rna10006, rna10006 (mRNA) Nannochloropsis gaditana

Overview
Namerna10006
Unique Namerna10006
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1323
Alignment locationKK037259.1:110672..110980 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101353g2.4774.mrna
Orig protein idgnl|cribi|Naga_101353g2.4774
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:110672..110980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101353g2gene9708Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20697.1cds9975Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10006rna10006-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10006 ID=rna10006|Name=rna10006|organism=Nannochloropsis gaditana|type=mRNA|length=1323bp
ATGTCGGACAACAATGGTGATTGCAAAAGTCGTGGTCTCTTTTTGTGGAA
GGTAACTCTGCGTTGTGAATGCCTTAATGTAATTATTCAAGTCGTCAACC
TCCTCGTACTACTGCTCAAGACATTGGTCAGAACTCCTGGAAACGCCCAC
GTGAGGGCTACCGATTCTCGTTTGCTCTACATATTTTCTATTTTTGTGTT
AATATCTACAACCCTTTCAAATGCAGACGCATTAATTTCTTCCAGCATGT
GGTGTGCTTCTTCTACCGCAATCAGCCGGCGCATCTTCAGAACTTCTGGA
AACGCCCGTGTGAGAGCTACTGATTTGGGAAAATCTCGTTTGCTCTACAT
ATGGTCTATTTTTGTGTTAATACTCACAACCTCTTCAAATGCAGACGCAT
TAATTTCTTCCAGCATGTGGCGTGGTTCATCCACCGCGATCAGCCGGCGC
ATCTTCAAGCTCCTCAACGACCAGGGCAACCGGGAATTCGAGAATTCTTT
GACCTACACCGCTTTTTCGCACTGGTTTGATTACAACGAGCTTCCAGGCA
GCGCGAGCTGGTGCAAGACGCAAGCGCAGGAAGAACGTGGGCACGCTTTG
AAAATTCTTGAACACTTGTCGTCACGTCGGATTGAGGACGACGTGACGGG
CTCGGAATGGGAAACACAGGAAGCCGAGCGGCTGCAAAACGTGCGAGGCA
CGAACAGCAATGGTGACGTACCAACGGAATCCAGTGAAGCATCCGAACGC
GAGCCCGACCTCGGCAAGCTGCGAAGCGAGGCAGCCCCCCAGAAGAGCAA
GACCTTTCACTGGGAACAGGTTCCCAACATTGTGTTGGACGTGAAGGGCC
CCTTTACCACCACATTTTCCGACCCGATTGCAATTTGGCGCAAAGCCCTC
GAGCAGGAACGTTACAACTCCCGAAAAATCTTTCAAATCATGGCCGCTGC
GCGTGAAACGCAGGACTATGTGACGGAGAGCCTCCTGATGTCATACTACA
TCCCCGAACAGTTGGGAGAAGAAAAAGCCGTGGAGGAGGTGCTGTCCAAT
ACGCTTTTGGTTATGAAGCGCGGGCCAGAATTTTACTACGAGCTCGACCG
GTCATTGCCATCCAAGCCGCACTAGGAGAGAACGTGGACGGAGAAAGGGG
GTCCAGCAAAATGCGAAGAGTAGAGACAAAAAGAGGTGGGGAGGGGTGCG
TGGGGAGATAAGAAGGTAGTTATGCGAAGGCCATGAGGTAAAGAGGCAAG
GGAATAAGGTGTAGTCTATGTTATGGAGAGGGACGCTGCGCTAGGCTTTG
GGACGGGCTCAAGGGCTAACGGG
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protein sequence of rna10006

>rna10006-protein ID=rna10006-protein|Name=rna10006|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MPGTLAASRLLPCLRFFFPLLSMALWKPLTAFVFPPTSSFPCGSAPFTSQ
PALWAQPILSSAERLTINEPVLREIALKLEAVGLGKTHLVQDKSLGPGLH
VR
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mRNA from alignment at KK037259.1:110672..110980-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10006 ID=rna10006|Name=rna10006|organism=Nannochloropsis gaditana|type=mRNA|length=309bp|location=Sequence derived from alignment at KK037259.1:110672..110980- (Nannochloropsis gaditana)
ATGCCAGGAACTCTAGCCGCGTCACGGCTACTGCCATGTCTTCGATTCTT
TTTCCCACTTCTTTCAATGGCGCTATGGAAACCCCTGACGGCCTTTGTTT
TCCCTCCAACTTCCTCCTTCCCATGCGGTTCTGCTCCCTTCACATCTCAA
CCTGCTCTCTGGGCCCAACCCATCCTTTCTTCCGCCGAGCGACTCACGAT
TAACGAACCTGTGCTCCGAGAAATTGCCCTTAAACTCGAAGCGGTGGGTC
TGGGCAAGACTCACCTAGTTCAAGACAAGAGCCTGGGGCCGGGTTTACAC
GTACGTTAA
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Coding sequence (CDS) from alignment at KK037259.1:110672..110980-

>rna10006 ID=rna10006|Name=rna10006|organism=Nannochloropsis gaditana|type=CDS|length=309bp|location=Sequence derived from alignment at KK037259.1:110672..110980- (Nannochloropsis gaditana)
ATGCCAGGAACTCTAGCCGCGTCACGGCTACTGCCATGTCTTCGATTCTT
TTTCCCACTTCTTTCAATGGCGCTATGGAAACCCCTGACGGCCTTTGTTT
TCCCTCCAACTTCCTCCTTCCCATGCGGTTCTGCTCCCTTCACATCTCAA
CCTGCTCTCTGGGCCCAACCCATCCTTTCTTCCGCCGAGCGACTCACGAT
TAACGAACCTGTGCTCCGAGAAATTGCCCTTAAACTCGAAGCGGTGGGTC
TGGGCAAGACTCACCTAGTTCAAGACAAGAGCCTGGGGCCGGGTTTACAC
GTACGTTAA
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Synonyms
Publications