGTGGGTGATGGGGCTCCTGGAC
GACCTGGCGGCGATCGAGTTGGTCGGGGAGGCCAGGATGGCGCCGGCCGC
GATCCTGGTCCTCCTTTACATGCTCTTCAAAGCCCGACAGCCCCTCTCGG
TCCTCTGTCTGGCCGCTGCATTCTTCTACAACATCCACCCCATCCTCATC
GCTGGTTCCGCGGTTGGGCTCAAGGCCTGGTCGAAGCTGCGCCGGCCGAA
GGGCTATGTCCCCGCGGAGGAGCGGAAGAAGCGGCTTCCCGGGGCCGCAG
ACGAGGCCCAGGGAGTAGAGGGCGATCCACGGAGTGCGCAGGCCAAGAGA
GGGAAGGCCCACGGGGCGCCGGGCCTGTCGGAGGACGCGCGAGACATCCG
GACCCTGCTGACCCTCCCCCAAGACGTGGACCACATCGTGCTCGGATCGG
ACGTGGGGGGGCTGTACGCGGCGGCCCTGCTGGCCCGCGTCGGCCACAGA
GTGCTGGTGCTGGAGGGCGGGGAGACGGTGGGGAACTGCACGAGCGAGCT
GAAAGGGGTGGAATGCGACTGGGGCCTGCTGAACGCGGGCATGGTGCACG
TCTACGACGAGCTCCTCAAAGCCGGCGCCCTGGAAGGGGCGCCCGAGGTG
AAATGGTCACGGATCGGGACGGAGGCGGACGGGCACTCCTTCGACGTGGT
CAAGATCGAGGGCCTGGGCGACGTGGTTTATCGCGCGGGGAAACAGGCCC
TGGTGGACGACCAGGTCACCTCCGCGCCGGGACCCGAGAACCGGGAGAGG
GTGGGCACATTCGTGAGTCGGCTCCAGGCGGTGGCCCGGGAGCAGTCTGC
CTTCTTCATCGGCCGCCTCTTCTCGCAGCAGACCGCCGGGTGGATCACAA
CGCTCCTGGGGCAGCAGTACGGGGGCGTGGGGGCGAGGACCGCGGAGCAG
GTCTTGGGGGTGACCCTCCCGGACTATCGACAGCTCGACCTTTTGCGGGG
CATGTTCCGCACGGAGAACCTGCAACCCTCGGAGCTGTCCTTCGCGGCCT
ACGTGTCGGCGACGAACCACGCCTTGGAAGGCCTGAGCTACCCGCAGGGG
GGCTTCCGGAGCCTGGCGCGGGCCCTGGTCCCCACCATCCAGGCGGCCGG
CGGCCGGGTCTTGACGCGCGCGCACGTGAGAGAGATCCTGCTGGACAGCC
AGAGCAAGCCCACGCGGGCGGTGGGAGTGGTGCTGGAAAATGGAGAGAAG
GTGTCCTGTGCCAAATCGGTCATCTGCGCCTCGGGCGTGGTCCCCCTCTT
CACCCAGTACCTTCCCAAGGCCCCTCTCCCCGCGGGGGGAGACTGCTTGC
AGGAGGCAAGGCCCCGCCTGTACACGCTCGTGCTGCTCAAGGGTTCGGCG
GAAGAGTTAGAGCTACCCGCTTCGGACTACTATCAGTTGCCGACCGAGGA
GGGCGGCGGAGGGGGAGGAGGGGCGCCCCGGGGCTGGTTTCACATTTATT
TTCCGTCGGCGAAAGAGCCATCGGGCGTGGCGACCATTACAGGACCTGTC
GGCAAAGACACGCATGGGAAAGAAGAGGCGAAGGGCGGGGCACGGGGATA
CAGCACCTGTGTGATAGAGACGGAGGCCGACGACGACATTTTGGAGGTGT
GCTACCGGCGAGTGGACGGAAGCACTAGCAGCAAGCCTGTCTCAGGGCCT
GCCGACGCTCGCTCCAAGGGAAAAGCGGCGCCTGGCTCCAGTACGATGGC
TGCGGGCCCGTCTGGCCTCAAATTTTACCACATCAAGCCGCCCTCAGACC
AGAAGGTGCGCCGGTTGCAACAGGGGCTGGTGCGCCACCTCCTGCAGCTG
TACCCGCAGCTGGAGGGGCACGTGGAGGAGCAAGGGATCCAGACGGTCGG
CCCTTTCCGCGTGGGGCTGTCCCACCGGCCTCCGCGTTTCATGGCCCCGG
GTCTGCGCACCCGGATCGTGCCGGGCGTGGCGAACGTGCTCTTGGGGGGC
GGGGACCTGGTTCTCGGGACATTCGTCGGCAGCCTGCTTGGCGGTTGGCT
TGCCGCGCATTCGGCTCTGAACTACGGAGCGCTTGACCTGCTCGTGCTGG
AGCGGAATCTGAACAACGACCTGAAGAACGTGCCGCGGCCCCGGTATGAA
GGCGGGGGTGGAGAGGAGCCGCATGCAGGAGGGGGGGGGGATGAGGCCAA
GCAGGACTAA

Synonyms

Publications